Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007024

Physical Location & Seq

Genomic Coordinates Reverse (-)

17359758 .. 17362240

Gene Structure 2483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G47160.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCAAAAGTTTCGTTTAAGGATTCTCTGAAAGCTCTTGAAGCTGATATTCAACACGCTAACACTGTAGCTTTAGATTATCCTCGGGAGAAGGATGGAGCGCGTGTTCAAATGAGGCTATCGTACACTCCAGCTGCTCAGTTTTTACTTTTTCTTGTACAATGGACTGATTGCCATCTTGCTGGTACACTCGGTCTGCTCAGAGTTCTGATTTACATGACCTATGCGGATGGGAAAACCACAATGTCGGTTTATGAGAGAAAAACAAGTATTAAAGATTTCTATGCTGTGATATTTCCGTCGTTGTTACAACTAGAAAGAGGTATCACAGACCTGGATGATCGTAAACAGAAAGAAGTCTGCAAAATACGGTACAGAAATAAAGATGAGACTGAAAAGGTCAAGCTCTCGGAGATTGACATCGAGAGAGAAGAAGAATGCGGGATTTGTATGGAGATGAACAACATGGTGGTTCTCCCTAATTGTACGCATTCTTTATGCATCAAGTGTTACCGCGATTGGCACGGGAGGTCAGAATCATGCCCTTTTTGCCGAGACAGTCTTAAGAGAGTAAACTCAGGGGACTTATGGATGTTAATGGAGAAATCCGATACGGTTAATATGTATACAATTGAGCGGGAGAATAAGAAGAGGTTGTTTGTGTATATAGAGAAGCTACCTCTAGTGGTTCCAGATCAAGTGTTTGCTTCTTCTCCTTATGATTGCCATGTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

245

Amino Acids

28.52

Weight (kDa)

6.94

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	107 - 153	4.3e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	109 - 148	3.3e-07	Ring finger domain
zf-C3HC4_2	PF13923	109 - 147	7.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47160 AT3G47160 AT3G47160 AT5G58787 AT5G58787
fragaria_vesca	FvH4_3g38470
malus_domestica	MD03G1071600.v1.1 MD11G1075300.v1.1
prunus_persica	Prupe.6G058200_v2.0.a1 Prupe.6G058200_v2.0.a1 Prupe.6G058200_v2.0.a1 Prupe.6G058200_v2.0.a1
pyrus_communis	pycom03g05790 pycom11g06260
rosa_chinensis	RchiOBHm_Chr5g0069171
rosa_laevigata	RLG00000036042
rosa_multiflora	Rmu_sc0000936.1_g000016
rosa_roxburghii	Rroxscaffold_1G00011630
rosa_rugosa	Rorug05G0396600 Rorug05G0396700
rosa_samantha	Rh5BG472400 Rh5CG494700 Rh5DG484900
rosa_wichuraiana	Rw0G006020 Rw5G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	637
AccI	GTMKAC	1 cut(s)	626
AccII	CGCG	2 cut(s)	103, 516
AciI	CCGC	4 cut(s)	227, 441, 514, 637
AfaI	GTAC	5 cut(s)	125, 159, 187, 374, 487
AflII	CTTAAG	1 cut(s)	563
AgsI	TTSAA	3 cut(s)	41, 53, 110
AjnI	CCWGG	1 cut(s)	333
AloI	GAACNNNNNNTCC	2 cut(s)	90, 122
AluBI	AGCT	6 cut(s)	35, 44, 71, 134, 406, 676
AluI	AGCT	6 cut(s)	35, 44, 71, 134, 406, 676
Alw26I	GTCTC	2 cut(s)	383, 549
Ama87I	CYCGRG	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	3 cut(s)	89, 183, 224
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	335
BcoDI	GTCTC	2 cut(s)	383, 549
BfaI	CTAG	2 cut(s)	314, 683
BfmI	CTRYAG	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	563
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	335
BmeT110I	CYCGRG	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	690
BmrFI	CCNGG	1 cut(s)	335
BmsI	GCATC	1 cut(s)	510
BpmI	CTGGAG	1 cut(s)	114
BsaBI	GATNNNNATC	2 cut(s)	174, 419
BsaJI	CCNNGG	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bse8I	GATNNNNATC	2 cut(s)	174, 419
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	4 cut(s)	100, 235, 343, 597
BseJI	GATNNNNATC	2 cut(s)	174, 419
BseMII	CTCAG	3 cut(s)	152, 214, 591
BseXI	GCAGC	1 cut(s)	121
Bsh1236I	CGCG	2 cut(s)	103, 516
BsiHKCI	CYCGRG	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	596
BsmAI	GTCTC	2 cut(s)	383, 549
BsmFI	GGGAC	1 cut(s)	596
BsmI	GAATGC	2 cut(s)	443, 490
BsoBI	CYCGRG	1 cut(s)	84
Bsp1407I	TGTACA	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	340, 694
BspACI	CCGC	4 cut(s)	227, 441, 514, 637
BspCNI	CTCAG	3 cut(s)	151, 213, 590
BspFNI	CGCG	2 cut(s)	103, 516
BspLI	GGNNCC	1 cut(s)	690
BspTI	CTTAAG	1 cut(s)	563
BsrBI	CCGCTC	1 cut(s)	637
BsrGI	TGTACA	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	2 cut(s)	340, 694
BssNAI	GTATAC	1 cut(s)	627
Bst1107I	GTATAC	1 cut(s)	627
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	4 cut(s)	67, 372, 560, 616
Bst6I	CTCTTC	1 cut(s)	644
BstAFI	CTTAAG	1 cut(s)	563
BstAUI	TGTACA	1 cut(s)	157
BstDEI	CTNAG	3 cut(s)	138, 200, 577
BstF5I	GGATG	4 cut(s)	100, 235, 343, 597
BstFNI	CGCG	2 cut(s)	103, 516
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	2 cut(s)	343, 697
BstMAI	GTCTC	2 cut(s)	383, 549
BstMBI	GATC	2 cut(s)	340, 694
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 549
BstNI	CCWGG	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	333
BstSFI	CTRYAG	1 cut(s)	66
BstUI	CGCG	2 cut(s)	103, 516
BstV1I	GCAGC	1 cut(s)	121
BstXI	CCANNNNNNTGG	1 cut(s)	182
BstZ17I	GTATAC	1 cut(s)	627
BtsCI	GGATG	4 cut(s)	100, 235, 343, 597
BtsIMutI	CAGTG	1 cut(s)	63
CfoI	GCGC	1 cut(s)	103
Csp6I	GTAC	5 cut(s)	124, 158, 186, 373, 486
CviAII	CATG	4 cut(s)	217, 466, 540, 728
CviJI	RGCY	7 cut(s)	35, 44, 71, 118, 134, 406, 676
CviKI_1	RGCY	7 cut(s)	35, 44, 71, 118, 134, 406, 676
CviQI	GTAC	5 cut(s)	124, 158, 186, 373, 486
DdeI	CTNAG	3 cut(s)	138, 200, 577
DpnI	GATC	2 cut(s)	342, 696
DpnII	GATC	2 cut(s)	340, 694
Eam1104I	CTCTTC	1 cut(s)	644
EarI	CTCTTC	1 cut(s)	644
Eco88I	CYCGRG	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	333
EcoT22I	ATGCAT	1 cut(s)	503
FaeI	CATG	4 cut(s)	220, 469, 543, 731
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	4 cut(s)	216, 465, 539, 727
FauI	CCCGC	2 cut(s)	434, 630
FblI	GTMKAC	1 cut(s)	626
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	4 cut(s)	107, 242, 350, 604
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	2 cut(s)	314, 683
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	114
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	4 cut(s)	220, 469, 543, 731
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HinfI	GANTC	2 cut(s)	23, 536
Hpy166II	GTNNAC	5 cut(s)	126, 188, 347, 574, 627
Hpy188I	TCNGA	6 cut(s)	30, 203, 210, 412, 535, 610
Hpy188III	TCNNGA	4 cut(s)	38, 86, 424, 692
Hpy8I	GTNNAC	5 cut(s)	126, 188, 347, 574, 627
Hpy99I	CGWCG	1 cut(s)	304
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	4 cut(s)	67, 372, 560, 616
HpyCH4V	TGCA	2 cut(s)	363, 501
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 549
HpyF3I	CTNAG	3 cut(s)	138, 200, 577
Hsp92II	CATG	4 cut(s)	220, 469, 543, 731
HspAI	GCGC	1 cut(s)	101
Kzo9I	GATC	2 cut(s)	340, 694
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	6 cut(s)	144, 168, 320, 347, 564, 705
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	1 cut(s)	510
MaeI	CTAG	2 cut(s)	314, 683
MaeIII	GTNAC	2 cut(s)	306, 509
MalI	GATC	2 cut(s)	342, 696
MbiI	CCGCTC	1 cut(s)	637
MboI	GATC	2 cut(s)	340, 694
MboII	GAAGA	4 cut(s)	443, 446, 661, 702
MfeI	CAATTG	1 cut(s)	630
MluCI	AATT	2 cut(s)	481, 630
MnlI	CCTC	6 cut(s)	93, 108, 314, 522, 645, 690
Mph1103I	ATGCAT	1 cut(s)	503
MseI	TTAA	5 cut(s)	18, 273, 564, 596, 618
MspA1I	CMGCKG	1 cut(s)	134
MspCI	CTTAAG	1 cut(s)	563
MspR9I	CCNGG	1 cut(s)	335
MunI	CAATTG	1 cut(s)	630
Mva1269I	GAATGC	2 cut(s)	443, 490
MvaI	CCWGG	1 cut(s)	335
MvnI	CGCG	2 cut(s)	103, 516
MwoI	GCNNNNNNNGC	2 cut(s)	41, 549
NdeII	GATC	2 cut(s)	340, 694
NlaIII	CATG	4 cut(s)	220, 469, 543, 731
NlaIV	GGNNCC	1 cut(s)	690
NmeAIII	GCCGAG	1 cut(s)	578
NsiI	ATGCAT	1 cut(s)	503
PctI	GAATGC	2 cut(s)	443, 490
PfeI	GAWTC	2 cut(s)	23, 536
PkrI	GCNGC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	690
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	5 cut(s)	125, 159, 187, 374, 487
RsaNI	GTAC	5 cut(s)	124, 158, 186, 373, 486
SaqAI	TTAA	5 cut(s)	18, 273, 564, 596, 618
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	2 cut(s)	340, 694
ScrFI	CCNGG	1 cut(s)	335
SfaNI	GCATC	1 cut(s)	510
SfcI	CTRYAG	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	2 cut(s)	481, 630
SsiI	CCGC	4 cut(s)	227, 441, 514, 637
SspMI	CTAG	2 cut(s)	314, 683
StyD4I	CCNGG	1 cut(s)	333
TaaI	ACNGT	4 cut(s)	67, 372, 560, 616
TaqI	TCGA	1 cut(s)	423
TaqII	GACCGA	1 cut(s)	182
TasI	AATT	2 cut(s)	481, 630
TatI	WGTACW	1 cut(s)	157
TfiI	GAWTC	2 cut(s)	23, 536
Tru1I	TTAA	5 cut(s)	18, 273, 564, 596, 618
Tru9I	TTAA	5 cut(s)	18, 273, 564, 596, 618
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	473
TspGWI	ACGGA	1 cut(s)	288
TspRI	CASTG	1 cut(s)	70
Vha464I	CTTAAG	1 cut(s)	563
XmiI	GTMKAC	1 cut(s)	626
XspI	CTAG	2 cut(s)	314, 683
Zsp2I	ATGCAT	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.