Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007024

Physical Location & Seq

Genomic Coordinates Reverse (-)

54495758 .. 54496751

Gene Structure 994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0396700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTTTCTTTCGGCTTATCGAGACAAGTCTGGGACTTTGGATGTCATTGAGGAAAAGATTGCAAGAGCAACTATGATTCCCAGGACCCATGGAGAGGCATTCAACGTCTTGCGTTATGAGATTGGGCAGAAGTATAATTCTCATTATGATGCATTCCACCCGGAGGAATATGGTCCACAGACAAGCCAAAGGGTTGTATCATTCCTGTTGTATTTAACTGATGTTGAAGAAGGTGGGGAAACAATGTTTCCATACGAGGCAAGATTCTTATTTTCTCTTTCTTTCTTTCAATGGCTCTTTTTGGTTCCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

104

Amino Acids

12.27

Weight (kDa)

5.06

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_3	PF13640	35 - 83	6.5e-08	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47160 AT3G47160 AT3G47160 AT5G58787 AT5G58787
fragaria_vesca	FvH4_3g38470
malus_domestica	MD03G1071600.v1.1 MD11G1075300.v1.1
prunus_persica	Prupe.6G058200_v2.0.a1 Prupe.6G058200_v2.0.a1 Prupe.6G058200_v2.0.a1 Prupe.6G058200_v2.0.a1
pyrus_communis	pycom03g05790 pycom11g06260
rosa_chinensis	RchiOBHm_Chr5g0069171
rosa_laevigata	RLG00000036042
rosa_multiflora	Rmu_sc0000936.1_g000016
rosa_roxburghii	Rroxscaffold_1G00011630
rosa_rugosa	Rorug05G0396600 Rorug05G0396700
rosa_samantha	Rh5BG472400 Rh5CG494700 Rh5DG484900
rosa_wichuraiana	Rw0G006020 Rw5G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	2 cut(s)	94, 163
AgsI	TTSAA	3 cut(s)	103, 227, 290
AjnI	CCWGG	1 cut(s)	80
Alw26I	GTCTC	1 cut(s)	15
AspS9I	GGNCC	2 cut(s)	84, 173
AsuC2I	CCSGG	1 cut(s)	161
AvaII	GGWCC	2 cut(s)	84, 173
BciT130I	CCWGG	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	15
Bme1390I	CCNGG	2 cut(s)	82, 161
Bme18I	GGWCC	2 cut(s)	84, 173
BmgT120I	GGNCC	2 cut(s)	84, 173
BmiI	GGNNCC	2 cut(s)	86, 306
BmrFI	CCNGG	2 cut(s)	82, 161
BmsI	GCATC	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	161
BsaJI	CCNNGG	3 cut(s)	80, 88, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 163
BseBI	CCWGG	1 cut(s)	82
BseDI	CCNNGG	3 cut(s)	80, 88, 308
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	2 cut(s)	94, 163
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	94, 163
BsmAI	GTCTC	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	46
BsmI	GAATGC	2 cut(s)	98, 152
Bsp19I	CCATGG	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	86, 306
BssECI	CCNNGG	3 cut(s)	80, 88, 308
BssT1I	CCWWGG	2 cut(s)	88, 308
Bst2UI	CCWGG	1 cut(s)	82
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	46
BstMAI	GTCTC	1 cut(s)	15
BstNI	CCWGG	1 cut(s)	82
BstSCI	CCNGG	2 cut(s)	80, 159
BtgI	CCRYGG	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	84, 173
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	3 cut(s)	14, 186, 295
CviKI_1	RGCY	3 cut(s)	14, 186, 295
Eco130I	CCWWGG	2 cut(s)	88, 308
Eco47I	GGWCC	2 cut(s)	84, 173
EcoO109I	RGGNCCY	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	80
EcoT14I	CCWWGG	2 cut(s)	88, 308
EcoT22I	ATGCAT	1 cut(s)	154
ErhI	CCWWGG	2 cut(s)	88, 308
FaeI	CATG	1 cut(s)	92
FaiI	YATR	7 cut(s)	74, 90, 117, 135, 147, 171, 253
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	1 cut(s)	88
FokI	GGATG	1 cut(s)	53
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	1 cut(s)	92
HinfI	GANTC	2 cut(s)	76, 264
HpaII	CCGG	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	2 cut(s)	62, 152
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	92
LpnPI	CCDG	5 cut(s)	15, 67, 94, 174, 218
LweI	GCATC	1 cut(s)	139
MaeII	ACGT	1 cut(s)	105
MboII	GAAGA	1 cut(s)	239
MluCI	AATT	1 cut(s)	136
MnlI	CCTC	4 cut(s)	43, 88, 157, 250
Mph1103I	ATGCAT	1 cut(s)	154
MseI	TTAA	1 cut(s)	215
MslI	CAYNNNNRTG	1 cut(s)	147
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	2 cut(s)	82, 161
Mva1269I	GAATGC	2 cut(s)	98, 152
MvaI	CCWGG	1 cut(s)	82
NciI	CCSGG	1 cut(s)	161
NcoI	CCATGG	1 cut(s)	88
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	2 cut(s)	86, 306
NsiI	ATGCAT	1 cut(s)	154
PctI	GAATGC	2 cut(s)	98, 152
PfeI	GAWTC	2 cut(s)	76, 264
PpuMI	RGGWCCY	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	80
PspN4I	GGNNCC	2 cut(s)	86, 306
PspPI	GGNCC	2 cut(s)	84, 173
PspPPI	RGGWCCY	1 cut(s)	84
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	215
Sau96I	GGNCC	2 cut(s)	84, 173
ScrFI	CCNGG	2 cut(s)	82, 161
SetI	ASST	2 cut(s)	108, 235
SfaNI	GCATC	1 cut(s)	139
SinI	GGWCC	2 cut(s)	84, 173
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	1 cut(s)	136
StyD4I	CCNGG	2 cut(s)	80, 159
StyI	CCWWGG	2 cut(s)	88, 308
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	19
TasI	AATT	1 cut(s)	136
TfiI	GAWTC	2 cut(s)	76, 264
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
VpaK11BI	GGWCC	2 cut(s)	84, 173
Zsp2I	ATGCAT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.