Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007024

Physical Location & Seq

Genomic Coordinates Reverse (-)

74194720 .. 74197593

Gene Structure 2874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G042340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGGAAAATCGTACAAGGACTCTCTAAAGGCGCTCGAAGCAGATATCCAACACGCCAATACTCTGGCTTTAGATTATCCGAGGGAGAAAGATGGAGCACGACTTCAGATGAGACTATCCTACAGTCCGGTGGCGAATTTATTTCTCTTTCTTGTTCAGTGGACGGATTGCCAGCTTGCTGGGGCCCTTGGCTTGCTTAGAATTCTTATTTATGTGACTTATCCAGATGGAAAGACCACCATGTCAATTTACGAAAGGAGGGCCAGCGTTAAAGAATTTTATGGGGTGATATTTCCTTCTTTGTTGCAACTTCAAAAGGGCATCACCGATATGGAGGACAGGAAACAAAAAGAGGTTTGTACTGTCAGGTTCAGGAGGAAAGATGAGTTGGAGAGAGGAAAGCTCTCTGAAATTGACATGGAAAGAGAAGAAGAGTGTGGAATTTGCATGGAGTTGAACAGCAAAGTTGTGTTGCCTAACTGCAGTCATTCATTGTGTTTGAAGTGTTACCGAGATTGGCGTGGGCGGTCTCAGTCATGCCCCTTTTGTCGTGATAGTCTTAAAAGAGTAAATTCAGGCGACCTTTGGATTTACACAGAAAAATCTGATGCTATCGATCTATCATCAATCTTAAGAGAGGACCGCAAGAGATTATTTATGTACATTGATAAGTTGCCTCTAGTTGTTCCAGATCCTGTATATCTTCCCTATGATTCTCATGTCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

242

Amino Acids

28.16

Weight (kDa)

8.3

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	143 - 189	2.7e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	145 - 184	3.7e-08	Ring finger domain
zf-RING_5	PF14634	145 - 184	5.5e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47160 AT3G47160 AT3G47160 AT5G58787 AT5G58787
fragaria_vesca	FvH4_3g38470
malus_domestica	MD03G1071600.v1.1 MD11G1075300.v1.1
prunus_persica	Prupe.6G058200_v2.0.a1 Prupe.6G058200_v2.0.a1 Prupe.6G058200_v2.0.a1 Prupe.6G058200_v2.0.a1
pyrus_communis	pycom03g05790 pycom11g06260
rosa_chinensis	RchiOBHm_Chr5g0069171
rosa_laevigata	RLG00000036042
rosa_multiflora	Rmu_sc0000936.1_g000016
rosa_roxburghii	Rroxscaffold_1G00011630
rosa_rugosa	Rorug05G0396600 Rorug05G0396700
rosa_samantha	Rh5BG472400 Rh5CG494700 Rh5DG484900
rosa_wichuraiana	Rw0G006020 Rw5G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	241
AciI	CCGC	2 cut(s)	526, 643
AclWI	GGATC	1 cut(s)	686
AcsI	RAATTY	5 cut(s)	136, 201, 275, 441, 571
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	3 cut(s)	14, 361, 662
AflII	CTTAAG	1 cut(s)	631
AgsI	TTSAA	3 cut(s)	314, 457, 502
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AluBI	AGCT	2 cut(s)	175, 403
AluI	AGCT	2 cut(s)	175, 403
Alw21I	GWGCWC	1 cut(s)	100
Alw26I	GTCTC	2 cut(s)	106, 534
AlwI	GGATC	1 cut(s)	686
AlwNI	CAGNNNCTG	1 cut(s)	695
AoxI	GGCC	2 cut(s)	183, 261
ApaI	GGGCCC	1 cut(s)	187
ApoI	RAATTY	5 cut(s)	136, 201, 275, 441, 571
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	4 cut(s)	183, 184, 261, 640
AsuHPI	GGTGA	2 cut(s)	298, 316
AvaII	GGWCC	1 cut(s)	640
BaeGI	GKGCMC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	100
BccI	CCATC	2 cut(s)	86, 221
BcoDI	GTCTC	2 cut(s)	106, 534
BfaI	CTAG	1 cut(s)	680
BfmI	CTRYAG	2 cut(s)	121, 481
BfoI	RGCGCY	1 cut(s)	35
BfrI	CTTAAG	1 cut(s)	631
Bme18I	GGWCC	1 cut(s)	640
BmgT120I	GGNCC	4 cut(s)	183, 184, 261, 640
BmiI	GGNNCC	2 cut(s)	184, 185
BmsI	GCATC	2 cut(s)	330, 598
BplI	GAGNNNNNCTC	2 cut(s)	387, 419
Bsa29I	ATCGAT	1 cut(s)	615
BsaI	GGTCTC	1 cut(s)	534
BsaJI	CCNNGG	2 cut(s)	80, 187
BsaWI	WCCGGW	2 cut(s)	127, 723
BseCI	ATCGAT	1 cut(s)	615
BseDI	CCNNGG	2 cut(s)	80, 187
BseMII	CTCAG	1 cut(s)	545
BseSI	GKGCMC	1 cut(s)	187
BseYI	CCCAGC	1 cut(s)	179
BshFI	GGCC	2 cut(s)	185, 263
BshVI	ATCGAT	1 cut(s)	615
BsiHKAI	GWGCWC	1 cut(s)	100
BsiSI	CCGG	2 cut(s)	128, 724
BsmAI	GTCTC	2 cut(s)	106, 534
BsnI	GGCC	2 cut(s)	185, 263
Bso31I	GGTCTC	1 cut(s)	534
Bsp120I	GGGCCC	1 cut(s)	183
Bsp1286I	GDGCHC	2 cut(s)	100, 187
Bsp1407I	TGTACA	1 cut(s)	660
Bsp143I	GATC	2 cut(s)	616, 691
BspACI	CCGC	2 cut(s)	526, 643
BspANI	GGCC	2 cut(s)	185, 263
BspCNI	CTCAG	1 cut(s)	544
BspDI	ATCGAT	1 cut(s)	615
BspLI	GGNNCC	2 cut(s)	184, 185
BspMAI	CTGCAG	1 cut(s)	485
BspPI	GGATC	1 cut(s)	686
BspTI	CTTAAG	1 cut(s)	631
BspTNI	GGTCTC	1 cut(s)	534
BsrGI	TGTACA	1 cut(s)	660
BssECI	CCNNGG	2 cut(s)	80, 187
BssMI	GATC	2 cut(s)	616, 691
BssT1I	CCWWGG	1 cut(s)	187
Bst4CI	ACNGT	2 cut(s)	125, 364
Bst6I	CTCTTC	1 cut(s)	426
BstAFI	CTTAAG	1 cut(s)	631
BstAUI	TGTACA	1 cut(s)	660
BstC8I	GCNNGC	4 cut(s)	173, 177, 194, 265
BstDEI	CTNAG	2 cut(s)	197, 531
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	2 cut(s)	619, 694
BstMAI	GTCTC	2 cut(s)	106, 534
BstMBI	GATC	2 cut(s)	616, 691
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstSFI	CTRYAG	2 cut(s)	121, 481
BstSLI	GKGCMC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	691
BstXI	CCANNNNNNTGG	2 cut(s)	64, 179
BstYI	RGATCY	1 cut(s)	691
Bsu15I	ATCGAT	1 cut(s)	615
BsuRI	GGCC	2 cut(s)	185, 263
BsuTUI	ATCGAT	1 cut(s)	615
BtsIMutI	CAGTG	1 cut(s)	164
Cac8I	GCNNGC	4 cut(s)	173, 177, 194, 265
CaiI	CAGNNNCTG	1 cut(s)	695
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	4 cut(s)	183, 184, 261, 640
ClaI	ATCGAT	1 cut(s)	615
Csp6I	GTAC	3 cut(s)	13, 360, 661
CviAII	CATG	5 cut(s)	241, 418, 448, 537, 719
CviJI	RGCY	6 cut(s)	68, 175, 185, 192, 263, 403
CviKI_1	RGCY	6 cut(s)	68, 175, 185, 192, 263, 403
CviQI	GTAC	3 cut(s)	13, 360, 661
DdeI	CTNAG	2 cut(s)	197, 531
DpnI	GATC	2 cut(s)	618, 693
DpnII	GATC	2 cut(s)	616, 691
DrdI	GACNNNNNNGTC	1 cut(s)	241
DseDI	GACNNNNNNGTC	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco130I	CCWWGG	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	187
Eco31I	GGTCTC	1 cut(s)	534
Eco32I	GATATC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	640
Eco57I	CTGAAG	1 cut(s)	89
EcoO109I	RGGNCCY	2 cut(s)	183, 184
EcoRI	GAATTC	1 cut(s)	201
EcoRV	GATATC	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	5 cut(s)	244, 421, 451, 540, 722
FatI	CATG	5 cut(s)	240, 417, 447, 536, 718
FriOI	GRGCYC	1 cut(s)	187
FspBI	CTAG	1 cut(s)	680
GlaI	GCGC	1 cut(s)	33
GsaI	CCCAGC	1 cut(s)	183
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	2 cut(s)	185, 263
HapII	CCGG	2 cut(s)	128, 724
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	5 cut(s)	244, 421, 451, 540, 722
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	2 cut(s)	20, 713
HpaII	CCGG	2 cut(s)	128, 724
HphI	GGTGA	2 cut(s)	298, 316
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	4 cut(s)	81, 108, 409, 607
Hpy188III	TCNNGA	4 cut(s)	224, 373, 551, 689
Hpy8I	GTNNAC	1 cut(s)	162
HpyAV	CCTTC	1 cut(s)	306
HpyCH4III	ACNGT	2 cut(s)	125, 364
HpyCH4V	TGCA	3 cut(s)	307, 447, 483
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	2 cut(s)	197, 531
Hsp92II	CATG	5 cut(s)	244, 421, 451, 540, 722
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	2 cut(s)	616, 691
LmnI	GCTCC	1 cut(s)	95
LweI	GCATC	2 cut(s)	330, 598
MaeI	CTAG	1 cut(s)	680
MaeIII	GTNAC	2 cut(s)	214, 506
MalI	GATC	2 cut(s)	618, 693
MboI	GATC	2 cut(s)	616, 691
MboII	GAAGA	3 cut(s)	440, 443, 695
MflI	RGATCY	1 cut(s)	691
MhlI	GDGCHC	2 cut(s)	100, 187
MluCI	AATT	7 cut(s)	136, 201, 246, 275, 411, 441, 571
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	2 cut(s)	73, 369
MnlI	CCTC	8 cut(s)	75, 252, 328, 346, 369, 389, 631, 687
MseI	TTAA	3 cut(s)	270, 561, 632
MslI	CAYNNNNRTG	1 cut(s)	329
MspCI	CTTAAG	1 cut(s)	631
MspI	CCGG	2 cut(s)	128, 724
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	2 cut(s)	616, 691
NlaIII	CATG	5 cut(s)	244, 421, 451, 540, 722
NlaIV	GGNNCC	2 cut(s)	184, 185
NmuCI	GTSAC	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	713
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PspFI	CCCAGC	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	184, 185
PspOMI	GGGCCC	1 cut(s)	183
PspPI	GGNCC	4 cut(s)	183, 184, 261, 640
PstI	CTGCAG	1 cut(s)	485
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	691
RsaI	GTAC	3 cut(s)	14, 361, 662
RsaNI	GTAC	3 cut(s)	13, 360, 661
RseI	CAYNNNNRTG	1 cut(s)	329
SaqAI	TTAA	3 cut(s)	270, 561, 632
Sau3AI	GATC	2 cut(s)	616, 691
Sau96I	GGNCC	4 cut(s)	183, 184, 261, 640
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	2 cut(s)	100, 187
SetI	ASST	5 cut(s)	177, 357, 371, 405, 585
SfaNI	GCATC	2 cut(s)	330, 598
SfcI	CTRYAG	2 cut(s)	121, 481
SinI	GGWCC	1 cut(s)	640
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
Sse9I	AATT	7 cut(s)	136, 201, 246, 275, 411, 441, 571
SsiI	CCGC	2 cut(s)	526, 643
SspMI	CTAG	1 cut(s)	680
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	125, 364
TaqI	TCGA	2 cut(s)	36, 615
TasI	AATT	7 cut(s)	136, 201, 246, 275, 411, 441, 571
TatI	WGTACW	2 cut(s)	359, 660
TfiI	GAWTC	1 cut(s)	713
Tru1I	TTAA	3 cut(s)	270, 561, 632
Tru9I	TTAA	3 cut(s)	270, 561, 632
TscAI	CASTG	1 cut(s)	164
TseFI	GTSAC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	1 cut(s)	480
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	164
Vha464I	CTTAAG	1 cut(s)	631
VpaK11BI	GGWCC	1 cut(s)	640
XapI	RAATTY	5 cut(s)	136, 201, 275, 441, 571
XspI	CTAG	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.