Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007024

Physical Location & Seq

Genomic Coordinates Reverse (-)

32831181 .. 32834339

Gene Structure 3159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g38470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGGAAAATCGTACAAGGACTCTCTTAAGGCGCTCGAAGCTGATATTCAACACGTCAATACTCTGGCTTTAGATTATCCGAGGGAGAAAGATGGAGCAAGACTTCAGATGAGACTATCCTACAGTCCGGTGGCGAATTTATTTCTCTTTCTTGTTCAGTGGACGGATTGCCAGCTTGCTGGGGCCCTTGGCTTGCTTAGGATTCTTATTTATGTGACTTATCCTGATGGAAAGACCACCATGTCGATTTACGAAAGGAGGGCCAGCATTAAAGAATTTTACGGGGTGATATTTCCTTCTTTGTTGCAACTTCAAAAGGGCATCACGGATTTGGAGGACAGGAAACAAAAAGAGGTTTGTACTGTCAGGTTCAGAAGAAAGGATGAGTTGGAGAGAGGAAAACTCTCTGAAATCGACATGGAAAGAGAAGAAGAGTGTGGAATTTGCATGGAGGTGAACAACAAAGTTGTGTTGCCTAACTGCAGTCACTCATTGTGTTTGAAGTGTTATCGGGATTGGCGTGGACGGTCTCAGTCATGCCCCTTTTGTCGTGATAGTCTTAAAAGAGTAAACTCAGGCGACCTTTGGATTTACACGGAAAAATGTGATGCTATTGACCTATCAACAATCTTAAGAGAAGACCGCAAGAGACTATTTATGTACATTGATAAGTTGCCTCTTGTCGTTCCAGATCCTATATATCTTCCCTACGATTCGCATGTTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

243

Amino Acids

28.24

Weight (kDa)

8.26

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	143 - 189	7e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	145 - 184	1.9e-08	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47160 AT3G47160 AT3G47160 AT5G58787 AT5G58787
fragaria_vesca	FvH4_3g38470
malus_domestica	MD03G1071600.v1.1 MD11G1075300.v1.1
prunus_persica	Prupe.6G058200_v2.0.a1 Prupe.6G058200_v2.0.a1 Prupe.6G058200_v2.0.a1 Prupe.6G058200_v2.0.a1
pyrus_communis	pycom03g05790 pycom11g06260
rosa_chinensis	RchiOBHm_Chr5g0069171
rosa_laevigata	RLG00000036042
rosa_multiflora	Rmu_sc0000936.1_g000016
rosa_roxburghii	Rroxscaffold_1G00011630
rosa_rugosa	Rorug05G0396600 Rorug05G0396700
rosa_samantha	Rh5BG472400 Rh5CG494700 Rh5DG484900
rosa_wichuraiana	Rw0G006020 Rw5G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	241
AciI	CCGC	1 cut(s)	643
AclWI	GGATC	1 cut(s)	686
AcsI	RAATTY	3 cut(s)	136, 275, 441
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	3 cut(s)	14, 361, 662
AflII	CTTAAG	2 cut(s)	26, 631
AflIII	ACRYGT	1 cut(s)	52
AgsI	TTSAA	3 cut(s)	50, 314, 502
AjiI	CACGTC	1 cut(s)	55
AluBI	AGCT	2 cut(s)	41, 175
AluI	AGCT	2 cut(s)	41, 175
Alw26I	GTCTC	3 cut(s)	106, 534, 643
AlwI	GGATC	1 cut(s)	686
AoxI	GGCC	2 cut(s)	183, 261
ApaI	GGGCCC	1 cut(s)	187
ApoI	RAATTY	3 cut(s)	136, 275, 441
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	3 cut(s)	183, 184, 261
AsuHPI	GGTGA	2 cut(s)	298, 466
BaeGI	GKGCMC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	187
BbsI	GAAGAC	1 cut(s)	645
BccI	CCATC	2 cut(s)	86, 221
BcoDI	GTCTC	3 cut(s)	106, 534, 643
BfmI	CTRYAG	2 cut(s)	121, 481
BfoI	RGCGCY	1 cut(s)	35
BfrI	CTTAAG	2 cut(s)	26, 631
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	3 cut(s)	183, 184, 261
BmiI	GGNNCC	2 cut(s)	184, 185
BmsI	GCATC	2 cut(s)	330, 598
BpiI	GAAGAC	1 cut(s)	645
BplI	GAGNNNNNCTC	2 cut(s)	387, 419
Bpu10I	CCTNAGC	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	534
BsaJI	CCNNGG	2 cut(s)	80, 187
BsaWI	WCCGGW	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	80, 187
BseGI	GGATG	1 cut(s)	388
BseMII	CTCAG	2 cut(s)	545, 588
BseSI	GKGCMC	1 cut(s)	187
BseYI	CCCAGC	1 cut(s)	179
BshFI	GGCC	2 cut(s)	185, 263
BsiSI	CCGG	1 cut(s)	128
BsmAI	GTCTC	3 cut(s)	106, 534, 643
BsnI	GGCC	2 cut(s)	185, 263
Bso31I	GGTCTC	1 cut(s)	534
Bsp120I	GGGCCC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp1407I	TGTACA	1 cut(s)	660
Bsp143I	GATC	1 cut(s)	691
BspACI	CCGC	1 cut(s)	643
BspANI	GGCC	2 cut(s)	185, 263
BspCNI	CTCAG	2 cut(s)	544, 587
BspLI	GGNNCC	2 cut(s)	184, 185
BspMAI	CTGCAG	1 cut(s)	485
BspPI	GGATC	1 cut(s)	686
BspTI	CTTAAG	2 cut(s)	26, 631
BspTNI	GGTCTC	1 cut(s)	534
BsrGI	TGTACA	1 cut(s)	660
BssECI	CCNNGG	2 cut(s)	80, 187
BssMI	GATC	1 cut(s)	691
BssT1I	CCWWGG	1 cut(s)	187
Bst4CI	ACNGT	3 cut(s)	125, 364, 528
Bst6I	CTCTTC	1 cut(s)	426
BstAFI	CTTAAG	2 cut(s)	26, 631
BstAUI	TGTACA	1 cut(s)	660
BstC8I	GCNNGC	4 cut(s)	173, 177, 194, 265
BstDEI	CTNAG	3 cut(s)	197, 531, 574
BstF5I	GGATG	1 cut(s)	388
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	1 cut(s)	694
BstMAI	GTCTC	3 cut(s)	106, 534, 643
BstMBI	GATC	1 cut(s)	691
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	722
BstSFI	CTRYAG	2 cut(s)	121, 481
BstSLI	GKGCMC	1 cut(s)	187
BstV2I	GAAGAC	1 cut(s)	645
BstX2I	RGATCY	1 cut(s)	691
BstXI	CCANNNNNNTGG	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	691
BsuRI	GGCC	2 cut(s)	185, 263
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	164
Cac8I	GCNNGC	4 cut(s)	173, 177, 194, 265
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	3 cut(s)	183, 184, 261
Csp6I	GTAC	3 cut(s)	13, 360, 661
CviAII	CATG	5 cut(s)	241, 418, 448, 537, 719
CviJI	RGCY	6 cut(s)	41, 68, 175, 185, 192, 263
CviKI_1	RGCY	6 cut(s)	41, 68, 175, 185, 192, 263
CviQI	GTAC	3 cut(s)	13, 360, 661
DdeI	CTNAG	3 cut(s)	197, 531, 574
DpnI	GATC	1 cut(s)	693
DpnII	GATC	1 cut(s)	691
DrdI	GACNNNNNNGTC	1 cut(s)	241
DseDI	GACNNNNNNGTC	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco130I	CCWWGG	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	187
Eco31I	GGTCTC	1 cut(s)	534
Eco57I	CTGAAG	1 cut(s)	89
EcoO109I	RGGNCCY	2 cut(s)	183, 184
EcoT14I	CCWWGG	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	5 cut(s)	244, 421, 451, 540, 722
FaiI	YATR	9 cut(s)	213, 242, 419, 449, 538, 659, 698, 700, 720
FatI	CATG	5 cut(s)	240, 417, 447, 536, 718
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	1 cut(s)	187
GlaI	GCGC	1 cut(s)	33
GsaI	CCCAGC	1 cut(s)	183
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	2 cut(s)	185, 263
HapII	CCGG	1 cut(s)	128
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	5 cut(s)	244, 421, 451, 540, 722
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HinfI	GANTC	3 cut(s)	20, 202, 713
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	2 cut(s)	298, 466
Hpy166II	GTNNAC	4 cut(s)	162, 457, 524, 571
Hpy188I	TCNGA	4 cut(s)	81, 108, 374, 409
Hpy188III	TCNNGA	4 cut(s)	224, 512, 551, 689
Hpy8I	GTNNAC	4 cut(s)	162, 457, 524, 571
HpyAV	CCTTC	1 cut(s)	306
HpyCH4III	ACNGT	3 cut(s)	125, 364, 528
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	3 cut(s)	307, 447, 483
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	3 cut(s)	197, 531, 574
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	5 cut(s)	244, 421, 451, 540, 722
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	1 cut(s)	691
LmnI	GCTCC	1 cut(s)	95
LweI	GCATC	2 cut(s)	330, 598
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	2 cut(s)	214, 485
MalI	GATC	1 cut(s)	693
MboI	GATC	1 cut(s)	691
MboII	GAAGA	5 cut(s)	387, 440, 443, 650, 695
MflI	RGATCY	1 cut(s)	691
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	3 cut(s)	136, 275, 441
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	7 cut(s)	75, 252, 328, 346, 389, 445, 687
MseI	TTAA	4 cut(s)	27, 270, 561, 632
MslI	CAYNNNNRTG	1 cut(s)	452
MspCI	CTTAAG	2 cut(s)	26, 631
MspI	CCGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	1 cut(s)	691
NlaIII	CATG	5 cut(s)	244, 421, 451, 540, 722
NlaIV	GGNNCC	2 cut(s)	184, 185
NmuCI	GTSAC	2 cut(s)	214, 485
NspI	RCATGY	1 cut(s)	722
PcsI	WCGNNNNNNNCGW	1 cut(s)	517
PfeI	GAWTC	2 cut(s)	202, 713
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PspFI	CCCAGC	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	184, 185
PspOMI	GGGCCC	1 cut(s)	183
PspPI	GGNCC	3 cut(s)	183, 184, 261
PstI	CTGCAG	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	691
RsaI	GTAC	3 cut(s)	14, 361, 662
RsaNI	GTAC	3 cut(s)	13, 360, 661
RseI	CAYNNNNRTG	1 cut(s)	452
SaqAI	TTAA	4 cut(s)	27, 270, 561, 632
Sau3AI	GATC	1 cut(s)	691
Sau96I	GGNCC	3 cut(s)	183, 184, 261
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	8 cut(s)	43, 57, 177, 357, 371, 456, 585, 621
SfaNI	GCATC	2 cut(s)	330, 598
SfcI	CTRYAG	2 cut(s)	121, 481
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	2 cut(s)	26, 631
SmoI	CTYRAG	2 cut(s)	26, 631
Sse9I	AATT	3 cut(s)	136, 275, 441
SsiI	CCGC	1 cut(s)	643
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	3 cut(s)	125, 364, 528
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	3 cut(s)	36, 245, 414
TasI	AATT	3 cut(s)	136, 275, 441
TatI	WGTACW	2 cut(s)	359, 660
TfiI	GAWTC	2 cut(s)	202, 713
Tru1I	TTAA	4 cut(s)	27, 270, 561, 632
Tru9I	TTAA	4 cut(s)	27, 270, 561, 632
TscAI	CASTG	1 cut(s)	164
TseFI	GTSAC	2 cut(s)	214, 485
Tsp45I	GTSAC	2 cut(s)	214, 485
TspGWI	ACGGA	3 cut(s)	179, 341, 611
TspRI	CASTG	1 cut(s)	164
Vha464I	CTTAAG	2 cut(s)	26, 631
XapI	RAATTY	3 cut(s)	136, 275, 441
XceI	RCATGY	1 cut(s)	722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.