Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007024

Physical Location & Seq

Genomic Coordinates Forward (+)

4580836 .. 4583408

Gene Structure 2573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g05790.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGGAAAATCGTTTAGGGACTCTCTTAAAGCGCTTGAAGCAGATATTCAGCACGCCAATACTCTGGCCTTGGATTATCCGAGAGAGAAAGATGGAGCGCGTCTTCAGATGAGACTGTCTTACTGTCCGGCGGCCAACTTTTTCCTCTTCCTTGTCCAGTGGACTGACTGTCACCTCGCCGGAGCGCTCGGCTTGCTTCGAATGCTTATTTATATGACTTATCCAGATGGAAAGACCACCATGTCTGTTTATGAAAGGAAAGCCAGCATCAGAGAATTTTATGCTGTCATATTTCCTTCTTTGCTGCAACTTCAAAGGGGAATCACAGATGTGGAGGATAGGAAACAGAAAGAGATTTGCACTGCCAGATACAAAAGAAGGGATGAATCCGAGAGGGGAAAATTCTCTGAAATTGACTTTGAAAGAGAAGAAGAGTGTGGAATTTGCATGGAGGTGAACAGGAAAGTCGTTTTGCCTAACTGCACTCATACATTGTGTTTGAAGTGTTATCGAGACTGGCGTTGTAGGTCTCAGTCATGCCCCTTTTGTCGCGATAGTCTCAAAAGAGTCGACTCTGGTGACCTTTGGATCTACACTGAGAAATGCGATACTCTCGATTTATCAACAATCTTAAGAGAGGACCGCAAGAGACTATTTATGTACGTTGAGAAGCTACCTCTTGTTATGCCGGATCCTGTTTTTCTACCCTATGATTCTCATGTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

243

Amino Acids

28.49

Weight (kDa)

8.21

Isoelectric Point (pI)

57.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47160 AT3G47160 AT3G47160 AT5G58787 AT5G58787
fragaria_vesca	FvH4_3g38470
malus_domestica	MD03G1071600.v1.1 MD11G1075300.v1.1
prunus_persica	Prupe.6G058200_v2.0.a1 Prupe.6G058200_v2.0.a1 Prupe.6G058200_v2.0.a1 Prupe.6G058200_v2.0.a1
pyrus_communis	pycom03g05790 pycom11g06260
rosa_chinensis	RchiOBHm_Chr5g0069171
rosa_laevigata	RLG00000036042
rosa_multiflora	Rmu_sc0000936.1_g000016
rosa_roxburghii	Rroxscaffold_1G00011630
rosa_rugosa	Rorug05G0396600 Rorug05G0396700
rosa_samantha	Rh5BG472400 Rh5CG494700 Rh5DG484900
rosa_wichuraiana	Rw0G006020 Rw5G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	570
AccII	CGCG	2 cut(s)	100, 552
AciI	CCGC	2 cut(s)	131, 643
AclWI	GGATC	3 cut(s)	596, 686, 699
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	3 cut(s)	275, 401, 441
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	1 cut(s)	662
AfeI	AGCGCT	2 cut(s)	33, 186
AflII	CTTAAG	1 cut(s)	631
AgsI	TTSAA	4 cut(s)	38, 314, 422, 502
AhdI	GACNNNNNGTC	1 cut(s)	168
AleI	CACNNNNGTG	1 cut(s)	329
AluBI	AGCT	1 cut(s)	673
AluI	AGCT	1 cut(s)	673
Alw26I	GTCTC	5 cut(s)	106, 507, 534, 563, 643
AlwI	GGATC	3 cut(s)	596, 686, 699
Aor51HI	AGCGCT	2 cut(s)	33, 186
AoxI	GGCC	2 cut(s)	66, 132
ApeKI	GCWGC	1 cut(s)	304
ApoI	RAATTY	3 cut(s)	275, 401, 441
AspLEI	GCGC	3 cut(s)	34, 100, 187
AspS9I	GGNCC	1 cut(s)	640
AsuHPI	GGTGA	3 cut(s)	164, 466, 590
AsuII	TTCGAA	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	640
BamHI	GGATCC	1 cut(s)	691
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	2 cut(s)	86, 221
BcoDI	GTCTC	5 cut(s)	106, 507, 534, 563, 643
BfoI	RGCGCY	2 cut(s)	35, 188
BfrI	CTTAAG	1 cut(s)	631
BisI	GCNGC	2 cut(s)	132, 305
BlsI	GCNGC	2 cut(s)	133, 306
Bme18I	GGWCC	1 cut(s)	640
BmeRI	GACNNNNNGTC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	640
BmiI	GGNNCC	1 cut(s)	693
BmsI	GCATC	1 cut(s)	276
BpiI	GAAGAC	1 cut(s)	95
Bpu14I	TTCGAA	1 cut(s)	199
BsaI	GGTCTC	1 cut(s)	534
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	723
Bse1I	ACTGG	2 cut(s)	157, 521
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	388
BseMII	CTCAG	2 cut(s)	545, 588
BseNI	ACTGG	2 cut(s)	157, 521
BseXI	GCAGC	1 cut(s)	291
BsgI	GTGCAG	1 cut(s)	466
Bsh1236I	CGCG	2 cut(s)	100, 552
BshFI	GGCC	2 cut(s)	68, 134
BsiSI	CCGG	4 cut(s)	128, 180, 689, 724
BslFI	GGGAC	1 cut(s)	32
BsmAI	GTCTC	5 cut(s)	106, 507, 534, 563, 643
BsmFI	GGGAC	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	207
BsnI	GGCC	2 cut(s)	68, 134
Bso31I	GGTCTC	1 cut(s)	534
Bsp119I	TTCGAA	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	588, 691
Bsp68I	TCGCGA	1 cut(s)	552
BspACI	CCGC	2 cut(s)	131, 643
BspANI	GGCC	2 cut(s)	68, 134
BspCNI	CTCAG	2 cut(s)	544, 589
BspFNI	CGCG	2 cut(s)	100, 552
BspLI	GGNNCC	1 cut(s)	693
BspPI	GGATC	3 cut(s)	596, 686, 699
BspT104I	TTCGAA	1 cut(s)	199
BspTI	CTTAAG	1 cut(s)	631
BspTNI	GGTCTC	1 cut(s)	534
BsrI	ACTGG	2 cut(s)	157, 521
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	588, 691
BssT1I	CCWWGG	1 cut(s)	69
Bst4CI	ACNGT	3 cut(s)	117, 125, 170
Bst6I	CTCTTC	2 cut(s)	152, 426
BstAFI	CTTAAG	1 cut(s)	631
BstBI	TTCGAA	1 cut(s)	199
BstC8I	GCNNGC	3 cut(s)	54, 194, 265
BstDEI	CTNAG	2 cut(s)	531, 597
BstEII	GGTNACC	1 cut(s)	578
BstF5I	GGATG	1 cut(s)	388
BstFNI	CGCG	2 cut(s)	100, 552
BstH2I	RGCGCY	2 cut(s)	35, 188
BstHHI	GCGC	3 cut(s)	34, 100, 187
BstKTI	GATC	2 cut(s)	591, 694
BstMAI	GTCTC	5 cut(s)	106, 507, 534, 563, 643
BstMBI	GATC	2 cut(s)	588, 691
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 193, 202
BstPI	GGTNACC	1 cut(s)	578
BstUI	CGCG	2 cut(s)	100, 552
BstV1I	GCAGC	1 cut(s)	291
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	2 cut(s)	588, 691
BstXI	CCANNNNNNTGG	1 cut(s)	64
BstYI	RGATCY	2 cut(s)	588, 691
BsuRI	GGCC	2 cut(s)	68, 134
BtsCI	GGATG	1 cut(s)	388
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	3 cut(s)	164, 360, 594
BtuMI	TCGCGA	1 cut(s)	552
Cac8I	GCNNGC	3 cut(s)	54, 194, 265
CfoI	GCGC	3 cut(s)	34, 100, 187
Cfr13I	GGNCC	1 cut(s)	640
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	661
CviAII	CATG	4 cut(s)	241, 448, 537, 719
CviJI	RGCY	5 cut(s)	68, 134, 192, 263, 673
CviKI_1	RGCY	5 cut(s)	68, 134, 192, 263, 673
CviQI	GTAC	1 cut(s)	661
DdeI	CTNAG	2 cut(s)	531, 597
DpnI	GATC	2 cut(s)	590, 693
DpnII	GATC	2 cut(s)	588, 691
DrdI	GACNNNNNNGTC	1 cut(s)	241
DriI	GACNNNNNGTC	1 cut(s)	168
DseDI	GACNNNNNNGTC	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	2 cut(s)	152, 426
Eam1105I	GACNNNNNGTC	1 cut(s)	168
EarI	CTCTTC	2 cut(s)	152, 426
Eco130I	CCWWGG	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	640
Eco47III	AGCGCT	2 cut(s)	33, 186
Eco57I	CTGAAG	1 cut(s)	89
Eco91I	GGTNACC	1 cut(s)	578
EcoO65I	GGTNACC	1 cut(s)	578
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	4 cut(s)	244, 451, 540, 722
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	4 cut(s)	240, 447, 536, 718
FblI	GTMKAC	1 cut(s)	570
Fnu4HI	GCNGC	2 cut(s)	132, 305
FokI	GGATG	1 cut(s)	395
Fsp4HI	GCNGC	2 cut(s)	132, 305
GlaI	GCGC	3 cut(s)	33, 99, 186
GluI	GCNGC	2 cut(s)	132, 305
HaeII	RGCGCY	2 cut(s)	35, 188
HaeIII	GGCC	2 cut(s)	68, 134
HapII	CCGG	4 cut(s)	128, 180, 689, 724
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	3 cut(s)	34, 100, 187
Hin1II	CATG	4 cut(s)	244, 451, 540, 722
Hin6I	GCGC	3 cut(s)	32, 98, 185
HinP1I	GCGC	3 cut(s)	32, 98, 185
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HinfI	GANTC	6 cut(s)	20, 321, 386, 567, 572, 713
HpaII	CCGG	4 cut(s)	128, 180, 689, 724
HphI	GGTGA	3 cut(s)	164, 466, 590
Hpy166II	GTNNAC	3 cut(s)	162, 457, 571
Hpy188I	TCNGA	5 cut(s)	81, 108, 272, 391, 409
Hpy188III	TCNNGA	4 cut(s)	224, 512, 551, 614
Hpy8I	GTNNAC	3 cut(s)	162, 457, 571
HpyAV	CCTTC	2 cut(s)	306, 372
HpyCH4III	ACNGT	3 cut(s)	117, 125, 170
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	4 cut(s)	307, 360, 447, 483
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 193, 202
HpyF3I	CTNAG	2 cut(s)	531, 597
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	4 cut(s)	244, 451, 540, 722
HspAI	GCGC	3 cut(s)	32, 98, 185
Kzo9I	GATC	2 cut(s)	588, 691
LmnI	GCTCC	2 cut(s)	95, 182
Lsp1109I	GCAGC	1 cut(s)	291
LweI	GCATC	1 cut(s)	276
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	2 cut(s)	170, 578
MalI	GATC	2 cut(s)	590, 693
MboI	GATC	2 cut(s)	588, 691
MboII	GAAGA	4 cut(s)	95, 139, 440, 443
MflI	RGATCY	2 cut(s)	588, 691
MluCI	AATT	4 cut(s)	275, 401, 411, 441
MlyI	GAGTC	3 cut(s)	14, 566, 576
MnlI	CCTC	7 cut(s)	155, 185, 328, 387, 445, 631, 687
MseI	TTAA	2 cut(s)	27, 632
MslI	CAYNNNNRTG	2 cut(s)	329, 452
MspCI	CTTAAG	1 cut(s)	631
MspI	CCGG	4 cut(s)	128, 180, 689, 724
Mva1269I	GAATGC	1 cut(s)	207
MvnI	CGCG	2 cut(s)	100, 552
MwoI	GCNNNNNNNGC	3 cut(s)	38, 193, 202
NdeII	GATC	2 cut(s)	588, 691
NlaIII	CATG	4 cut(s)	244, 451, 540, 722
NlaIV	GGNNCC	1 cut(s)	693
NmeAIII	GCCGAG	1 cut(s)	168
NmuCI	GTSAC	2 cut(s)	170, 578
NruI	TCGCGA	1 cut(s)	552
NspV	TTCGAA	1 cut(s)	199
OliI	CACNNNNGTG	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	1 cut(s)	517
PctI	GAATGC	1 cut(s)	207
PfeI	GAWTC	3 cut(s)	321, 386, 713
PkrI	GCNGC	2 cut(s)	133, 306
PleI	GAGTC	3 cut(s)	14, 566, 575
PpsI	GAGTC	3 cut(s)	14, 566, 575
PspEI	GGTNACC	1 cut(s)	578
PspN4I	GGNNCC	1 cut(s)	693
PspPI	GGNCC	1 cut(s)	640
PsuI	RGATCY	2 cut(s)	588, 691
RruI	TCGCGA	1 cut(s)	552
RsaI	GTAC	1 cut(s)	662
RsaNI	GTAC	1 cut(s)	661
RseI	CAYNNNNRTG	2 cut(s)	329, 452
SalI	GTCGAC	1 cut(s)	569
SaqAI	TTAA	2 cut(s)	27, 632
SatI	GCNGC	2 cut(s)	132, 305
Sau3AI	GATC	2 cut(s)	588, 691
Sau96I	GGNCC	1 cut(s)	640
SchI	GAGTC	3 cut(s)	14, 566, 576
SetI	ASST	7 cut(s)	177, 456, 530, 585, 666, 675, 679
SfaNI	GCATC	1 cut(s)	276
SfuI	TTCGAA	1 cut(s)	199
SinI	GGWCC	1 cut(s)	640
SmiMI	CAYNNNNRTG	2 cut(s)	329, 452
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
Sse9I	AATT	4 cut(s)	275, 401, 411, 441
SsiI	CCGC	2 cut(s)	131, 643
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	3 cut(s)	117, 125, 170
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	4 cut(s)	199, 511, 570, 615
TasI	AATT	4 cut(s)	275, 401, 411, 441
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	3 cut(s)	321, 386, 713
Tru1I	TTAA	2 cut(s)	27, 632
Tru9I	TTAA	2 cut(s)	27, 632
TscAI	CASTG	3 cut(s)	164, 367, 601
TseFI	GTSAC	2 cut(s)	170, 578
TseI	GCWGC	1 cut(s)	304
Tsp45I	GTSAC	2 cut(s)	170, 578
TspDTI	ATGAA	2 cut(s)	267, 399
TspRI	CASTG	3 cut(s)	164, 367, 601
Vha464I	CTTAAG	1 cut(s)	631
VpaK11BI	GGWCC	1 cut(s)	640
XapI	RAATTY	3 cut(s)	275, 401, 441
XmiI	GTMKAC	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.