Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007024

Physical Location & Seq

Genomic Coordinates Forward (+)

4064353 .. 4069723

Gene Structure 5371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G058200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGGAAAATCGTTCAAGGACTCTCTTAAAGCGCTTGAAGCAGATATTCAGCACGCCAATACTGTGGCTTTAGATTATCCAAGGGAGAAAGATGGAGCACGTCTCCAGATGAGACTATCCTACTGTCCGGCGGCAAACTTTTTTCTCTTTCTTGTCCAGTGGACTGACTGTCACCTTGCTGGGGCCCTTGGTTTGCTCAGAATTCTTATTTATATGACGTATCCCGATGGAAAGACCACCATGTCAGTTTATGAAAGGAAAGCCAGCATTAGAGAATTTTATGGTGTGATATTTCCTTCTTTGCTGCAACTTCAAAGAGGCATCACAGATTTAGAGGATAGGAAGCAGAAAGAGGTTTGCACTGTCAGATACAAAAGAAAGGAGGAGTTGGACAAGGGAAAACTCTCTGAAATTGACATCGAAAGAGAAAAAGAGTGCGGAATTTGCATGGAGGTGAACAAAAAAGTTGTGTTACCTAACTGCAGTCATACATTGTGTTTGAAGTGTTACCGGGACTGGCGTGGGCGGTCTAAGTCGTGCCCCTTTTGTCGTGATAGCCTCAAAAGAGTCAACTCAGGCGACCTTTGGATCTACACTGAAAAATGTGATGTTATTGATTTATCCACAATATTAAGAGAGGACCGCAAGAGACTTTTTATGTACGTTGAAAGATTGCCTCTTGTTGTTCCAGACCCTGCATTTCTACCCTATGATTCTCATGTTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

243

Amino Acids

28.22

Weight (kDa)

8.79

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47160 AT3G47160 AT3G47160 AT5G58787 AT5G58787
fragaria_vesca	FvH4_3g38470
malus_domestica	MD03G1071600.v1.1 MD11G1075300.v1.1
prunus_persica	Prupe.6G058200_v2.0.a1 Prupe.6G058200_v2.0.a1 Prupe.6G058200_v2.0.a1 Prupe.6G058200_v2.0.a1
pyrus_communis	pycom03g05790 pycom11g06260
rosa_chinensis	RchiOBHm_Chr5g0069171
rosa_laevigata	RLG00000036042
rosa_multiflora	Rmu_sc0000936.1_g000016
rosa_roxburghii	Rroxscaffold_1G00011630
rosa_rugosa	Rorug05G0396600 Rorug05G0396700
rosa_samantha	Rh5BG472400 Rh5CG494700 Rh5DG484900
rosa_wichuraiana	Rw0G006020 Rw5G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	241
AciI	CCGC	4 cut(s)	131, 438, 526, 643
AclWI	GGATC	1 cut(s)	596
AcsI	RAATTY	3 cut(s)	201, 275, 441
AfaI	GTAC	1 cut(s)	662
AfeI	AGCGCT	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	5 cut(s)	16, 38, 314, 502, 668
AhdI	GACNNNNNGTC	1 cut(s)	168
AjiI	CACGTC	1 cut(s)	101
Alw21I	GWGCWC	1 cut(s)	100
Alw26I	GTCTC	3 cut(s)	106, 107, 643
AlwI	GGATC	1 cut(s)	596
AlwNI	CAGNNNCTG	1 cut(s)	695
Aor51HI	AGCGCT	1 cut(s)	33
AoxI	GGCC	1 cut(s)	183
ApaI	GGGCCC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	304
ApoI	RAATTY	3 cut(s)	201, 275, 441
AspLEI	GCGC	1 cut(s)	34
AspS9I	GGNCC	3 cut(s)	183, 184, 640
AsuC2I	CCSGG	1 cut(s)	512
AsuHPI	GGTGA	2 cut(s)	164, 466
AvaII	GGWCC	1 cut(s)	640
BaeGI	GKGCMC	2 cut(s)	187, 542
BanII	GRGCYC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	291
BccI	CCATC	2 cut(s)	86, 221
BciVI	GTATCC	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	512
BcoDI	GTCTC	3 cut(s)	106, 107, 643
BfmI	CTRYAG	1 cut(s)	481
BfoI	RGCGCY	1 cut(s)	35
BfuI	GTATCC	1 cut(s)	231
BisI	GCNGC	2 cut(s)	132, 305
BlsI	GCNGC	2 cut(s)	133, 306
Bme1390I	CCNGG	1 cut(s)	512
Bme18I	GGWCC	1 cut(s)	640
BmeRI	GACNNNNNGTC	1 cut(s)	168
BmgBI	CACGTC	1 cut(s)	101
BmgT120I	GGNCC	3 cut(s)	183, 184, 640
BmiI	GGNNCC	2 cut(s)	184, 185
BmrFI	CCNGG	1 cut(s)	512
BmsI	GCATC	1 cut(s)	330
BplI	GAGNNNNNCTC	2 cut(s)	87, 119
BpmI	CTGGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	512
BsaJI	CCNNGG	2 cut(s)	80, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	2 cut(s)	157, 521
BseDI	CCNNGG	2 cut(s)	80, 187
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	2 cut(s)	211, 588
BseNI	ACTGG	2 cut(s)	157, 521
BseRI	GAGGAG	1 cut(s)	398
BseSI	GKGCMC	2 cut(s)	187, 542
BseXI	GCAGC	1 cut(s)	291
BseYI	CCCAGC	1 cut(s)	179
BshFI	GGCC	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	100
BsiSI	CCGG	2 cut(s)	128, 511
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	3 cut(s)	106, 107, 643
BsmBI	CGTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	527
BsnI	GGCC	1 cut(s)	185
Bsp120I	GGGCCC	1 cut(s)	183
Bsp1286I	GDGCHC	3 cut(s)	100, 187, 542
Bsp143I	GATC	1 cut(s)	588
BspACI	CCGC	4 cut(s)	131, 438, 526, 643
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	2 cut(s)	210, 587
BspLI	GGNNCC	2 cut(s)	184, 185
BspMAI	CTGCAG	1 cut(s)	485
BspPI	GGATC	1 cut(s)	596
BsrI	ACTGG	2 cut(s)	157, 521
BssECI	CCNNGG	2 cut(s)	80, 187
BssMI	GATC	1 cut(s)	588
BssT1I	CCWWGG	2 cut(s)	80, 187
Bst4CI	ACNGT	4 cut(s)	64, 125, 170, 364
BstC8I	GCNNGC	2 cut(s)	54, 265
BstDEI	CTNAG	3 cut(s)	197, 531, 574
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	1 cut(s)	591
BstMAI	GTCTC	3 cut(s)	106, 107, 643
BstMBI	GATC	1 cut(s)	588
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 444
BstSCI	CCNGG	1 cut(s)	510
BstSFI	CTRYAG	1 cut(s)	481
BstSLI	GKGCMC	2 cut(s)	187, 542
BstV1I	GCAGC	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	588
BstXI	CCANNNNNNTGG	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	588
BsuI	GTATCC	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	185
BtrI	CACGTC	1 cut(s)	101
BtsIMutI	CAGTG	3 cut(s)	164, 360, 594
Cac8I	GCNNGC	2 cut(s)	54, 265
CaiI	CAGNNNCTG	1 cut(s)	695
CfoI	GCGC	1 cut(s)	34
Cfr13I	GGNCC	3 cut(s)	183, 184, 640
Csp6I	GTAC	1 cut(s)	661
CviAII	CATG	3 cut(s)	241, 448, 719
CviJI	RGCY	4 cut(s)	68, 185, 263, 558
CviKI_1	RGCY	4 cut(s)	68, 185, 263, 558
CviQI	GTAC	1 cut(s)	661
DdeI	CTNAG	3 cut(s)	197, 531, 574
DpnI	GATC	1 cut(s)	590
DpnII	GATC	1 cut(s)	588
DrdI	GACNNNNNNGTC	1 cut(s)	241
DriI	GACNNNNNGTC	1 cut(s)	168
DseDI	GACNNNNNNGTC	1 cut(s)	241
Eam1105I	GACNNNNNGTC	1 cut(s)	168
Eco130I	CCWWGG	2 cut(s)	80, 187
Eco24I	GRGCYC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	640
Eco47III	AGCGCT	1 cut(s)	33
EcoO109I	RGGNCCY	2 cut(s)	183, 184
EcoRI	GAATTC	1 cut(s)	201
EcoT14I	CCWWGG	2 cut(s)	80, 187
EcoT38I	GRGCYC	1 cut(s)	187
ErhI	CCWWGG	2 cut(s)	80, 187
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	3 cut(s)	244, 451, 722
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	3 cut(s)	240, 447, 718
Fnu4HI	GCNGC	2 cut(s)	132, 305
FriOI	GRGCYC	1 cut(s)	187
Fsp4HI	GCNGC	2 cut(s)	132, 305
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	2 cut(s)	132, 305
GsaI	CCCAGC	1 cut(s)	183
GsuI	CTGGAG	1 cut(s)	89
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	2 cut(s)	128, 511
HhaI	GCGC	1 cut(s)	34
Hin1II	CATG	3 cut(s)	244, 451, 722
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HinfI	GANTC	3 cut(s)	20, 567, 713
HpaII	CCGG	2 cut(s)	128, 511
HphI	GGTGA	2 cut(s)	164, 466
Hpy166II	GTNNAC	3 cut(s)	162, 457, 571
Hpy188I	TCNGA	3 cut(s)	200, 368, 409
Hpy188III	TCNNGA	4 cut(s)	106, 224, 551, 689
Hpy8I	GTNNAC	3 cut(s)	162, 457, 571
HpyAV	CCTTC	1 cut(s)	306
HpyCH4III	ACNGT	4 cut(s)	64, 125, 170, 364
HpyCH4IV	ACGT	3 cut(s)	100, 218, 663
HpyCH4V	TGCA	5 cut(s)	307, 360, 447, 483, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 444
HpyF3I	CTNAG	3 cut(s)	197, 531, 574
HpySE526I	ACGT	3 cut(s)	100, 218, 663
Hsp92II	CATG	3 cut(s)	244, 451, 722
HspAI	GCGC	1 cut(s)	32
Kzo9I	GATC	1 cut(s)	588
LmnI	GCTCC	1 cut(s)	95
Lsp1109I	GCAGC	1 cut(s)	291
LweI	GCATC	1 cut(s)	330
MaeII	ACGT	3 cut(s)	100, 218, 663
MaeIII	GTNAC	3 cut(s)	170, 471, 506
MalI	GATC	1 cut(s)	590
MboI	GATC	1 cut(s)	588
MflI	RGATCY	1 cut(s)	588
MhlI	GDGCHC	3 cut(s)	100, 187, 542
MluCI	AATT	4 cut(s)	201, 275, 411, 441
MlyI	GAGTC	2 cut(s)	14, 576
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	8 cut(s)	311, 328, 346, 376, 445, 569, 631, 687
MseI	TTAA	2 cut(s)	27, 632
MslI	CAYNNNNRTG	1 cut(s)	452
MspI	CCGG	2 cut(s)	128, 511
MspR9I	CCNGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	2 cut(s)	38, 444
NciI	CCSGG	1 cut(s)	512
NdeII	GATC	1 cut(s)	588
NlaIII	CATG	3 cut(s)	244, 451, 722
NlaIV	GGNNCC	2 cut(s)	184, 185
NmuCI	GTSAC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	713
PkrI	GCNGC	2 cut(s)	133, 306
PleI	GAGTC	2 cut(s)	14, 575
PpsI	GAGTC	2 cut(s)	14, 575
PspFI	CCCAGC	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	184, 185
PspOMI	GGGCCC	1 cut(s)	183
PspPI	GGNCC	3 cut(s)	183, 184, 640
PstI	CTGCAG	1 cut(s)	485
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	588
RsaI	GTAC	1 cut(s)	662
RsaNI	GTAC	1 cut(s)	661
RseI	CAYNNNNRTG	1 cut(s)	452
SaqAI	TTAA	2 cut(s)	27, 632
SatI	GCNGC	2 cut(s)	132, 305
Sau3AI	GATC	1 cut(s)	588
Sau96I	GGNCC	3 cut(s)	183, 184, 640
SchI	GAGTC	2 cut(s)	14, 576
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	3 cut(s)	100, 187, 542
SetI	ASST	8 cut(s)	103, 177, 221, 357, 456, 478, 585, 666
SfaNI	GCATC	1 cut(s)	330
SfcI	CTRYAG	1 cut(s)	481
SinI	GGWCC	1 cut(s)	640
SmiMI	CAYNNNNRTG	1 cut(s)	452
Sse9I	AATT	4 cut(s)	201, 275, 411, 441
SsiI	CCGC	4 cut(s)	131, 438, 526, 643
SspI	AATATT	1 cut(s)	630
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	2 cut(s)	80, 187
TaaI	ACNGT	4 cut(s)	64, 125, 170, 364
TaiI	ACGT	3 cut(s)	103, 221, 666
TaqI	TCGA	1 cut(s)	420
TasI	AATT	4 cut(s)	201, 275, 411, 441
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	713
Tru1I	TTAA	2 cut(s)	27, 632
Tru9I	TTAA	2 cut(s)	27, 632
TscAI	CASTG	3 cut(s)	164, 367, 601
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	267
TspRI	CASTG	3 cut(s)	164, 367, 601
VpaK11BI	GGWCC	1 cut(s)	640
XapI	RAATTY	3 cut(s)	201, 275, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.