Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016136

Physical Location & Seq

Genomic Coordinates Forward (+)

17481996 .. 17483158

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G47440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGAAGAATGATTCCAACATCGTTTTCAAGTAAGTTTCAAGGAGTACTAAGTATGAATGCGTTGAGATGTTATGTATCAGAGTTTATCTCAACCTTCTTCTTCGTCCTCGCAGCCGTTGGTTCTGTCATGTCTTCAAGGAAATTGATGGCTGGTGATGTGTCTGGTCCGTTTGGTGTTTTAATACCGGCGATTGCTAATGCGTTGGCGTTATCATCGTCAGTTTACATCTCTTGGAACGTCTCTGGTGGTCATGTGAATCCAGCGGTTACGTTTGCGATGGCTGTTGCTGGTCGGATTAGCGTTCCAACCGCTATGTTTTATTGGACTTCTCAGATGATTGCCTCTGTTATGGCTTGCCTTGTTCTTAAAGTAACCGTCATGGAACAGCACGTACCGATTTATAAGATTGCTGGAGAAATGACTGGATTTGGAGCATCTGTTCTTGAAGGTGTTTTAGCTTTCGTCTTGGTTTATACTGTGTTCACGGCTAGCGATCCCAGACGTGGGCTACCTTTAGCAGTGGGACCTATATTTATAGGGTTTGTTGCGGGAGCCAATGTTCTAGCCGCTGGTCCATTCTCTGGAGGTTCAATGAATCCTGCGTGTGCCTTTGGGTCGGCGATGGTTTACGGAAGCTTTAAGAACCAAGCTGTGTATTGGGTTGGGCCTCTGCTTGGAGGAGCCACAGCTGCTTTAGTGTATGATAACGTGGTGGTCCCTGTAGAAGATGATCGTGGTTCATCTACTGGTGATGCCATTGGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009705 GO:0009987 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0019953 GO:0022412 GO:0022414 GO:0022803 GO:0022838 GO:0022857 GO:0030154 GO:0031090 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0042887 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0090406 GO:0098588 GO:0098805 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

256

Amino Acids

26.64

Weight (kDa)

8.46

Isoelectric Point (pI)

30.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	18 - 235	3.4e-52	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47440
fragaria_vesca	FvH4_7g27390
malus_domestica	MD01G1182400.v1.1 MD07G1253000.v1.1
prunus_persica	Prupe.2G276600_v2.0.a1
pyrus_communis	pycom01g19240
rosa_chinensis	RchiOBHm_Chr1g0374221
rosa_laevigata	RLG00000026754
rosa_roxburghii	Rroxscaffold_4G00283630
rosa_rugosa	Rorug01G0381600
rosa_samantha	Rh1AG392500 Rh1BG356500 Rh1CG369500 Rh1DG387000
rosa_wichuraiana	Rw1G034320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	405
AccB7I	CCANNNNNTGG	1 cut(s)	584
AciI	CCGC	4 cut(s)	266, 312, 551, 570
AclWI	GGATC	1 cut(s)	491
AfaI	GTAC	2 cut(s)	48, 396
AfiI	CCNNNNNNNGG	4 cut(s)	506, 507, 584, 677
AgsI	TTSAA	5 cut(s)	30, 41, 138, 449, 594
AjiI	CACGTC	1 cut(s)	506
AjuI	GAANNNNNNNTTGG	2 cut(s)	10, 42
AloI	GAACNNNNNNTCC	4 cut(s)	426, 458, 546, 578
AluBI	AGCT	4 cut(s)	461, 639, 653, 692
AluI	AGCT	4 cut(s)	461, 639, 653, 692
Alw26I	GTCTC	1 cut(s)	247
AlwI	GGATC	1 cut(s)	491
AoxI	GGCC	1 cut(s)	668
ApeKI	GCWGC	2 cut(s)	113, 692
AspS9I	GGNCC	5 cut(s)	167, 527, 575, 668, 718
AsuHPI	GGTGA	2 cut(s)	167, 764
AsuNHI	GCTAGC	1 cut(s)	491
AvaII	GGWCC	4 cut(s)	167, 527, 575, 718
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	125, 679
BccI	CCATC	3 cut(s)	142, 274, 619
BceAI	ACGGC	2 cut(s)	101, 504
BcoDI	GTCTC	1 cut(s)	247
BfaI	CTAG	2 cut(s)	492, 566
BfmI	CTRYAG	1 cut(s)	723
BisI	GCNGC	3 cut(s)	114, 570, 693
BlsI	GCNGC	3 cut(s)	115, 571, 694
BmcAI	AGTACT	1 cut(s)	48
Bme18I	GGWCC	4 cut(s)	167, 527, 575, 718
BmgBI	CACGTC	1 cut(s)	506
BmgT120I	GGNCC	5 cut(s)	167, 527, 575, 668, 718
BmiI	GGNNCC	4 cut(s)	528, 556, 685, 720
BmsI	GCATC	2 cut(s)	446, 745
BmtI	GCTAGC	1 cut(s)	495
BpiI	GAAGAC	1 cut(s)	126
BplI	GAGNNNNNCTC	2 cut(s)	74, 106
BpmI	CTGGAG	2 cut(s)	435, 606
BsaAI	YACGTR	1 cut(s)	394
BsaXI	ACNNNNNCTCC	4 cut(s)	426, 456, 546, 576
Bsc4I	CCNNNNNNNGG	4 cut(s)	506, 507, 584, 677
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	2 cut(s)	430, 754
BseLI	CCNNNNNNNGG	4 cut(s)	506, 507, 584, 677
BseMII	CTCAG	1 cut(s)	347
BseNI	ACTGG	2 cut(s)	430, 754
BseRI	GAGGAG	1 cut(s)	696
BseXI	GCAGC	2 cut(s)	125, 679
BshFI	GGCC	1 cut(s)	670
BsiSI	CCGG	1 cut(s)	188
BslFI	GGGAC	2 cut(s)	540, 704
BslI	CCNNNNNNNGG	4 cut(s)	506, 507, 584, 677
BsmAI	GTCTC	1 cut(s)	247
BsmBI	CGTCTC	1 cut(s)	247
BsmFI	GGGAC	2 cut(s)	540, 704
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	670
Bsp143I	GATC	2 cut(s)	496, 733
BspACI	CCGC	4 cut(s)	266, 312, 551, 570
BspANI	GGCC	1 cut(s)	670
BspCNI	CTCAG	1 cut(s)	346
BspLI	GGNNCC	4 cut(s)	528, 556, 685, 720
BspOI	GCTAGC	1 cut(s)	495
BspPI	GGATC	1 cut(s)	491
BsrFI	RCCGGY	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	430, 754
BssAI	RCCGGY	1 cut(s)	187
BssMI	GATC	2 cut(s)	496, 733
Bst4CI	ACNGT	2 cut(s)	379, 481
BstBAI	YACGTR	1 cut(s)	394
BstC8I	GCNNGC	2 cut(s)	358, 493
BstDEI	CTNAG	2 cut(s)	50, 333
BstKTI	GATC	2 cut(s)	499, 736
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	2 cut(s)	496, 733
BstMWI	GCNNNNNNNGC	1 cut(s)	692
BstSFI	CTRYAG	1 cut(s)	723
BstV1I	GCAGC	2 cut(s)	125, 679
BstV2I	GAAGAC	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	670
BtgZI	GCGATG	2 cut(s)	293, 638
BtrI	CACGTC	1 cut(s)	506
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	1 cut(s)	528
Cac8I	GCNNGC	2 cut(s)	358, 493
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	5 cut(s)	167, 527, 575, 668, 718
Csp6I	GTAC	2 cut(s)	47, 395
CviAII	CATG	3 cut(s)	130, 254, 382
CviQI	GTAC	2 cut(s)	47, 395
DdeI	CTNAG	2 cut(s)	50, 333
DpnI	GATC	2 cut(s)	498, 735
DpnII	GATC	2 cut(s)	496, 733
Eco47I	GGWCC	4 cut(s)	167, 527, 575, 718
EcoO109I	RGGNCCY	1 cut(s)	527
Esp3I	CGTCTC	1 cut(s)	247
FaeI	CATG	3 cut(s)	133, 257, 385
FaqI	GGGAC	2 cut(s)	540, 704
FatI	CATG	3 cut(s)	129, 253, 381
FauI	CCCGC	1 cut(s)	544
Fnu4HI	GCNGC	3 cut(s)	114, 570, 693
Fsp4HI	GCNGC	3 cut(s)	114, 570, 693
FspBI	CTAG	2 cut(s)	492, 566
GluI	GCNGC	3 cut(s)	114, 570, 693
GsuI	CTGGAG	2 cut(s)	435, 606
HaeIII	GGCC	1 cut(s)	670
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	3 cut(s)	133, 257, 385
HindIII	AAGCTT	1 cut(s)	637
HinfI	GANTC	3 cut(s)	13, 259, 598
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	2 cut(s)	167, 764
Hpy166II	GTNNAC	3 cut(s)	226, 486, 631
Hpy188I	TCNGA	3 cut(s)	82, 297, 336
Hpy188III	TCNNGA	2 cut(s)	446, 585
Hpy8I	GTNNAC	3 cut(s)	226, 486, 631
HpyAV	CCTTC	2 cut(s)	106, 443
HpyCH4III	ACNGT	2 cut(s)	379, 481
HpyCH4IV	ACGT	5 cut(s)	240, 272, 393, 505, 711
HpyF10VI	GCNNNNNNNGC	1 cut(s)	692
HpyF3I	CTNAG	2 cut(s)	50, 333
HpySE526I	ACGT	5 cut(s)	240, 272, 393, 505, 711
Hsp92II	CATG	3 cut(s)	133, 257, 385
Kzo9I	GATC	2 cut(s)	496, 733
LmnI	GCTCC	3 cut(s)	434, 554, 683
Lsp1109I	GCAGC	2 cut(s)	125, 679
LweI	GCATC	2 cut(s)	446, 745
MaeI	CTAG	2 cut(s)	492, 566
MaeII	ACGT	5 cut(s)	240, 272, 393, 505, 711
MaeIII	GTNAC	2 cut(s)	268, 373
MalI	GATC	2 cut(s)	498, 735
MboI	GATC	2 cut(s)	496, 733
MboII	GAAGA	5 cut(s)	18, 91, 94, 126, 740
MluCI	AATT	1 cut(s)	143
MmeI	TCCRAC	3 cut(s)	41, 275, 332
MnlI	CCTC	5 cut(s)	119, 355, 581, 674, 681
MseI	TTAA	3 cut(s)	182, 369, 642
MslI	CAYNNNNRTG	1 cut(s)	764
MspA1I	CMGCKG	3 cut(s)	266, 572, 692
MspI	CCGG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	692
NdeII	GATC	2 cut(s)	496, 733
NheI	GCTAGC	1 cut(s)	491
NlaIII	CATG	3 cut(s)	133, 257, 385
NlaIV	GGNNCC	4 cut(s)	528, 556, 685, 720
PctI	GAATGC	1 cut(s)	64
PfeI	GAWTC	3 cut(s)	13, 259, 598
PflMI	CCANNNNNTGG	1 cut(s)	584
PkrI	GCNGC	3 cut(s)	115, 571, 694
Ppu21I	YACGTR	1 cut(s)	394
PpuMI	RGGWCCY	1 cut(s)	527
PsiI	TTATAA	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	527
PspN4I	GGNNCC	4 cut(s)	528, 556, 685, 720
PspPI	GGNCC	5 cut(s)	167, 527, 575, 668, 718
PspPPI	RGGWCCY	1 cut(s)	527
PsrI	GAACNNNNNNTAC	2 cut(s)	378, 410
PvuII	CAGCTG	1 cut(s)	692
RsaI	GTAC	2 cut(s)	48, 396
RsaNI	GTAC	2 cut(s)	47, 395
RseI	CAYNNNNRTG	1 cut(s)	764
SaqAI	TTAA	3 cut(s)	182, 369, 642
SatI	GCNGC	3 cut(s)	114, 570, 693
Sau3AI	GATC	2 cut(s)	496, 733
Sau96I	GGNCC	5 cut(s)	167, 527, 575, 668, 718
ScaI	AGTACT	1 cut(s)	48
SfaNI	GCATC	2 cut(s)	446, 745
SfcI	CTRYAG	1 cut(s)	723
SinI	GGWCC	4 cut(s)	167, 527, 575, 718
SmiMI	CAYNNNNRTG	1 cut(s)	764
Sse9I	AATT	1 cut(s)	143
SsiI	CCGC	4 cut(s)	266, 312, 551, 570
SspMI	CTAG	2 cut(s)	492, 566
TaaI	ACNGT	2 cut(s)	379, 481
TaiI	ACGT	5 cut(s)	243, 275, 396, 508, 714
TasI	AATT	1 cut(s)	143
TatI	WGTACW	1 cut(s)	46
TauI	GCSGC	1 cut(s)	572
TfiI	GAWTC	3 cut(s)	13, 259, 598
Tru1I	TTAA	3 cut(s)	182, 369, 642
Tru9I	TTAA	3 cut(s)	182, 369, 642
TscAI	CASTG	1 cut(s)	528
TseI	GCWGC	2 cut(s)	113, 692
TspDTI	ATGAA	3 cut(s)	71, 611, 732
TspGWI	ACGGA	2 cut(s)	159, 648
TspRI	CASTG	1 cut(s)	528
Van91I	CCANNNNNTGG	1 cut(s)	584
VpaK11BI	GGWCC	4 cut(s)	167, 527, 575, 718
XspI	CTAG	2 cut(s)	492, 566
ZrmI	AGTACT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.