Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0016136

Physical Location & Seq

Genomic Coordinates Reverse (-)

20496080 .. 20497676

Gene Structure 1597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g27390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTAGGATTGCGCTGACCGCTCGATTCCAACAAGTAATTACTCCCAATGCTCTCCGATCTTATCTTGCAGAGTTCATCTCTACCTTCTTCTTCGTCTTCGCCGTCATCGGTTCTCTGATGTCCTCCAGAAAGTTGATGCCAGATGCTGCATCAGACCCAGCAAGTCTGGTGTTGGTTGCCATGACCAATGCCTTTGCACTGGCCTCCGCCGTGTACATCTCGGCATCCACCTCCGGCGGCCATGTAAATCCGGCCGTCACCTTTGCCATGGCTGTCGGAGGTCACATTAGTGTCCCCATTGCCCTCATATACTGGATTTGCCAAATGGTGGCTGCTGTCATGGCTTGCCTTCTCTTGAGAGTCACTGTTGTAGGACAGCATGTTCCAACATATGCAATTACAGAAGAAATGACAGGATTTGGAGCCTCAGTTTTGGAGGGTGTCCTAACATTTGCCCTGGTCTACACTGTTTATGCTGCTGGTGATCCTAGACATGGTGCATTGAGGGCTATGGGGCCATTAGCAATTGGACTCATGGCAGGGGCAAACGTTCTGGCCACCGGGCCATTCTCCGGCGGATCCATGAACCCGGCTTGTGCATTTGGATCTGCAGTCATTACTGGTACCTTCAAGAACCAAGCGGTGTATTGGGTCGGACCCTTGATCGGTGCTGCAGTTGCTGGCCTTCTATATGATAATGTTGTGTACCCTGTTCAAGATTCTCTTACTAGGAACAATGCAGATGGCATTGCAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009705 GO:0009987 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0019953 GO:0022412 GO:0022414 GO:0022803 GO:0022838 GO:0022857 GO:0030154 GO:0031090 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0042887 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0090406 GO:0098588 GO:0098805 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

254

Amino Acids

26.2

Weight (kDa)

6.89

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	15 - 232	1.1e-56	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47440
fragaria_vesca	FvH4_7g27390
malus_domestica	MD01G1182400.v1.1 MD07G1253000.v1.1
prunus_persica	Prupe.2G276600_v2.0.a1
pyrus_communis	pycom01g19240
rosa_chinensis	RchiOBHm_Chr1g0374221
rosa_laevigata	RLG00000026754
rosa_roxburghii	Rroxscaffold_4G00283630
rosa_rugosa	Rorug01G0381600
rosa_samantha	Rh1AG392500 Rh1BG356500 Rh1CG369500 Rh1DG387000
rosa_wichuraiana	Rw1G034320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	626
AccB1I	GGYRCC	1 cut(s)	626
AccB7I	CCANNNNNTGG	1 cut(s)	331
AccBSI	CCGCTC	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	465
AciI	CCGC	5 cut(s)	21, 210, 240, 579, 644
AclI	AACGTT	1 cut(s)	552
AclWI	GGATC	4 cut(s)	482, 576, 589, 616
AcoI	YGGCCR	3 cut(s)	241, 255, 558
AfaI	GTAC	3 cut(s)	218, 628, 710
AfiI	CCNNNNNNNGG	4 cut(s)	331, 497, 575, 668
AgsI	TTSAA	2 cut(s)	634, 719
AjnI	CCWGG	1 cut(s)	459
AleI	CACNNNNGTG	1 cut(s)	291
AloI	GAACNNNNNNTCC	2 cut(s)	369, 401
AlwI	GGATC	4 cut(s)	482, 576, 589, 616
AlwNI	CAGNNNCTG	2 cut(s)	149, 683
AoxI	GGCC	7 cut(s)	204, 241, 255, 518, 558, 566, 685
ApeKI	GCWGC	4 cut(s)	149, 335, 479, 674
Asp718I	GGTACC	1 cut(s)	626
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	3 cut(s)	518, 566, 659
AsuC2I	CCSGG	2 cut(s)	565, 593
AsuHPI	GGTGA	2 cut(s)	253, 497
AvaII	GGWCC	1 cut(s)	659
BalI	TGGCCA	1 cut(s)	560
BamHI	GGATCC	1 cut(s)	581
BanI	GGYRCC	1 cut(s)	626
BbsI	GAAGAC	1 cut(s)	91
BbvI	GCAGC	4 cut(s)	136, 322, 466, 661
BccI	CCATC	1 cut(s)	740
BceAI	ACGGC	3 cut(s)	89, 197, 242
BciT130I	CCWGG	1 cut(s)	461
BcnI	CCSGG	2 cut(s)	565, 593
BfaI	CTAG	3 cut(s)	6, 492, 732
BfmI	CTRYAG	2 cut(s)	612, 675
BisI	GCNGC	5 cut(s)	150, 241, 336, 480, 675
BlsI	GCNGC	5 cut(s)	151, 242, 337, 481, 676
Bme1390I	CCNGG	3 cut(s)	461, 565, 593
Bme18I	GGWCC	1 cut(s)	659
BmgT120I	GGNCC	3 cut(s)	518, 566, 659
BmiI	GGNNCC	5 cut(s)	427, 519, 583, 628, 661
BmrFI	CCNGG	3 cut(s)	461, 565, 593
BmsI	GCATC	4 cut(s)	129, 136, 161, 236
BpiI	GAAGAC	1 cut(s)	91
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	379
BpuMI	CCSGG	2 cut(s)	565, 593
BsaJI	CCNNGG	2 cut(s)	270, 459
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	4 cut(s)	331, 497, 575, 668
Bse1I	ACTGG	3 cut(s)	207, 320, 628
Bse3DI	GCAATG	2 cut(s)	300, 750
BseBI	CCWGG	1 cut(s)	461
BseDI	CCNNGG	2 cut(s)	270, 459
BseGI	GGATG	1 cut(s)	227
BseLI	CCNNNNNNNGG	4 cut(s)	331, 497, 575, 668
BseMI	GCAATG	2 cut(s)	300, 750
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	3 cut(s)	207, 320, 628
BseX3I	CGGCCG	1 cut(s)	255
BseXI	GCAGC	4 cut(s)	136, 322, 466, 661
BseYI	CCCAGC	1 cut(s)	160
Bsh1285I	CGRYCG	1 cut(s)	258
BshFI	GGCC	7 cut(s)	206, 243, 257, 520, 560, 568, 687
BshNI	GGYRCC	1 cut(s)	626
BsiEI	CGRYCG	1 cut(s)	258
BsiSI	CCGG	5 cut(s)	237, 254, 564, 576, 593
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	4 cut(s)	331, 497, 575, 668
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	7 cut(s)	206, 243, 257, 520, 560, 568, 687
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	5 cut(s)	59, 487, 581, 608, 666
Bsp19I	CCATGG	1 cut(s)	270
BspACI	CCGC	5 cut(s)	21, 210, 240, 579, 644
BspANI	GGCC	7 cut(s)	206, 243, 257, 520, 560, 568, 687
BspCNI	CTCAG	1 cut(s)	443
BspLI	GGNNCC	5 cut(s)	427, 519, 583, 628, 661
BspMAI	CTGCAG	2 cut(s)	616, 679
BspPI	GGATC	4 cut(s)	482, 576, 589, 616
BspT107I	GGYRCC	1 cut(s)	626
BsrBI	CCGCTC	1 cut(s)	23
BsrDI	GCAATG	2 cut(s)	300, 750
BsrGI	TGTACA	1 cut(s)	216
BsrI	ACTGG	3 cut(s)	207, 320, 628
BssECI	CCNNGG	2 cut(s)	270, 459
BssMI	GATC	5 cut(s)	59, 487, 581, 608, 666
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	461
Bst4CI	ACNGT	2 cut(s)	370, 472
BstAUI	TGTACA	1 cut(s)	216
BstC8I	GCNNGC	2 cut(s)	349, 685
BstDEI	CTNAG	1 cut(s)	430
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	5 cut(s)	62, 490, 584, 611, 669
BstMBI	GATC	5 cut(s)	59, 487, 581, 608, 666
BstMCI	CGRYCG	1 cut(s)	258
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 344, 509, 680
BstNI	CCWGG	1 cut(s)	461
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	3 cut(s)	459, 563, 591
BstSFI	CTRYAG	2 cut(s)	612, 675
BstV1I	GCAGC	4 cut(s)	136, 322, 466, 661
BstV2I	GAAGAC	1 cut(s)	91
BstX2I	RGATCY	2 cut(s)	581, 608
BstYI	RGATCY	2 cut(s)	581, 608
BstZI	CGGCCG	1 cut(s)	255
BsuRI	GGCC	7 cut(s)	206, 243, 257, 520, 560, 568, 687
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	227
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	4 cut(s)	200, 366, 468, 762
Cac8I	GCNNGC	2 cut(s)	349, 685
CaiI	CAGNNNCTG	2 cut(s)	149, 683
CfoI	GCGC	1 cut(s)	16
Cfr13I	GGNCC	3 cut(s)	518, 566, 659
Csp6I	GTAC	3 cut(s)	217, 627, 709
CviAII	CATG	8 cut(s)	184, 245, 271, 343, 383, 497, 538, 586
CviQI	GTAC	3 cut(s)	217, 627, 709
DdeI	CTNAG	1 cut(s)	430
DpnI	GATC	5 cut(s)	61, 489, 583, 610, 668
DpnII	GATC	5 cut(s)	59, 487, 581, 608, 666
EaeI	YGGCCR	3 cut(s)	241, 255, 558
EagI	CGGCCG	1 cut(s)	255
EciI	GGCGGA	2 cut(s)	199, 594
EclXI	CGGCCG	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	659
Eco52I	CGGCCG	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	8 cut(s)	187, 248, 274, 346, 386, 500, 541, 589
FalI	AAGNNNNNCTT	2 cut(s)	711, 743
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	8 cut(s)	183, 244, 270, 342, 382, 496, 537, 585
FauNDI	CATATG	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	465
Fnu4HI	GCNGC	5 cut(s)	150, 241, 336, 480, 675
FokI	GGATG	1 cut(s)	214
Fsp4HI	GCNGC	5 cut(s)	150, 241, 336, 480, 675
FspBI	CTAG	3 cut(s)	6, 492, 732
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	5 cut(s)	150, 241, 336, 480, 675
GsaI	CCCAGC	1 cut(s)	164
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	7 cut(s)	206, 243, 257, 520, 560, 568, 687
HapII	CCGG	5 cut(s)	237, 254, 564, 576, 593
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	8 cut(s)	187, 248, 274, 346, 386, 500, 541, 589
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HinfI	GANTC	4 cut(s)	27, 363, 534, 722
HpaII	CCGG	5 cut(s)	237, 254, 564, 576, 593
HphI	GGTGA	2 cut(s)	253, 497
Hpy166II	GTNNAC	3 cut(s)	217, 466, 709
Hpy188I	TCNGA	5 cut(s)	59, 120, 157, 281, 659
Hpy188III	TCNNGA	4 cut(s)	129, 358, 634, 719
Hpy8I	GTNNAC	3 cut(s)	217, 466, 709
HpyAV	CCTTC	4 cut(s)	97, 362, 640, 698
HpyCH4III	ACNGT	2 cut(s)	370, 472
HpyCH4IV	ACGT	1 cut(s)	552
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 344, 509, 680
HpyF3I	CTNAG	1 cut(s)	430
HpySE526I	ACGT	1 cut(s)	552
Hsp92II	CATG	8 cut(s)	187, 248, 274, 346, 386, 500, 541, 589
HspAI	GCGC	1 cut(s)	14
KpnI	GGTACC	1 cut(s)	630
Kzo9I	GATC	5 cut(s)	59, 487, 581, 608, 666
LmnI	GCTCC	1 cut(s)	425
Lsp1109I	GCAGC	4 cut(s)	136, 322, 466, 661
LweI	GCATC	4 cut(s)	129, 136, 161, 236
MaeI	CTAG	3 cut(s)	6, 492, 732
MaeII	ACGT	1 cut(s)	552
MaeIII	GTNAC	3 cut(s)	259, 284, 364
MalI	GATC	5 cut(s)	61, 489, 583, 610, 668
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	5 cut(s)	59, 487, 581, 608, 666
MboII	GAAGA	4 cut(s)	82, 85, 91, 419
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	2 cut(s)	581, 608
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	3 cut(s)	39, 399, 528
MluNI	TGGCCA	1 cut(s)	560
MlyI	GAGTC	2 cut(s)	372, 528
MmeI	TCCRAC	4 cut(s)	55, 259, 413, 637
MnlI	CCTC	8 cut(s)	136, 217, 244, 275, 317, 433, 439, 501
Mox20I	TGGCCA	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	560
MslI	CAYNNNNRTG	2 cut(s)	291, 755
Msp20I	TGGCCA	1 cut(s)	560
MspI	CCGG	5 cut(s)	237, 254, 564, 576, 593
MspR9I	CCNGG	3 cut(s)	461, 565, 593
MunI	CAATTG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	461
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 344, 509, 680
NciI	CCSGG	2 cut(s)	565, 593
NcoI	CCATGG	1 cut(s)	270
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	5 cut(s)	59, 487, 581, 608, 666
NlaIII	CATG	8 cut(s)	187, 248, 274, 346, 386, 500, 541, 589
NlaIV	GGNNCC	5 cut(s)	427, 519, 583, 628, 661
NmeAIII	GCCGAG	1 cut(s)	203
NmuCI	GTSAC	3 cut(s)	259, 284, 364
NspI	RCATGY	1 cut(s)	386
OliI	CACNNNNGTG	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	27, 722
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	5 cut(s)	151, 242, 337, 481, 676
PleI	GAGTC	2 cut(s)	371, 528
PpsI	GAGTC	2 cut(s)	371, 528
Psp1406I	AACGTT	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	459
PspFI	CCCAGC	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	459
PspN4I	GGNNCC	5 cut(s)	427, 519, 583, 628, 661
PspPI	GGNCC	3 cut(s)	518, 566, 659
PstI	CTGCAG	2 cut(s)	616, 679
PstNI	CAGNNNCTG	2 cut(s)	149, 683
PsuI	RGATCY	2 cut(s)	581, 608
RsaI	GTAC	3 cut(s)	218, 628, 710
RsaNI	GTAC	3 cut(s)	217, 627, 709
RseI	CAYNNNNRTG	2 cut(s)	291, 755
SatI	GCNGC	5 cut(s)	150, 241, 336, 480, 675
Sau3AI	GATC	5 cut(s)	59, 487, 581, 608, 666
Sau96I	GGNCC	3 cut(s)	518, 566, 659
SchI	GAGTC	2 cut(s)	372, 528
ScrFI	CCNGG	3 cut(s)	461, 565, 593
SetI	ASST	6 cut(s)	89, 236, 266, 286, 555, 632
SfaNI	GCATC	4 cut(s)	129, 136, 161, 236
SfcI	CTRYAG	2 cut(s)	612, 675
SinI	GGWCC	1 cut(s)	659
SmiMI	CAYNNNNRTG	2 cut(s)	291, 755
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	3 cut(s)	39, 399, 528
SsiI	CCGC	5 cut(s)	21, 210, 240, 579, 644
SspMI	CTAG	3 cut(s)	6, 492, 732
StyD4I	CCNGG	3 cut(s)	459, 563, 591
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	2 cut(s)	370, 472
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	1 cut(s)	25
TasI	AATT	3 cut(s)	39, 399, 528
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	2 cut(s)	27, 722
TscAI	CASTG	4 cut(s)	207, 373, 475, 762
TseFI	GTSAC	3 cut(s)	259, 284, 364
TseI	GCWGC	4 cut(s)	149, 335, 479, 674
Tsp45I	GTSAC	3 cut(s)	259, 284, 364
TspDTI	ATGAA	2 cut(s)	67, 602
TspRI	CASTG	4 cut(s)	207, 373, 475, 762
Van91I	CCANNNNNTGG	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	659
XceI	RCATGY	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	465
XspI	CTAG	3 cut(s)	6, 492, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.