Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016136

Physical Location & Seq

Genomic Coordinates Reverse (-)

27799513 .. 27800667

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G276600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCTAGGATTGCACTAACCACTCGATTTCGGCAAGCAATTACTCCCAATGCTCTTCGATCTTATCTTGCAGAGTTCATCTCAACTTTCTTCTTTGTGTTTGCTGTTGTGGGCTCTATGATGTCCTCCAGAAAGTTGATGCCAGATGCTGCATCAGACCCAGCTAGTCTGGTGGTGGTTGCCATCGCCAACGCCTTTGCGTTGGCCTCGGCCGTGTACATCGCAGCCAATGCCTCCGGCGGCCATGTGAACCCTGCTGTCACCTTCGGCATGGCCGTGGGAGGACACATTAGTGTCCCCAATGCCATCTGCTATTGGATTTCTCAGATGGTGGCCTCTGTCATGGCTTGCCTTCTCTTGAAAGTAACTGTTGTTGGGCAGCATGTTCCAGCATATGCAATTACAGAAGAAATTACAGGTTTTGGGGCATCAGTTTTGGAAGGTGTGCTTACATTTGGGTTGGTGTACACGGTTTATGCTGCTGGTGATCCTAGAAATGGTGCGGTTGGGGGCATTGGGCCCTTGGCAATTGGGTTGATGGCAGGGGCCAATGTCCTGGCAACTGGGCCGTTTTCTGGTGGATCAATGAACCCGGCTTGTGCATTTGGGTCTGCAGTCGTTGCCGGTAGCTTCAAGAACCAAGCTGTGTACTGGGTAGGACCTTTGATTGGTGCTGCAGTTGCTGGACTTCTATATGACAATGTGGTGTTCCCTACCCAAGTTCCAGATTCTCTTACAGGAGTTACAGAGGGAGTTGGGGTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009705 GO:0009987 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0019953 GO:0022412 GO:0022414 GO:0022803 GO:0022838 GO:0022857 GO:0030154 GO:0031090 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0042887 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0090406 GO:0098588 GO:0098805 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

256

Amino Acids

25.93

Weight (kDa)

6.25

Isoelectric Point (pI)

31.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47440
fragaria_vesca	FvH4_7g27390
malus_domestica	MD01G1182400.v1.1 MD07G1253000.v1.1
prunus_persica	Prupe.2G276600_v2.0.a1
pyrus_communis	pycom01g19240
rosa_chinensis	RchiOBHm_Chr1g0374221
rosa_laevigata	RLG00000026754
rosa_roxburghii	Rroxscaffold_4G00283630
rosa_rugosa	Rorug01G0381600
rosa_samantha	Rh1AG392500 Rh1BG356500 Rh1CG369500 Rh1DG387000
rosa_wichuraiana	Rw1G034320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	240, 503
AclWI	GGATC	2 cut(s)	482, 589
AcoI	YGGCCR	3 cut(s)	210, 241, 273
AfaI	GTAC	3 cut(s)	218, 467, 650
AfiI	CCNNNNNNNGG	3 cut(s)	497, 575, 668
AgsI	TTSAA	2 cut(s)	361, 634
AjnI	CCWGG	1 cut(s)	555
AleI	CACNNNNGTG	1 cut(s)	291
AluBI	AGCT	3 cut(s)	164, 630, 644
AluI	AGCT	3 cut(s)	164, 630, 644
AlwI	GGATC	2 cut(s)	482, 589
AlwNI	CAGNNNCTG	2 cut(s)	149, 683
AoxI	GGCC	8 cut(s)	204, 210, 241, 273, 333, 518, 546, 566
ApaI	GGGCCC	1 cut(s)	522
ApeKI	GCWGC	5 cut(s)	149, 224, 379, 479, 674
AspS9I	GGNCC	5 cut(s)	518, 519, 546, 566, 659
AsuC2I	CCSGG	1 cut(s)	593
AsuHPI	GGTGA	2 cut(s)	253, 497
AvaII	GGWCC	1 cut(s)	659
BaeGI	GKGCMC	1 cut(s)	522
BanII	GRGCYC	2 cut(s)	116, 522
BbsI	GAAGAC	1 cut(s)	754
BbvI	GCAGC	5 cut(s)	136, 236, 391, 466, 661
BccI	CCATC	4 cut(s)	191, 314, 322, 532
BceAI	ACGGC	3 cut(s)	197, 260, 553
BciT130I	CCWGG	1 cut(s)	557
BcnI	CCSGG	1 cut(s)	593
BfaI	CTAG	3 cut(s)	6, 165, 492
BfmI	CTRYAG	2 cut(s)	612, 675
BisI	GCNGC	6 cut(s)	150, 225, 241, 380, 480, 675
BlsI	GCNGC	6 cut(s)	151, 226, 242, 381, 481, 676
Bme1390I	CCNGG	2 cut(s)	557, 593
Bme18I	GGWCC	1 cut(s)	659
BmgT120I	GGNCC	5 cut(s)	518, 519, 546, 566, 659
BmiI	GGNNCC	2 cut(s)	520, 547
BmrFI	CCNGG	2 cut(s)	557, 593
BmrI	ACTGGG	2 cut(s)	573, 661
BmsI	GCATC	4 cut(s)	129, 136, 161, 437
BmuI	ACTGGG	2 cut(s)	573, 661
BpiI	GAAGAC	1 cut(s)	754
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	1 cut(s)	112
BpuMI	CCSGG	1 cut(s)	593
BsaJI	CCNNGG	3 cut(s)	207, 276, 522
BsaXI	ACNNNNNCTCC	1 cut(s)	744
Bsc4I	CCNNNNNNNGG	3 cut(s)	497, 575, 668
Bse118I	RCCGGY	1 cut(s)	623
Bse1I	ACTGG	2 cut(s)	568, 656
BseBI	CCWGG	1 cut(s)	557
BseDI	CCNNGG	3 cut(s)	207, 276, 522
BseLI	CCNNNNNNNGG	3 cut(s)	497, 575, 668
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	2 cut(s)	568, 656
BseSI	GKGCMC	1 cut(s)	522
BseX3I	CGGCCG	1 cut(s)	210
BseXI	GCAGC	5 cut(s)	136, 236, 391, 466, 661
BseYI	CCCAGC	1 cut(s)	160
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	8 cut(s)	206, 212, 243, 275, 335, 520, 548, 568
BsiEI	CGRYCG	1 cut(s)	213
BsiSI	CCGG	3 cut(s)	237, 593, 624
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	3 cut(s)	497, 575, 668
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	8 cut(s)	206, 212, 243, 275, 335, 520, 548, 568
Bsp120I	GGGCCC	1 cut(s)	518
Bsp1286I	GDGCHC	2 cut(s)	116, 522
Bsp1407I	TGTACA	2 cut(s)	216, 465
Bsp143I	GATC	3 cut(s)	59, 487, 581
BspACI	CCGC	2 cut(s)	240, 503
BspANI	GGCC	8 cut(s)	206, 212, 243, 275, 335, 520, 548, 568
BspCNI	CTCAG	1 cut(s)	337
BspLI	GGNNCC	2 cut(s)	520, 547
BspMAI	CTGCAG	2 cut(s)	616, 679
BspPI	GGATC	2 cut(s)	482, 589
BspQI	GCTCTTC	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	623
BsrGI	TGTACA	2 cut(s)	216, 465
BsrI	ACTGG	2 cut(s)	568, 656
BssAI	RCCGGY	1 cut(s)	623
BssECI	CCNNGG	3 cut(s)	207, 276, 522
BssMI	GATC	3 cut(s)	59, 487, 581
BssT1I	CCWWGG	1 cut(s)	522
Bst2UI	CCWGG	1 cut(s)	557
Bst4CI	ACNGT	2 cut(s)	370, 472
Bst6I	CTCTTC	1 cut(s)	60
BstAPI	GCANNNNNTGC	2 cut(s)	230, 620
BstAUI	TGTACA	2 cut(s)	216, 465
BstC8I	GCNNGC	2 cut(s)	36, 349
BstDEI	CTNAG	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	276
BstKTI	GATC	3 cut(s)	62, 490, 584
BstMBI	GATC	3 cut(s)	59, 487, 581
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 230, 620, 680
BstNI	CCWGG	1 cut(s)	557
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	2 cut(s)	555, 591
BstSFI	CTRYAG	2 cut(s)	612, 675
BstSLI	GKGCMC	1 cut(s)	522
BstV1I	GCAGC	5 cut(s)	136, 236, 391, 466, 661
BstV2I	GAAGAC	1 cut(s)	754
BstXI	CCANNNNNNTGG	1 cut(s)	556
BstZI	CGGCCG	1 cut(s)	210
BsuRI	GGCC	8 cut(s)	206, 212, 243, 275, 335, 520, 548, 568
BtgI	CCRYGG	1 cut(s)	276
BtgZI	GCGATG	2 cut(s)	169, 205
Cac8I	GCNNGC	2 cut(s)	36, 349
CaiI	CAGNNNCTG	2 cut(s)	149, 683
Cfr10I	RCCGGY	1 cut(s)	623
Cfr13I	GGNCC	5 cut(s)	518, 519, 546, 566, 659
Csp6I	GTAC	3 cut(s)	217, 466, 649
CviAII	CATG	4 cut(s)	245, 271, 343, 383
CviQI	GTAC	3 cut(s)	217, 466, 649
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	3 cut(s)	61, 489, 583
DpnII	GATC	3 cut(s)	59, 487, 581
EaeI	YGGCCR	3 cut(s)	210, 241, 273
EagI	CGGCCG	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
EclXI	CGGCCG	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	522
Eco24I	GRGCYC	2 cut(s)	116, 522
Eco47I	GGWCC	1 cut(s)	659
Eco52I	CGGCCG	1 cut(s)	210
EcoO109I	RGGNCCY	2 cut(s)	519, 659
EcoRII	CCWGG	1 cut(s)	555
EcoT14I	CCWWGG	1 cut(s)	522
EcoT38I	GRGCYC	2 cut(s)	116, 522
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	4 cut(s)	248, 274, 346, 386
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	4 cut(s)	244, 270, 342, 382
FauNDI	CATATG	1 cut(s)	394
Fnu4HI	GCNGC	6 cut(s)	150, 225, 241, 380, 480, 675
FriOI	GRGCYC	2 cut(s)	116, 522
Fsp4HI	GCNGC	6 cut(s)	150, 225, 241, 380, 480, 675
FspBI	CTAG	3 cut(s)	6, 165, 492
GluI	GCNGC	6 cut(s)	150, 225, 241, 380, 480, 675
GsaI	CCCAGC	1 cut(s)	164
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	8 cut(s)	206, 212, 243, 275, 335, 520, 548, 568
HapII	CCGG	3 cut(s)	237, 593, 624
Hin1II	CATG	4 cut(s)	248, 274, 346, 386
HinfI	GANTC	1 cut(s)	728
HpaII	CCGG	3 cut(s)	237, 593, 624
HphI	GGTGA	2 cut(s)	253, 497
Hpy166II	GTNNAC	5 cut(s)	217, 250, 466, 468, 649
Hpy188I	TCNGA	3 cut(s)	157, 327, 767
Hpy188III	TCNNGA	4 cut(s)	129, 358, 634, 725
Hpy8I	GTNNAC	5 cut(s)	217, 250, 466, 468, 649
HpyAV	CCTTC	3 cut(s)	274, 362, 434
HpyCH4III	ACNGT	2 cut(s)	370, 472
HpyCH4V	TGCA	7 cut(s)	14, 71, 152, 398, 602, 614, 677
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 230, 620, 680
HpyF3I	CTNAG	1 cut(s)	324
Hsp92II	CATG	4 cut(s)	248, 274, 346, 386
Kzo9I	GATC	3 cut(s)	59, 487, 581
LguI	GCTCTTC	1 cut(s)	60
Lsp1109I	GCAGC	5 cut(s)	136, 236, 391, 466, 661
LweI	GCATC	4 cut(s)	129, 136, 161, 437
MaeI	CTAG	3 cut(s)	6, 165, 492
MaeIII	GTNAC	3 cut(s)	259, 364, 742
MalI	GATC	3 cut(s)	61, 489, 583
MboI	GATC	3 cut(s)	59, 487, 581
MboII	GAAGA	4 cut(s)	47, 82, 419, 754
MfeI	CAATTG	1 cut(s)	528
MhlI	GDGCHC	2 cut(s)	116, 522
MluCI	AATT	4 cut(s)	39, 399, 411, 528
MnlI	CCTC	6 cut(s)	136, 217, 244, 275, 346, 742
MslI	CAYNNNNRTG	2 cut(s)	275, 291
MspI	CCGG	3 cut(s)	237, 593, 624
MspR9I	CCNGG	2 cut(s)	557, 593
MunI	CAATTG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	557
MwoI	GCNNNNNNNGC	4 cut(s)	11, 230, 620, 680
NciI	CCSGG	1 cut(s)	593
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	3 cut(s)	59, 487, 581
NlaIII	CATG	4 cut(s)	248, 274, 346, 386
NlaIV	GGNNCC	2 cut(s)	520, 547
NmeAIII	GCCGAG	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	259
NspI	RCATGY	1 cut(s)	386
OliI	CACNNNNGTG	1 cut(s)	291
PciSI	GCTCTTC	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	728
PkrI	GCNGC	6 cut(s)	151, 226, 242, 381, 481, 676
PpuMI	RGGWCCY	1 cut(s)	659
Psp5II	RGGWCCY	1 cut(s)	659
Psp6I	CCWGG	1 cut(s)	555
PspFI	CCCAGC	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	555
PspN4I	GGNNCC	2 cut(s)	520, 547
PspOMI	GGGCCC	1 cut(s)	518
PspPI	GGNCC	5 cut(s)	518, 519, 546, 566, 659
PspPPI	RGGWCCY	1 cut(s)	659
PstI	CTGCAG	2 cut(s)	616, 679
PstNI	CAGNNNCTG	2 cut(s)	149, 683
RsaI	GTAC	3 cut(s)	218, 467, 650
RsaNI	GTAC	3 cut(s)	217, 466, 649
RseI	CAYNNNNRTG	2 cut(s)	275, 291
SapI	GCTCTTC	1 cut(s)	60
SatI	GCNGC	6 cut(s)	150, 225, 241, 380, 480, 675
Sau3AI	GATC	3 cut(s)	59, 487, 581
Sau96I	GGNCC	5 cut(s)	518, 519, 546, 566, 659
ScrFI	CCNGG	2 cut(s)	557, 593
SduI	GDGCHC	2 cut(s)	116, 522
SetI	ASST	7 cut(s)	166, 266, 421, 445, 632, 646, 664
SfaNI	GCATC	4 cut(s)	129, 136, 161, 437
SfcI	CTRYAG	2 cut(s)	612, 675
SinI	GGWCC	1 cut(s)	659
SmiMI	CAYNNNNRTG	2 cut(s)	275, 291
Sse9I	AATT	4 cut(s)	39, 399, 411, 528
SsiI	CCGC	2 cut(s)	240, 503
SspMI	CTAG	3 cut(s)	6, 165, 492
StyD4I	CCNGG	2 cut(s)	555, 591
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	2 cut(s)	370, 472
TaqI	TCGA	2 cut(s)	25, 58
TasI	AATT	4 cut(s)	39, 399, 411, 528
TatI	WGTACW	3 cut(s)	216, 465, 648
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	728
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	5 cut(s)	149, 224, 379, 479, 674
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	67, 602
VpaK11BI	GGWCC	1 cut(s)	659
XceI	RCATGY	1 cut(s)	386
XspI	CTAG	3 cut(s)	6, 165, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.