Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0016136

Physical Location & Seq

Genomic Coordinates Reverse (-)

48758470 .. 48759934

Gene Structure 1465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG356500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCTAGGATTGCGCTGGCTGCTCGATTCCAACAAGTAATTACTCCCAATGCTCTCCGATCTTATCTTGCAGAGTTCATCTCAACCTTCTTCTTCGTCTTCGCTGTTGTCGGTTCGATGATGTCCTCCAGAAAGTTGATGCCAGATGCTGCATCAGACCCAGCTAGTCTGGTGTTGGTTGCCATCACCAATGCCTTTGCACTGGCCTCGGCCATTTACATCTCGGCCTCCACCTCCGGTGGGCATGTAAATCCTGCCGTCACCTTTGCCATGGCCGTCGGAGGTCACATTAGTGTCCCCATTGCCCTCATCTACTGGATTTGCCAAATGGTGGCTGCTGTCATGGCTTGCCTTCTCTTAAAAGTCACTGTTGTTGGACAGCATGTTCCAACATATGCAATTACAGAAGAAATGACAGGATTTGGAGCCTCAGTTTTGGAGGGTGTGCTAACATTTGCACTAGTTTACACTGTTTATGCTGCTGGTGATCCAAGACATGGTGCATTGGGGGCTATGGGGCCCTTAGCCATCGGGCTCATGGCAGGGGCCAATGTATTGGCAACCGGGCCGTTCTCCGGCGGATCCATGAACCCGGCTTGTGCATTCGGGTCTGCAGTCATTGCTGGTAGCTTCAAGAACCAAGCGGTTTACTGGGTCGGACCGTTGATTGGTGCTGCAGTTGCTGGTCTTTTGTATGACAATGTGGTGTTCCCTATTCAAGATTCGAGTACTGGGAATGCAGATGGAATTGTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009705 GO:0009987 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0019953 GO:0022412 GO:0022414 GO:0022803 GO:0022838 GO:0022857 GO:0030154 GO:0031090 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0042887 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0090406 GO:0098588 GO:0098805 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

252

Amino Acids

25.79

Weight (kDa)

6.01

Isoelectric Point (pI)

29.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	15 - 232	5.2e-57	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47440
fragaria_vesca	FvH4_7g27390
malus_domestica	MD01G1182400.v1.1 MD07G1253000.v1.1
prunus_persica	Prupe.2G276600_v2.0.a1
pyrus_communis	pycom01g19240
rosa_chinensis	RchiOBHm_Chr1g0374221
rosa_laevigata	RLG00000026754
rosa_roxburghii	Rroxscaffold_4G00283630
rosa_rugosa	Rorug01G0381600
rosa_samantha	Rh1AG392500 Rh1BG356500 Rh1CG369500 Rh1DG387000
rosa_wichuraiana	Rw1G034320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	331, 497
AciI	CCGC	2 cut(s)	579, 644
AclWI	GGATC	3 cut(s)	482, 576, 589
AcoI	YGGCCR	2 cut(s)	210, 273
AfaI	GTAC	1 cut(s)	730
AfiI	CCNNNNNNNGG	5 cut(s)	240, 331, 497, 575, 668
AgsI	TTSAA	2 cut(s)	634, 719
AhlI	ACTAGT	1 cut(s)	460
AleI	CACNNNNGTG	1 cut(s)	291
AloI	GAACNNNNNNTCC	2 cut(s)	369, 401
AluBI	AGCT	2 cut(s)	164, 630
AluI	AGCT	2 cut(s)	164, 630
AlwI	GGATC	3 cut(s)	482, 576, 589
AlwNI	CAGNNNCTG	2 cut(s)	149, 683
AoxI	GGCC	7 cut(s)	204, 210, 225, 273, 518, 546, 566
ApaI	GGGCCC	1 cut(s)	522
ApeKI	GCWGC	5 cut(s)	20, 149, 335, 479, 674
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	5 cut(s)	518, 519, 546, 566, 659
AsuC2I	CCSGG	2 cut(s)	565, 593
AsuHPI	GGTGA	3 cut(s)	178, 253, 497
AvaII	GGWCC	1 cut(s)	659
BaeGI	GKGCMC	1 cut(s)	522
BamHI	GGATCC	1 cut(s)	581
BanII	GRGCYC	2 cut(s)	522, 537
BbsI	GAAGAC	1 cut(s)	91
BbvI	GCAGC	5 cut(s)	7, 136, 322, 466, 661
BccI	CCATC	3 cut(s)	191, 536, 737
BceAI	ACGGC	3 cut(s)	242, 260, 553
BcgI	CGANNNNNNTGC	2 cut(s)	189, 223
BcnI	CCSGG	2 cut(s)	565, 593
BcuI	ACTAGT	1 cut(s)	460
BfaI	CTAG	3 cut(s)	6, 165, 461
BfmI	CTRYAG	2 cut(s)	612, 675
BisI	GCNGC	5 cut(s)	21, 150, 336, 480, 675
BlsI	GCNGC	5 cut(s)	22, 151, 337, 481, 676
BmcAI	AGTACT	1 cut(s)	730
Bme1390I	CCNGG	2 cut(s)	565, 593
Bme18I	GGWCC	1 cut(s)	659
BmgT120I	GGNCC	5 cut(s)	518, 519, 546, 566, 659
BmiI	GGNNCC	5 cut(s)	427, 519, 520, 547, 583
BmrFI	CCNGG	2 cut(s)	565, 593
BmrI	ACTGGG	2 cut(s)	661, 741
BmsI	GCATC	3 cut(s)	129, 136, 161
BmuI	ACTGGG	2 cut(s)	661, 741
BpiI	GAAGAC	1 cut(s)	91
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	523
BpuMI	CCSGG	2 cut(s)	565, 593
BsaJI	CCNNGG	2 cut(s)	207, 270
BsaWI	WCCGGW	1 cut(s)	236
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	5 cut(s)	240, 331, 497, 575, 668
Bse1I	ACTGG	4 cut(s)	207, 320, 656, 736
Bse3DI	GCAATG	2 cut(s)	300, 618
BseDI	CCNNGG	2 cut(s)	207, 270
BseLI	CCNNNNNNNGG	5 cut(s)	240, 331, 497, 575, 668
BseMI	GCAATG	2 cut(s)	300, 618
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	4 cut(s)	207, 320, 656, 736
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	5 cut(s)	7, 136, 322, 466, 661
BseYI	CCCAGC	1 cut(s)	160
BshFI	GGCC	7 cut(s)	206, 212, 227, 275, 520, 548, 568
BsiSI	CCGG	4 cut(s)	237, 564, 576, 593
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	5 cut(s)	240, 331, 497, 575, 668
BsmFI	GGGAC	1 cut(s)	281
BsmI	GAATGC	2 cut(s)	602, 742
BsnI	GGCC	7 cut(s)	206, 212, 227, 275, 520, 548, 568
Bsp120I	GGGCCC	1 cut(s)	518
Bsp1286I	GDGCHC	2 cut(s)	522, 537
Bsp143I	GATC	3 cut(s)	59, 487, 581
Bsp19I	CCATGG	1 cut(s)	270
BspACI	CCGC	2 cut(s)	579, 644
BspANI	GGCC	7 cut(s)	206, 212, 227, 275, 520, 548, 568
BspCNI	CTCAG	1 cut(s)	443
BspLI	GGNNCC	5 cut(s)	427, 519, 520, 547, 583
BspMAI	CTGCAG	2 cut(s)	616, 679
BspPI	GGATC	3 cut(s)	482, 576, 589
BsrDI	GCAATG	2 cut(s)	300, 618
BsrI	ACTGG	4 cut(s)	207, 320, 656, 736
BssECI	CCNNGG	2 cut(s)	207, 270
BssMI	GATC	3 cut(s)	59, 487, 581
BssT1I	CCWWGG	1 cut(s)	270
Bst4CI	ACNGT	3 cut(s)	370, 472, 663
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstC8I	GCNNGC	2 cut(s)	18, 349
BstDEI	CTNAG	2 cut(s)	430, 523
BstDSI	CCRYGG	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	3 cut(s)	62, 490, 584
BstMBI	GATC	3 cut(s)	59, 487, 581
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 20, 344, 509, 620, 680
BstNSI	RCATGY	2 cut(s)	248, 386
BstSCI	CCNGG	2 cut(s)	563, 591
BstSFI	CTRYAG	2 cut(s)	612, 675
BstSLI	GKGCMC	1 cut(s)	522
BstV1I	GCAGC	5 cut(s)	7, 136, 322, 466, 661
BstV2I	GAAGAC	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	581
BstXI	CCANNNNNNTGG	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	581
BsuRI	GGCC	7 cut(s)	206, 212, 227, 275, 520, 548, 568
BtgI	CCRYGG	1 cut(s)	270
BtsIMutI	CAGTG	3 cut(s)	200, 366, 468
Cac8I	GCNNGC	2 cut(s)	18, 349
CaiI	CAGNNNCTG	2 cut(s)	149, 683
CfoI	GCGC	1 cut(s)	16
Cfr13I	GGNCC	5 cut(s)	518, 519, 546, 566, 659
CpoI	CGGWCCG	1 cut(s)	659
Csp6I	GTAC	1 cut(s)	729
CspI	CGGWCCG	1 cut(s)	659
CviAII	CATG	7 cut(s)	245, 271, 343, 383, 497, 538, 586
CviQI	GTAC	1 cut(s)	729
DdeI	CTNAG	2 cut(s)	430, 523
DpnI	GATC	3 cut(s)	61, 489, 583
DpnII	GATC	3 cut(s)	59, 487, 581
EaeI	YGGCCR	2 cut(s)	210, 273
EciI	GGCGGA	1 cut(s)	594
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	2 cut(s)	522, 537
Eco47I	GGWCC	1 cut(s)	659
EcoO109I	RGGNCCY	2 cut(s)	518, 519
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	2 cut(s)	522, 537
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	7 cut(s)	248, 274, 346, 386, 500, 541, 589
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	7 cut(s)	244, 270, 342, 382, 496, 537, 585
FauNDI	CATATG	1 cut(s)	394
Fnu4HI	GCNGC	5 cut(s)	21, 150, 336, 480, 675
FriOI	GRGCYC	2 cut(s)	522, 537
Fsp4HI	GCNGC	5 cut(s)	21, 150, 336, 480, 675
FspBI	CTAG	3 cut(s)	6, 165, 461
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	5 cut(s)	21, 150, 336, 480, 675
GsaI	CCCAGC	1 cut(s)	164
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	7 cut(s)	206, 212, 227, 275, 520, 548, 568
HapII	CCGG	4 cut(s)	237, 564, 576, 593
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	7 cut(s)	248, 274, 346, 386, 500, 541, 589
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HinfI	GANTC	2 cut(s)	27, 722
HpaII	CCGG	4 cut(s)	237, 564, 576, 593
HphI	GGTGA	3 cut(s)	178, 253, 497
Hpy166II	GTNNAC	2 cut(s)	466, 649
Hpy188I	TCNGA	4 cut(s)	59, 157, 281, 659
Hpy188III	TCNNGA	3 cut(s)	129, 634, 719
Hpy8I	GTNNAC	2 cut(s)	466, 649
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	2 cut(s)	97, 362
HpyCH4III	ACNGT	3 cut(s)	370, 472, 663
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 20, 344, 509, 620, 680
HpyF3I	CTNAG	2 cut(s)	430, 523
Hsp92II	CATG	7 cut(s)	248, 274, 346, 386, 500, 541, 589
HspAI	GCGC	1 cut(s)	14
Kzo9I	GATC	3 cut(s)	59, 487, 581
LmnI	GCTCC	1 cut(s)	425
Lsp1109I	GCAGC	5 cut(s)	7, 136, 322, 466, 661
LweI	GCATC	3 cut(s)	129, 136, 161
MaeI	CTAG	3 cut(s)	6, 165, 461
MaeIII	GTNAC	3 cut(s)	259, 284, 364
MalI	GATC	3 cut(s)	61, 489, 583
MboI	GATC	3 cut(s)	59, 487, 581
MboII	GAAGA	4 cut(s)	82, 85, 91, 419
MflI	RGATCY	1 cut(s)	581
MhlI	GDGCHC	2 cut(s)	522, 537
MluCI	AATT	3 cut(s)	39, 399, 747
MmeI	TCCRAC	5 cut(s)	55, 259, 355, 413, 637
MnlI	CCTC	8 cut(s)	136, 217, 238, 244, 275, 317, 433, 439
MseI	TTAA	1 cut(s)	359
MslI	CAYNNNNRTG	1 cut(s)	291
MspI	CCGG	4 cut(s)	237, 564, 576, 593
MspR9I	CCNGG	2 cut(s)	565, 593
Mva1269I	GAATGC	2 cut(s)	602, 742
MwoI	GCNNNNNNNGC	6 cut(s)	11, 20, 344, 509, 620, 680
NciI	CCSGG	2 cut(s)	565, 593
NcoI	CCATGG	1 cut(s)	270
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	3 cut(s)	59, 487, 581
NlaIII	CATG	7 cut(s)	248, 274, 346, 386, 500, 541, 589
NlaIV	GGNNCC	5 cut(s)	427, 519, 520, 547, 583
NmeAIII	GCCGAG	2 cut(s)	188, 203
NmuCI	GTSAC	3 cut(s)	259, 284, 364
NspI	RCATGY	2 cut(s)	248, 386
OliI	CACNNNNGTG	1 cut(s)	291
PctI	GAATGC	2 cut(s)	602, 742
PfeI	GAWTC	2 cut(s)	27, 722
PflMI	CCANNNNNTGG	2 cut(s)	331, 497
PkrI	GCNGC	5 cut(s)	22, 151, 337, 481, 676
PspFI	CCCAGC	1 cut(s)	160
PspN4I	GGNNCC	5 cut(s)	427, 519, 520, 547, 583
PspOMI	GGGCCC	1 cut(s)	518
PspPI	GGNCC	5 cut(s)	518, 519, 546, 566, 659
PstI	CTGCAG	2 cut(s)	616, 679
PstNI	CAGNNNCTG	2 cut(s)	149, 683
PsuI	RGATCY	1 cut(s)	581
RsaI	GTAC	1 cut(s)	730
RsaNI	GTAC	1 cut(s)	729
RseI	CAYNNNNRTG	1 cut(s)	291
Rsr2I	CGGWCCG	1 cut(s)	659
RsrII	CGGWCCG	1 cut(s)	659
SaqAI	TTAA	1 cut(s)	359
SatI	GCNGC	5 cut(s)	21, 150, 336, 480, 675
Sau3AI	GATC	3 cut(s)	59, 487, 581
Sau96I	GGNCC	5 cut(s)	518, 519, 546, 566, 659
ScaI	AGTACT	1 cut(s)	730
ScrFI	CCNGG	2 cut(s)	565, 593
SduI	GDGCHC	2 cut(s)	522, 537
SetI	ASST	6 cut(s)	89, 166, 236, 266, 286, 632
SfaNI	GCATC	3 cut(s)	129, 136, 161
SfcI	CTRYAG	2 cut(s)	612, 675
SinI	GGWCC	1 cut(s)	659
SmiMI	CAYNNNNRTG	1 cut(s)	291
SpeI	ACTAGT	1 cut(s)	460
Sse9I	AATT	3 cut(s)	39, 399, 747
SsiI	CCGC	2 cut(s)	579, 644
SspMI	CTAG	3 cut(s)	6, 165, 461
StyD4I	CCNGG	2 cut(s)	563, 591
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	3 cut(s)	370, 472, 663
TaqI	TCGA	3 cut(s)	25, 116, 725
TasI	AATT	3 cut(s)	39, 399, 747
TatI	WGTACW	1 cut(s)	728
TfiI	GAWTC	2 cut(s)	27, 722
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TscAI	CASTG	3 cut(s)	207, 373, 475
TseFI	GTSAC	3 cut(s)	259, 284, 364
TseI	GCWGC	5 cut(s)	20, 149, 335, 479, 674
Tsp45I	GTSAC	3 cut(s)	259, 284, 364
TspDTI	ATGAA	2 cut(s)	67, 602
TspRI	CASTG	3 cut(s)	207, 373, 475
Van91I	CCANNNNNTGG	2 cut(s)	331, 497
VpaK11BI	GGWCC	1 cut(s)	659
XceI	RCATGY	2 cut(s)	248, 386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XspI	CTAG	3 cut(s)	6, 165, 461
ZrmI	AGTACT	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.