Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0016136

Physical Location & Seq

Genomic Coordinates Reverse (-)

28111538 .. 28112804

Gene Structure 1267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1182400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCTAGGATTGCATTGACCGCTCGACTTCAGAAAGCAATCACTCCCAGCGCCCTCCGATCTTATCTTGCAGAGTTCATATCAACCTTCTTCTTCGTGTTCACCGTTGTTGGCTCCATGATGTCGTCAAGGAAGTTGATGCCGGATACTGCATCGGATCCAGCAAGTTTGGTGATGGTTGCCGTCGCCAACGCCTTCGCATTGTCCTCGACCATGTACATTGCAGCCAACGTCTCCGGCGGCCACATCAACCCGGCAGTCACCTTTGGCATGGCGGTCGGAGGACACATTAGTGTTCTCAATGCCATCTGCTACTGGATTTCTCAGATGATGGCTTCTATCATGGCATGCCTTCTCTTGAAAGTCACAACTGTTGGACAGCATGTTCCGACCTACGGAATCACCGAAGAGATGACGGGTTTTGGGGCGTCGGTTTTGGAGGGCGTGCTGACATTTGGGCTGGTGTACACAGTTTATGTTGCCGGTGACCGAAGGCATGGTGCATTTGGGGGCGTTGGACCCCTGGCAGTTGGATTCATGGCAGGAGCCAATGTTTTAGCAACGGGGCCGTTCTCTGGTGGGTCTATGAACCCGGCTTGTGCATTCGGGTCGGCAGTCGTTTCCGGCAGTTTCAGGAACCAGGCGGTTTATTGGGTGGGGCCTCTGATTGGCGCGGCGGTTGCTGGACTACTGTATGATAATGTGGTGTACCCTACCCAATCTCCGGATTCTCTTACGGGATTTTCTTCGATTAATGTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009705 GO:0009987 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0019953 GO:0022412 GO:0022414 GO:0022803 GO:0022838 GO:0022857 GO:0030154 GO:0031090 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0042887 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0090406 GO:0098588 GO:0098805 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

255

Amino Acids

26.27

Weight (kDa)

7.74

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	15 - 232	2.6e-59	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47440
fragaria_vesca	FvH4_7g27390
malus_domestica	MD01G1182400.v1.1 MD07G1253000.v1.1
prunus_persica	Prupe.2G276600_v2.0.a1
pyrus_communis	pycom01g19240
rosa_chinensis	RchiOBHm_Chr1g0374221
rosa_laevigata	RLG00000026754
rosa_roxburghii	Rroxscaffold_4G00283630
rosa_rugosa	Rorug01G0381600
rosa_samantha	Rh1AG392500 Rh1BG356500 Rh1CG369500 Rh1DG387000
rosa_wichuraiana	Rw1G034320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	23
AccII	CGCG	1 cut(s)	674
AccIII	TCCGGA	1 cut(s)	724
AciI	CCGC	6 cut(s)	21, 240, 275, 644, 674, 677
AclWI	GGATC	2 cut(s)	152, 165
AcoI	YGGCCR	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	14
AcyI	GRCGYC	1 cut(s)	428
AfaI	GTAC	3 cut(s)	218, 467, 710
AfiI	CCNNNNNNNGG	4 cut(s)	395, 575, 668, 724
AgsI	TTSAA	1 cut(s)	361
AjnI	CCWGG	2 cut(s)	522, 639
AleI	CACNNNNGTG	1 cut(s)	291
AloI	GAACNNNNNNTCC	2 cut(s)	369, 401
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	2 cut(s)	152, 165
Aor13HI	TCCGGA	1 cut(s)	724
AoxI	GGCC	3 cut(s)	241, 566, 659
ApeKI	GCWGC	1 cut(s)	224
AseI	ATTAAT	1 cut(s)	753
AspLEI	GCGC	2 cut(s)	53, 674
AspS9I	GGNCC	3 cut(s)	518, 566, 659
AsuC2I	CCSGG	2 cut(s)	254, 593
AsuHPI	GGTGA	5 cut(s)	94, 184, 253, 394, 497
AvaII	GGWCC	1 cut(s)	518
BamHI	GGATCC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	3 cut(s)	169, 314, 325
BceAI	ACGGC	2 cut(s)	167, 553
BcgI	CGANNNNNNTGC	6 cut(s)	189, 223, 259, 293, 591, 625
BciT130I	CCWGG	2 cut(s)	524, 641
BciVI	GTATCC	1 cut(s)	139
BcnI	CCSGG	2 cut(s)	254, 593
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	54
BfuI	GTATCC	1 cut(s)	139
BisI	GCNGC	3 cut(s)	225, 241, 675
BlsI	GCNGC	3 cut(s)	226, 242, 676
Bme1390I	CCNGG	4 cut(s)	254, 524, 593, 641
Bme18I	GGWCC	1 cut(s)	518
BmgT120I	GGNCC	3 cut(s)	518, 566, 659
BmiI	GGNNCC	7 cut(s)	115, 159, 520, 547, 567, 638, 660
BmrFI	CCNGG	4 cut(s)	254, 524, 593, 641
BmsI	GCATC	2 cut(s)	129, 161
BpuMI	CCSGG	2 cut(s)	254, 593
BsaHI	GRCGYC	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	522
BsaWI	WCCGGW	1 cut(s)	724
BsaXI	ACNNNNNCTCC	4 cut(s)	537, 567, 706, 736
Bsc4I	CCNNNNNNNGG	4 cut(s)	395, 575, 668, 724
Bse118I	RCCGGY	1 cut(s)	482
Bse1I	ACTGG	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	219
BseAI	TCCGGA	1 cut(s)	724
BseBI	CCWGG	2 cut(s)	524, 641
BseDI	CCNNGG	1 cut(s)	522
BseLI	CCNNNNNNNGG	4 cut(s)	395, 575, 668, 724
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	236
BseYI	CCCAGC	1 cut(s)	47
Bsh1236I	CGCG	1 cut(s)	674
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	3 cut(s)	243, 568, 661
BsiEI	CGRYCG	1 cut(s)	279
BsiSI	CCGG	7 cut(s)	143, 237, 254, 483, 593, 624, 725
BslI	CCNNNNNNNGG	4 cut(s)	395, 575, 668, 724
BsmAI	GTCTC	1 cut(s)	238
BsmBI	CGTCTC	1 cut(s)	238
BsmI	GAATGC	1 cut(s)	602
BsnI	GGCC	3 cut(s)	243, 568, 661
Bsp13I	TCCGGA	1 cut(s)	724
Bsp1407I	TGTACA	2 cut(s)	216, 465
Bsp143I	GATC	2 cut(s)	59, 157
BspACI	CCGC	6 cut(s)	21, 240, 275, 644, 674, 677
BspANI	GGCC	3 cut(s)	243, 568, 661
BspCNI	CTCAG	1 cut(s)	337
BspEI	TCCGGA	1 cut(s)	724
BspFNI	CGCG	1 cut(s)	674
BspLI	GGNNCC	7 cut(s)	115, 159, 520, 547, 567, 638, 660
BspPI	GGATC	2 cut(s)	152, 165
BsrBI	CCGCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	482
BsrGI	TGTACA	2 cut(s)	216, 465
BsrI	ACTGG	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	482
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	2 cut(s)	59, 157
BssNI	GRCGYC	1 cut(s)	428
Bst2UI	CCWGG	2 cut(s)	524, 641
Bst4CI	ACNGT	4 cut(s)	106, 373, 472, 693
Bst6I	CTCTTC	1 cut(s)	402
BstACI	GRCGYC	1 cut(s)	428
BstAUI	TGTACA	2 cut(s)	216, 465
BstC8I	GCNNGC	2 cut(s)	349, 446
BstDEI	CTNAG	2 cut(s)	324, 762
BstEII	GGTNACC	1 cut(s)	485
BstFNI	CGCG	1 cut(s)	674
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	53, 674
BstKTI	GATC	2 cut(s)	62, 160
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	2 cut(s)	59, 157
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 20, 680
BstNI	CCWGG	2 cut(s)	524, 641
BstNSI	RCATGY	2 cut(s)	351, 386
BstPI	GGTNACC	1 cut(s)	485
BstSCI	CCNGG	4 cut(s)	252, 522, 591, 639
BstUI	CGCG	1 cut(s)	674
BstV1I	GCAGC	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuI	GTATCC	1 cut(s)	139
BsuRI	GGCC	3 cut(s)	243, 568, 661
Cac8I	GCNNGC	2 cut(s)	349, 446
CfoI	GCGC	2 cut(s)	53, 674
Cfr10I	RCCGGY	1 cut(s)	482
Cfr13I	GGNCC	3 cut(s)	518, 566, 659
CseI	GACGC	1 cut(s)	417
Csp6I	GTAC	3 cut(s)	217, 466, 709
CviAII	CATG	8 cut(s)	118, 214, 271, 343, 348, 383, 497, 538
CviQI	GTAC	3 cut(s)	217, 466, 709
DdeI	CTNAG	2 cut(s)	324, 762
DpnI	GATC	2 cut(s)	61, 159
DpnII	GATC	2 cut(s)	59, 157
EaeI	YGGCCR	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	518
Eco57I	CTGAAG	1 cut(s)	14
Eco91I	GGTNACC	1 cut(s)	485
EcoO109I	RGGNCCY	1 cut(s)	659
EcoO65I	GGTNACC	1 cut(s)	485
EcoRII	CCWGG	2 cut(s)	522, 639
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	8 cut(s)	121, 217, 274, 346, 351, 386, 500, 541
FatI	CATG	8 cut(s)	117, 213, 270, 342, 347, 382, 496, 537
Fnu4HI	GCNGC	3 cut(s)	225, 241, 675
Fsp4HI	GCNGC	3 cut(s)	225, 241, 675
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	2 cut(s)	52, 673
GluI	GCNGC	3 cut(s)	225, 241, 675
GsaI	CCCAGC	1 cut(s)	51
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	3 cut(s)	243, 568, 661
HapII	CCGG	7 cut(s)	143, 237, 254, 483, 593, 624, 725
HgaI	GACGC	1 cut(s)	417
HhaI	GCGC	2 cut(s)	53, 674
Hin1I	GRCGYC	1 cut(s)	428
Hin1II	CATG	8 cut(s)	121, 217, 274, 346, 351, 386, 500, 541
Hin6I	GCGC	2 cut(s)	51, 672
HinP1I	GCGC	2 cut(s)	51, 672
HinfI	GANTC	3 cut(s)	399, 534, 728
HpaII	CCGG	7 cut(s)	143, 237, 254, 483, 593, 624, 725
HphI	GGTGA	5 cut(s)	94, 184, 253, 394, 497
Hpy166II	GTNNAC	4 cut(s)	102, 466, 468, 709
Hpy188I	TCNGA	7 cut(s)	33, 59, 157, 281, 327, 390, 666
Hpy188III	TCNNGA	3 cut(s)	358, 634, 725
Hpy8I	GTNNAC	4 cut(s)	102, 466, 468, 709
Hpy99I	CGWCG	2 cut(s)	188, 433
HpyAV	CCTTC	4 cut(s)	97, 205, 362, 486
HpyCH4III	ACNGT	4 cut(s)	106, 373, 472, 693
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	6 cut(s)	14, 71, 152, 224, 503, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 20, 680
HpyF3I	CTNAG	2 cut(s)	324, 762
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	1 cut(s)	428
Hsp92II	CATG	8 cut(s)	121, 217, 274, 346, 351, 386, 500, 541
HspAI	GCGC	2 cut(s)	51, 672
Kpn2I	TCCGGA	1 cut(s)	724
Kzo9I	GATC	2 cut(s)	59, 157
LmnI	GCTCC	2 cut(s)	119, 545
Lsp1109I	GCAGC	1 cut(s)	236
LweI	GCATC	2 cut(s)	129, 161
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	3 cut(s)	259, 364, 485
MalI	GATC	2 cut(s)	61, 159
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	2 cut(s)	59, 157
MboII	GAAGA	4 cut(s)	82, 85, 419, 738
MflI	RGATCY	1 cut(s)	157
MmeI	TCCRAC	5 cut(s)	259, 355, 413, 496, 511
MnlI	CCTC	5 cut(s)	65, 217, 275, 433, 672
MroI	TCCGGA	1 cut(s)	724
MseI	TTAA	1 cut(s)	753
MslI	CAYNNNNRTG	1 cut(s)	291
MspI	CCGG	7 cut(s)	143, 237, 254, 483, 593, 624, 725
MspR9I	CCNGG	4 cut(s)	254, 524, 593, 641
Mva1269I	GAATGC	1 cut(s)	602
MvaI	CCWGG	2 cut(s)	524, 641
MvnI	CGCG	1 cut(s)	674
MwoI	GCNNNNNNNGC	3 cut(s)	11, 20, 680
NciI	CCSGG	2 cut(s)	254, 593
NdeII	GATC	2 cut(s)	59, 157
NlaIII	CATG	8 cut(s)	121, 217, 274, 346, 351, 386, 500, 541
NlaIV	GGNNCC	7 cut(s)	115, 159, 520, 547, 567, 638, 660
NmuCI	GTSAC	3 cut(s)	259, 364, 485
NspI	RCATGY	2 cut(s)	351, 386
OliI	CACNNNNGTG	1 cut(s)	291
PaeI	GCATGC	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 402
PctI	GAATGC	1 cut(s)	602
PfeI	GAWTC	3 cut(s)	399, 534, 728
PkrI	GCNGC	3 cut(s)	226, 242, 676
PshBI	ATTAAT	1 cut(s)	753
Psp6I	CCWGG	2 cut(s)	522, 639
PspEI	GGTNACC	1 cut(s)	485
PspFI	CCCAGC	1 cut(s)	47
PspGI	CCWGG	2 cut(s)	522, 639
PspN4I	GGNNCC	7 cut(s)	115, 159, 520, 547, 567, 638, 660
PspPI	GGNCC	3 cut(s)	518, 566, 659
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	3 cut(s)	218, 467, 710
RsaNI	GTAC	3 cut(s)	217, 466, 709
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	753
SatI	GCNGC	3 cut(s)	225, 241, 675
Sau3AI	GATC	2 cut(s)	59, 157
Sau96I	GGNCC	3 cut(s)	518, 566, 659
ScrFI	CCNGG	4 cut(s)	254, 524, 593, 641
SetI	ASST	4 cut(s)	89, 234, 266, 395
SfaNI	GCATC	2 cut(s)	129, 161
SinI	GGWCC	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	291
SphI	GCATGC	1 cut(s)	351
SsiI	CCGC	6 cut(s)	21, 240, 275, 644, 674, 677
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	4 cut(s)	252, 522, 591, 639
TaaI	ACNGT	4 cut(s)	106, 373, 472, 693
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	3 cut(s)	25, 209, 749
TaqII	GACCGA	1 cut(s)	504
TatI	WGTACW	2 cut(s)	216, 465
TauI	GCSGC	2 cut(s)	243, 677
TfiI	GAWTC	3 cut(s)	399, 534, 728
Tru1I	TTAA	1 cut(s)	753
Tru9I	TTAA	1 cut(s)	753
TseFI	GTSAC	3 cut(s)	259, 364, 485
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	3 cut(s)	259, 364, 485
TspDTI	ATGAA	3 cut(s)	67, 526, 602
TspGWI	ACGGA	1 cut(s)	411
VpaK11BI	GGWCC	1 cut(s)	518
VspI	ATTAAT	1 cut(s)	753
XceI	RCATGY	2 cut(s)	351, 386
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.