Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0016136

Physical Location & Seq

Genomic Coordinates Reverse (-)

17995443 .. 17996733

Gene Structure 1291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g19240.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCTAGGATTGCATTGACCGCTCGACTTCAGAAAGCAATCACCCCCAACGCCCTCCGATCTTATCTTGCAGAGTTCATATCAACCTTCTTCTTCGTGTTCACTGTTGTTGGCTCCATGATGTCGTCAAGGAAGTTGATGCCGGATGCTGCATCATCAGATCCAGCAGGTTTGGTGATGGTTGCCGTTGCCAACGCCTTCGCATTGTCCTCGGCCATGTACATTGCAGCCAACGTCTCCGGCGGCCACATCAACCCGGCAGTCACCTTCGGCATGGCGGTCGGAGGACACATTAGTGTCCTCACTGCCATCTGCTACTGGATTTCTCAGATGGTGGCTTCTATCATGGCATGCCTTCTCTTGAAAGTCACTACCGTTGGACAGCATGTTCCGACCTACGGAATCACTGAAGAGATGACGGGTTTCGGGGCGTCGGTTTTGGAGGGCGTGCTGACATTTGGGATGGTGTACGCTGTTTATATTGCCGGTGACCGAAGGCATGGTGCATTTGGGGGCATTGGACCCCTGGCAGTTGGGTTCATGGCCGGAGCAAGCGTTTTAGCAACCGGGCCGTTCTCTGGTGGGTCCATGAACCCGGCTTGTGCATTCGGGTCGGCAGTCGTTGCCGGCAGTTTCAGGAACCAGGCGGTTTATTGGGTGGGGCCTCTGATTGGCGCGGCGGTTGCTGGACTACTGTATGATAATGTGGTGTACCCTACCCAATGTCCGGATTCTCTTACGGGGATTTCTACGGGATTTTCTTCGATTAATGTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009705 GO:0009987 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0019953 GO:0022412 GO:0022414 GO:0022803 GO:0022838 GO:0022857 GO:0030154 GO:0031090 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0042887 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0090406 GO:0098588 GO:0098805 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

260

Amino Acids

26.6

Weight (kDa)

7.69

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47440
fragaria_vesca	FvH4_7g27390
malus_domestica	MD01G1182400.v1.1 MD07G1253000.v1.1
prunus_persica	Prupe.2G276600_v2.0.a1
pyrus_communis	pycom01g19240
rosa_chinensis	RchiOBHm_Chr1g0374221
rosa_laevigata	RLG00000026754
rosa_roxburghii	Rroxscaffold_4G00283630
rosa_rugosa	Rorug01G0381600
rosa_samantha	Rh1AG392500 Rh1BG356500 Rh1CG369500 Rh1DG387000
rosa_wichuraiana	Rw1G034320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	158
AccBSI	CCGCTC	1 cut(s)	23
AccII	CGCG	1 cut(s)	677
AccIII	TCCGGA	1 cut(s)	727
AciI	CCGC	6 cut(s)	21, 243, 278, 647, 677, 680
AclWI	GGATC	1 cut(s)	155
AcoI	YGGCCR	3 cut(s)	213, 244, 543
AcuI	CTGAAG	2 cut(s)	14, 429
AcyI	GRCGYC	1 cut(s)	431
AfaI	GTAC	3 cut(s)	221, 470, 713
AfiI	CCNNNNNNNGG	4 cut(s)	398, 578, 671, 727
AgsI	TTSAA	1 cut(s)	364
AjnI	CCWGG	2 cut(s)	525, 642
AleI	CACNNNNGTG	1 cut(s)	294
AloI	GAACNNNNNNTCC	2 cut(s)	372, 404
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	1 cut(s)	155
Aor13HI	TCCGGA	1 cut(s)	727
AoxI	GGCC	5 cut(s)	213, 244, 543, 569, 662
ApeKI	GCWGC	2 cut(s)	149, 227
AseI	ATTAAT	1 cut(s)	768
AspLEI	GCGC	1 cut(s)	677
AspS9I	GGNCC	4 cut(s)	521, 569, 585, 662
AsuC2I	CCSGG	3 cut(s)	257, 568, 596
AsuHPI	GGTGA	4 cut(s)	34, 187, 256, 500
AvaII	GGWCC	2 cut(s)	521, 585
BbvI	GCAGC	2 cut(s)	136, 239
BccI	CCATC	4 cut(s)	172, 317, 325, 457
BceAI	ACGGC	2 cut(s)	170, 556
BcgI	CGANNNNNNTGC	6 cut(s)	192, 226, 262, 296, 594, 628
BciT130I	CCWGG	2 cut(s)	527, 644
BcnI	CCSGG	3 cut(s)	257, 568, 596
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	1 cut(s)	6
BfuAI	ACCTGC	1 cut(s)	158
BisI	GCNGC	4 cut(s)	150, 228, 244, 678
BlsI	GCNGC	4 cut(s)	151, 229, 245, 679
Bme1390I	CCNGG	5 cut(s)	257, 527, 568, 596, 644
Bme18I	GGWCC	2 cut(s)	521, 585
BmgT120I	GGNCC	4 cut(s)	521, 569, 585, 662
BmiI	GGNNCC	5 cut(s)	115, 523, 586, 641, 663
BmrFI	CCNGG	5 cut(s)	257, 527, 568, 596, 644
BmsI	GCATC	3 cut(s)	129, 136, 161
BpuMI	CCSGG	3 cut(s)	257, 568, 596
BsaHI	GRCGYC	1 cut(s)	431
BsaJI	CCNNGG	2 cut(s)	210, 525
BsaWI	WCCGGW	1 cut(s)	727
BsaXI	ACNNNNNCTCC	2 cut(s)	540, 570
Bsc4I	CCNNNNNNNGG	4 cut(s)	398, 578, 671, 727
Bse118I	RCCGGY	2 cut(s)	485, 626
Bse1I	ACTGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	222
BseAI	TCCGGA	1 cut(s)	727
BseBI	CCWGG	2 cut(s)	527, 644
BseDI	CCNNGG	2 cut(s)	210, 525
BseGI	GGATG	2 cut(s)	151, 468
BseLI	CCNNNNNNNGG	4 cut(s)	398, 578, 671, 727
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	1 cut(s)	323
BseXI	GCAGC	2 cut(s)	136, 239
Bsh1236I	CGCG	1 cut(s)	677
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	5 cut(s)	215, 246, 545, 571, 664
BsiEI	CGRYCG	1 cut(s)	282
BsiSI	CCGG	9 cut(s)	143, 240, 257, 486, 546, 567, 596, 627, 728
BslI	CCNNNNNNNGG	4 cut(s)	398, 578, 671, 727
BsmAI	GTCTC	1 cut(s)	241
BsmBI	CGTCTC	1 cut(s)	241
BsmI	GAATGC	1 cut(s)	605
BsnI	GGCC	5 cut(s)	215, 246, 545, 571, 664
Bsp13I	TCCGGA	1 cut(s)	727
Bsp1407I	TGTACA	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	59, 160
BspACI	CCGC	6 cut(s)	21, 243, 278, 647, 677, 680
BspANI	GGCC	5 cut(s)	215, 246, 545, 571, 664
BspCNI	CTCAG	1 cut(s)	340
BspEI	TCCGGA	1 cut(s)	727
BspFNI	CGCG	1 cut(s)	677
BspLI	GGNNCC	5 cut(s)	115, 523, 586, 641, 663
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	1 cut(s)	155
BsrBI	CCGCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	222
BsrFI	RCCGGY	2 cut(s)	485, 626
BsrGI	TGTACA	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	323
BssAI	RCCGGY	2 cut(s)	485, 626
BssECI	CCNNGG	2 cut(s)	210, 525
BssMI	GATC	2 cut(s)	59, 160
BssNI	GRCGYC	1 cut(s)	431
Bst2UI	CCWGG	2 cut(s)	527, 644
Bst4CI	ACNGT	3 cut(s)	106, 376, 696
Bst6I	CTCTTC	1 cut(s)	405
BstACI	GRCGYC	1 cut(s)	431
BstAPI	GCANNNNNTGC	1 cut(s)	623
BstAUI	TGTACA	1 cut(s)	219
BstC8I	GCNNGC	4 cut(s)	352, 449, 553, 628
BstDEI	CTNAG	2 cut(s)	327, 777
BstEII	GGTNACC	1 cut(s)	488
BstF5I	GGATG	2 cut(s)	151, 468
BstFNI	CGCG	1 cut(s)	677
BstHHI	GCGC	1 cut(s)	677
BstKTI	GATC	2 cut(s)	62, 163
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	2 cut(s)	59, 160
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 20, 623, 683
BstNI	CCWGG	2 cut(s)	527, 644
BstNSI	RCATGY	2 cut(s)	354, 389
BstPI	GGTNACC	1 cut(s)	488
BstSCI	CCNGG	5 cut(s)	255, 525, 566, 594, 642
BstUI	CGCG	1 cut(s)	677
BstV1I	GCAGC	2 cut(s)	136, 239
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	5 cut(s)	215, 246, 545, 571, 664
BtsCI	GGATG	2 cut(s)	151, 468
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	3 cut(s)	102, 303, 405
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	4 cut(s)	352, 449, 553, 628
CfoI	GCGC	1 cut(s)	677
Cfr10I	RCCGGY	2 cut(s)	485, 626
Cfr13I	GGNCC	4 cut(s)	521, 569, 585, 662
CseI	GACGC	1 cut(s)	420
Csp6I	GTAC	3 cut(s)	220, 469, 712
CviAII	CATG	9 cut(s)	118, 217, 274, 346, 351, 386, 500, 541, 589
CviQI	GTAC	3 cut(s)	220, 469, 712
DdeI	CTNAG	2 cut(s)	327, 777
DpnI	GATC	2 cut(s)	61, 162
DpnII	GATC	2 cut(s)	59, 160
EaeI	YGGCCR	3 cut(s)	213, 244, 543
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco47I	GGWCC	2 cut(s)	521, 585
Eco57I	CTGAAG	2 cut(s)	14, 429
Eco91I	GGTNACC	1 cut(s)	488
EcoO109I	RGGNCCY	1 cut(s)	662
EcoO65I	GGTNACC	1 cut(s)	488
EcoRII	CCWGG	2 cut(s)	525, 642
Esp3I	CGTCTC	1 cut(s)	241
FaeI	CATG	9 cut(s)	121, 220, 277, 349, 354, 389, 503, 544, 592
FatI	CATG	9 cut(s)	117, 216, 273, 345, 350, 385, 499, 540, 588
Fnu4HI	GCNGC	4 cut(s)	150, 228, 244, 678
FokI	GGATG	2 cut(s)	158, 475
Fsp4HI	GCNGC	4 cut(s)	150, 228, 244, 678
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	676
GluI	GCNGC	4 cut(s)	150, 228, 244, 678
HaeIII	GGCC	5 cut(s)	215, 246, 545, 571, 664
HapII	CCGG	9 cut(s)	143, 240, 257, 486, 546, 567, 596, 627, 728
HgaI	GACGC	1 cut(s)	420
HhaI	GCGC	1 cut(s)	677
Hin1I	GRCGYC	1 cut(s)	431
Hin1II	CATG	9 cut(s)	121, 220, 277, 349, 354, 389, 503, 544, 592
Hin6I	GCGC	1 cut(s)	675
HinP1I	GCGC	1 cut(s)	675
HinfI	GANTC	2 cut(s)	402, 731
HpaII	CCGG	9 cut(s)	143, 240, 257, 486, 546, 567, 596, 627, 728
HphI	GGTGA	4 cut(s)	34, 187, 256, 500
Hpy166II	GTNNAC	3 cut(s)	102, 469, 712
Hpy188I	TCNGA	7 cut(s)	33, 59, 160, 284, 330, 393, 669
Hpy188III	TCNNGA	3 cut(s)	361, 637, 728
Hpy8I	GTNNAC	3 cut(s)	102, 469, 712
Hpy99I	CGWCG	1 cut(s)	436
HpyAV	CCTTC	5 cut(s)	97, 208, 277, 365, 489
HpyCH4III	ACNGT	3 cut(s)	106, 376, 696
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	6 cut(s)	14, 71, 152, 227, 506, 605
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 20, 623, 683
HpyF3I	CTNAG	2 cut(s)	327, 777
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	431
Hsp92II	CATG	9 cut(s)	121, 220, 277, 349, 354, 389, 503, 544, 592
HspAI	GCGC	1 cut(s)	675
Kpn2I	TCCGGA	1 cut(s)	727
KroI	GCCGGC	1 cut(s)	626
KroNI	GCCGGC	1 cut(s)	628
Kzo9I	GATC	2 cut(s)	59, 160
LmnI	GCTCC	2 cut(s)	119, 548
Lsp1109I	GCAGC	2 cut(s)	136, 239
LweI	GCATC	3 cut(s)	129, 136, 161
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	3 cut(s)	262, 367, 488
MalI	GATC	2 cut(s)	61, 162
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	2 cut(s)	59, 160
MboII	GAAGA	4 cut(s)	82, 85, 422, 753
MflI	RGATCY	1 cut(s)	160
MmeI	TCCRAC	3 cut(s)	262, 358, 416
MnlI	CCTC	6 cut(s)	65, 220, 278, 311, 436, 675
MroI	TCCGGA	1 cut(s)	727
MroNI	GCCGGC	1 cut(s)	626
MseI	TTAA	1 cut(s)	768
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	9 cut(s)	143, 240, 257, 486, 546, 567, 596, 627, 728
MspR9I	CCNGG	5 cut(s)	257, 527, 568, 596, 644
Mva1269I	GAATGC	1 cut(s)	605
MvaI	CCWGG	2 cut(s)	527, 644
MvnI	CGCG	1 cut(s)	677
MwoI	GCNNNNNNNGC	4 cut(s)	11, 20, 623, 683
NaeI	GCCGGC	1 cut(s)	628
NciI	CCSGG	3 cut(s)	257, 568, 596
NdeII	GATC	2 cut(s)	59, 160
NgoMIV	GCCGGC	1 cut(s)	626
NlaIII	CATG	9 cut(s)	121, 220, 277, 349, 354, 389, 503, 544, 592
NlaIV	GGNNCC	5 cut(s)	115, 523, 586, 641, 663
NmeAIII	GCCGAG	1 cut(s)	191
NmuCI	GTSAC	3 cut(s)	262, 367, 488
NspI	RCATGY	2 cut(s)	354, 389
OliI	CACNNNNGTG	1 cut(s)	294
PaeI	GCATGC	1 cut(s)	354
PctI	GAATGC	1 cut(s)	605
PdiI	GCCGGC	1 cut(s)	628
PfeI	GAWTC	2 cut(s)	402, 731
PkrI	GCNGC	4 cut(s)	151, 229, 245, 679
PshBI	ATTAAT	1 cut(s)	768
Psp6I	CCWGG	2 cut(s)	525, 642
PspEI	GGTNACC	1 cut(s)	488
PspGI	CCWGG	2 cut(s)	525, 642
PspN4I	GGNNCC	5 cut(s)	115, 523, 586, 641, 663
PspPI	GGNCC	4 cut(s)	521, 569, 585, 662
PsuI	RGATCY	1 cut(s)	160
RsaI	GTAC	3 cut(s)	221, 470, 713
RsaNI	GTAC	3 cut(s)	220, 469, 712
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	768
SatI	GCNGC	4 cut(s)	150, 228, 244, 678
Sau3AI	GATC	2 cut(s)	59, 160
Sau96I	GGNCC	4 cut(s)	521, 569, 585, 662
ScrFI	CCNGG	5 cut(s)	257, 527, 568, 596, 644
SetI	ASST	5 cut(s)	89, 172, 237, 269, 398
SfaNI	GCATC	3 cut(s)	129, 136, 161
SinI	GGWCC	2 cut(s)	521, 585
SmiMI	CAYNNNNRTG	1 cut(s)	294
SphI	GCATGC	1 cut(s)	354
SsiI	CCGC	6 cut(s)	21, 243, 278, 647, 677, 680
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	5 cut(s)	255, 525, 566, 594, 642
TaaI	ACNGT	3 cut(s)	106, 376, 696
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	2 cut(s)	25, 764
TaqII	GACCGA	1 cut(s)	507
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	2 cut(s)	246, 680
TfiI	GAWTC	2 cut(s)	402, 731
Tru1I	TTAA	1 cut(s)	768
Tru9I	TTAA	1 cut(s)	768
TscAI	CASTG	3 cut(s)	109, 310, 412
TseFI	GTSAC	3 cut(s)	262, 367, 488
TseI	GCWGC	2 cut(s)	149, 227
Tsp45I	GTSAC	3 cut(s)	262, 367, 488
TspDTI	ATGAA	3 cut(s)	67, 529, 605
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	3 cut(s)	109, 310, 412
VpaK11BI	GGWCC	2 cut(s)	521, 585
VspI	ATTAAT	1 cut(s)	768
XceI	RCATGY	2 cut(s)	354, 389
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.