Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0016136

Physical Location & Seq

Genomic Coordinates Reverse (-)

32054429 .. 32055684

Gene Structure 1256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1253000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTTATTTGGATCAATGGCTAGAATTGCACTGACCGCTCGATTCCAGCAAGCTATCACTCCCAACGCCCTCCGATCTTATCTTGCAGAGTTCATCTCAACCTTCTTCTTTGTGTTCGCTGTTGTTGGCTCCATGATGTCGTCAAGGAAGTTGATGCCGGATGCAGCATCAGACCCAGCTAGTCTGGTGATGGTTGCCGTCGCCAACACCTTCGCATTGTCCTCGGCAGTGTACATTGCGGCCAACATCTCCGGCGGCCACATCAACCCGGCTGTCACCTTCGGCATGGCGGTCGGAGGACACATTAGCGTCCCCAATGCCATCTGCTACTGGATTTCCCAGATGGTGGCCTCTGTCATGGCTTGCCTTCTCTTGAGAGTCACTATTGTGGGACAGCATGTTCCGACGTACGGAATCACGGAAGAGATGACGGGTTTCGGGGCGTCGGTTTTGGAGGGCGTGCTGACATTTGGGCTGGTGTACACTGTTTATGCCGCCGGTGACCCAAGGAATGGTGCACTTGGGGGCATTGGACCCCTGGCAGTTGGGTTCATGGCAGGAGCCAATGTTTTAGCAACTGGGCCGTTCTCCGGTGGGTCCATGAACCCGGCTTGTGCATTCGGGTCGGCAGTCGTTGCCGGCAGTTTCAGGAACCAGGCGGTTTACTGGGTGGGGCCTCTGATTGGTGGGGCAGTTGCTGGACTACTGTATGATAATGTAGTGTACCCTGCCCAATCTTCTCCGGATCCTCTTACGGGAATTTCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009705 GO:0009987 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0019953 GO:0022412 GO:0022414 GO:0022803 GO:0022838 GO:0022857 GO:0030154 GO:0031090 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0042887 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0090406 GO:0098588 GO:0098805 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

257

Amino Acids

26.2

Weight (kDa)

6.24

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	21 - 237	3.8e-60	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47440
fragaria_vesca	FvH4_7g27390
malus_domestica	MD01G1182400.v1.1 MD07G1253000.v1.1
prunus_persica	Prupe.2G276600_v2.0.a1
pyrus_communis	pycom01g19240
rosa_chinensis	RchiOBHm_Chr1g0374221
rosa_laevigata	RLG00000026754
rosa_roxburghii	Rroxscaffold_4G00283630
rosa_rugosa	Rorug01G0381600
rosa_samantha	Rh1AG392500 Rh1BG356500 Rh1CG369500 Rh1DG387000
rosa_wichuraiana	Rw1G034320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	346, 512
AccBSI	CCGCTC	1 cut(s)	38
AccIII	TCCGGA	1 cut(s)	742
AciI	CCGC	6 cut(s)	36, 239, 255, 290, 495, 659
AclWI	GGATC	3 cut(s)	19, 740, 753
AcoI	YGGCCR	2 cut(s)	240, 256
AcsI	RAATTY	1 cut(s)	759
AcyI	GRCGYC	1 cut(s)	443
AfaI	GTAC	4 cut(s)	233, 410, 482, 725
AfiI	CCNNNNNNNGG	6 cut(s)	346, 410, 512, 590, 683, 755
AjnI	CCWGG	2 cut(s)	537, 654
AleI	CACNNNNGTG	1 cut(s)	386
AloI	GAACNNNNNNTCC	2 cut(s)	384, 416
AluBI	AGCT	2 cut(s)	53, 179
AluI	AGCT	2 cut(s)	53, 179
Alw21I	GWGCWC	1 cut(s)	520
Alw44I	GTGCAC	1 cut(s)	516
AlwI	GGATC	3 cut(s)	19, 740, 753
AlwNI	CAGNNNCTG	1 cut(s)	698
Aor13HI	TCCGGA	1 cut(s)	742
AoxI	GGCC	5 cut(s)	240, 256, 348, 581, 674
ApaLI	GTGCAC	1 cut(s)	516
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	759
AspS9I	GGNCC	4 cut(s)	533, 581, 597, 674
AsuC2I	CCSGG	2 cut(s)	269, 608
AsuHPI	GGTGA	3 cut(s)	199, 268, 512
AvaII	GGWCC	2 cut(s)	533, 597
BaeGI	GKGCMC	1 cut(s)	520
BamHI	GGATCC	1 cut(s)	745
Bbv12I	GWGCWC	1 cut(s)	520
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	3 cut(s)	184, 329, 337
BceAI	ACGGC	2 cut(s)	182, 568
BcgI	CGANNNNNNTGC	6 cut(s)	204, 238, 274, 308, 606, 640
BciT130I	CCWGG	2 cut(s)	539, 656
BcnI	CCSGG	2 cut(s)	269, 608
BfaI	CTAG	2 cut(s)	21, 180
BisI	GCNGC	4 cut(s)	165, 240, 256, 495
BlsI	GCNGC	4 cut(s)	166, 241, 257, 496
Bme1390I	CCNGG	4 cut(s)	269, 539, 608, 656
Bme18I	GGWCC	2 cut(s)	533, 597
BmgT120I	GGNCC	4 cut(s)	533, 581, 597, 674
BmiI	GGNNCC	7 cut(s)	130, 535, 562, 598, 653, 675, 747
BmrFI	CCNGG	4 cut(s)	269, 539, 608, 656
BmrI	ACTGGG	2 cut(s)	588, 676
BmsI	GCATC	3 cut(s)	144, 151, 176
BmuI	ACTGGG	2 cut(s)	588, 676
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BpuEI	CTTGAG	1 cut(s)	394
BpuMI	CCSGG	2 cut(s)	269, 608
BsaHI	GRCGYC	1 cut(s)	443
BsaJI	CCNNGG	3 cut(s)	222, 506, 537
BsaWI	WCCGGW	2 cut(s)	590, 742
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	6 cut(s)	346, 410, 512, 590, 683, 755
Bse118I	RCCGGY	2 cut(s)	497, 638
Bse1I	ACTGG	3 cut(s)	335, 583, 671
Bse3DI	GCAATG	1 cut(s)	234
BseAI	TCCGGA	1 cut(s)	742
BseBI	CCWGG	2 cut(s)	539, 656
BseDI	CCNNGG	3 cut(s)	222, 506, 537
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	6 cut(s)	346, 410, 512, 590, 683, 755
BseMI	GCAATG	1 cut(s)	234
BseNI	ACTGG	3 cut(s)	335, 583, 671
BseSI	GKGCMC	1 cut(s)	520
BseXI	GCAGC	1 cut(s)	176
BseYI	CCCAGC	1 cut(s)	175
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	5 cut(s)	242, 258, 350, 583, 676
BsiEI	CGRYCG	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	520
BsiSI	CCGG	8 cut(s)	158, 252, 269, 498, 591, 608, 639, 743
BsiWI	CGTACG	1 cut(s)	408
BslFI	GGGAC	2 cut(s)	296, 405
BslI	CCNNNNNNNGG	6 cut(s)	346, 410, 512, 590, 683, 755
BsmFI	GGGAC	2 cut(s)	296, 405
BsmI	GAATGC	1 cut(s)	617
BsnI	GGCC	5 cut(s)	242, 258, 350, 583, 676
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp13I	TCCGGA	1 cut(s)	742
Bsp1407I	TGTACA	2 cut(s)	231, 480
Bsp143I	GATC	3 cut(s)	11, 74, 745
BspACI	CCGC	6 cut(s)	36, 239, 255, 290, 495, 659
BspANI	GGCC	5 cut(s)	242, 258, 350, 583, 676
BspEI	TCCGGA	1 cut(s)	742
BspLI	GGNNCC	7 cut(s)	130, 535, 562, 598, 653, 675, 747
BspPI	GGATC	3 cut(s)	19, 740, 753
BsrBI	CCGCTC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	234
BsrFI	RCCGGY	2 cut(s)	497, 638
BsrGI	TGTACA	2 cut(s)	231, 480
BsrI	ACTGG	3 cut(s)	335, 583, 671
BssAI	RCCGGY	2 cut(s)	497, 638
BssECI	CCNNGG	3 cut(s)	222, 506, 537
BssMI	GATC	3 cut(s)	11, 74, 745
BssNI	GRCGYC	1 cut(s)	443
BssT1I	CCWWGG	1 cut(s)	506
Bst2UI	CCWGG	2 cut(s)	539, 656
Bst4CI	ACNGT	2 cut(s)	487, 708
Bst6I	CTCTTC	1 cut(s)	417
BstACI	GRCGYC	1 cut(s)	443
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstAUI	TGTACA	2 cut(s)	231, 480
BstC8I	GCNNGC	4 cut(s)	51, 364, 461, 640
BstEII	GGTNACC	1 cut(s)	500
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	3 cut(s)	14, 77, 748
BstMBI	GATC	3 cut(s)	11, 74, 745
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 35, 635
BstNI	CCWGG	2 cut(s)	539, 656
BstNSI	RCATGY	1 cut(s)	401
BstPI	GGTNACC	1 cut(s)	500
BstSCI	CCNGG	4 cut(s)	267, 537, 606, 654
BstSLI	GKGCMC	1 cut(s)	520
BstV1I	GCAGC	1 cut(s)	176
BstX2I	RGATCY	1 cut(s)	745
BstYI	RGATCY	1 cut(s)	745
BsuRI	GGCC	5 cut(s)	242, 258, 350, 583, 676
BtsCI	GGATG	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	3 cut(s)	29, 234, 483
Cac8I	GCNNGC	4 cut(s)	51, 364, 461, 640
CaiI	CAGNNNCTG	1 cut(s)	698
Cfr10I	RCCGGY	2 cut(s)	497, 638
Cfr13I	GGNCC	4 cut(s)	533, 581, 597, 674
CseI	GACGC	2 cut(s)	298, 432
Csp6I	GTAC	4 cut(s)	232, 409, 481, 724
CviAII	CATG	6 cut(s)	133, 286, 358, 398, 553, 601
CviQI	GTAC	4 cut(s)	232, 409, 481, 724
DpnI	GATC	3 cut(s)	13, 76, 747
DpnII	GATC	3 cut(s)	11, 74, 745
EaeI	YGGCCR	2 cut(s)	240, 256
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Eco130I	CCWWGG	1 cut(s)	506
Eco47I	GGWCC	2 cut(s)	533, 597
Eco91I	GGTNACC	1 cut(s)	500
EcoO109I	RGGNCCY	1 cut(s)	674
EcoO65I	GGTNACC	1 cut(s)	500
EcoRII	CCWGG	2 cut(s)	537, 654
EcoT14I	CCWWGG	1 cut(s)	506
ErhI	CCWWGG	1 cut(s)	506
FaeI	CATG	6 cut(s)	136, 289, 361, 401, 556, 604
FaiI	YATR	8 cut(s)	134, 287, 359, 399, 492, 554, 602, 711
FaqI	GGGAC	2 cut(s)	296, 405
FatI	CATG	6 cut(s)	132, 285, 357, 397, 552, 600
Fnu4HI	GCNGC	4 cut(s)	165, 240, 256, 495
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	4 cut(s)	165, 240, 256, 495
FspBI	CTAG	2 cut(s)	21, 180
GluI	GCNGC	4 cut(s)	165, 240, 256, 495
GsaI	CCCAGC	1 cut(s)	179
HaeIII	GGCC	5 cut(s)	242, 258, 350, 583, 676
HapII	CCGG	8 cut(s)	158, 252, 269, 498, 591, 608, 639, 743
HgaI	GACGC	2 cut(s)	298, 432
Hin1I	GRCGYC	1 cut(s)	443
Hin1II	CATG	6 cut(s)	136, 289, 361, 401, 556, 604
HinfI	GANTC	3 cut(s)	42, 378, 414
HpaII	CCGG	8 cut(s)	158, 252, 269, 498, 591, 608, 639, 743
HphI	GGTGA	3 cut(s)	199, 268, 512
Hpy166II	GTNNAC	6 cut(s)	232, 481, 483, 518, 664, 724
Hpy188I	TCNGA	5 cut(s)	74, 172, 296, 405, 681
Hpy188III	TCNNGA	3 cut(s)	373, 649, 743
Hpy8I	GTNNAC	6 cut(s)	232, 481, 483, 518, 664, 724
Hpy99I	CGWCG	3 cut(s)	203, 409, 448
HpyAV	CCTTC	4 cut(s)	112, 220, 289, 377
HpyCH4III	ACNGT	2 cut(s)	487, 708
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	5 cut(s)	29, 86, 164, 518, 617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 35, 635
HpySE526I	ACGT	1 cut(s)	407
Hsp92I	GRCGYC	1 cut(s)	443
Hsp92II	CATG	6 cut(s)	136, 289, 361, 401, 556, 604
Kpn2I	TCCGGA	1 cut(s)	742
KroI	GCCGGC	1 cut(s)	638
KroNI	GCCGGC	1 cut(s)	640
Kzo9I	GATC	3 cut(s)	11, 74, 745
LmnI	GCTCC	2 cut(s)	134, 560
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	3 cut(s)	144, 151, 176
MaeI	CTAG	2 cut(s)	21, 180
MaeII	ACGT	1 cut(s)	407
MaeIII	GTNAC	3 cut(s)	274, 379, 500
MalI	GATC	3 cut(s)	13, 76, 747
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	3 cut(s)	11, 74, 745
MboII	GAAGA	3 cut(s)	97, 434, 729
MflI	RGATCY	1 cut(s)	745
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	2 cut(s)	24, 759
MlyI	GAGTC	1 cut(s)	387
MmeI	TCCRAC	2 cut(s)	274, 428
MnlI	CCTC	7 cut(s)	80, 232, 290, 361, 448, 687, 759
MroI	TCCGGA	1 cut(s)	742
MroNI	GCCGGC	1 cut(s)	638
MslI	CAYNNNNRTG	1 cut(s)	386
MspI	CCGG	8 cut(s)	158, 252, 269, 498, 591, 608, 639, 743
MspR9I	CCNGG	4 cut(s)	269, 539, 608, 656
Mva1269I	GAATGC	1 cut(s)	617
MvaI	CCWGG	2 cut(s)	539, 656
MwoI	GCNNNNNNNGC	3 cut(s)	26, 35, 635
NaeI	GCCGGC	1 cut(s)	640
NciI	CCSGG	2 cut(s)	269, 608
NdeII	GATC	3 cut(s)	11, 74, 745
NgoMIV	GCCGGC	1 cut(s)	638
NlaIII	CATG	6 cut(s)	136, 289, 361, 401, 556, 604
NlaIV	GGNNCC	7 cut(s)	130, 535, 562, 598, 653, 675, 747
NmeAIII	GCCGAG	1 cut(s)	203
NmuCI	GTSAC	3 cut(s)	274, 379, 500
NspI	RCATGY	1 cut(s)	401
OliI	CACNNNNGTG	1 cut(s)	386
PctI	GAATGC	1 cut(s)	617
PdiI	GCCGGC	1 cut(s)	640
PfeI	GAWTC	2 cut(s)	42, 414
Pfl23II	CGTACG	1 cut(s)	408
PflMI	CCANNNNNTGG	2 cut(s)	346, 512
PkrI	GCNGC	4 cut(s)	166, 241, 257, 496
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
Psp6I	CCWGG	2 cut(s)	537, 654
PspEI	GGTNACC	1 cut(s)	500
PspFI	CCCAGC	1 cut(s)	175
PspGI	CCWGG	2 cut(s)	537, 654
PspLI	CGTACG	1 cut(s)	408
PspN4I	GGNNCC	7 cut(s)	130, 535, 562, 598, 653, 675, 747
PspPI	GGNCC	4 cut(s)	533, 581, 597, 674
PstNI	CAGNNNCTG	1 cut(s)	698
PsuI	RGATCY	1 cut(s)	745
RsaI	GTAC	4 cut(s)	233, 410, 482, 725
RsaNI	GTAC	4 cut(s)	232, 409, 481, 724
RseI	CAYNNNNRTG	1 cut(s)	386
SatI	GCNGC	4 cut(s)	165, 240, 256, 495
Sau3AI	GATC	3 cut(s)	11, 74, 745
Sau96I	GGNCC	4 cut(s)	533, 581, 597, 674
SchI	GAGTC	1 cut(s)	387
ScrFI	CCNGG	4 cut(s)	269, 539, 608, 656
SduI	GDGCHC	1 cut(s)	520
SetI	ASST	6 cut(s)	55, 104, 181, 212, 281, 410
SfaNI	GCATC	3 cut(s)	144, 151, 176
SgrAI	CRCCGGYG	1 cut(s)	497
SinI	GGWCC	2 cut(s)	533, 597
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
Sse9I	AATT	2 cut(s)	24, 759
SsiI	CCGC	6 cut(s)	36, 239, 255, 290, 495, 659
SspMI	CTAG	2 cut(s)	21, 180
StyD4I	CCNGG	4 cut(s)	267, 537, 606, 654
StyI	CCWWGG	1 cut(s)	506
TaaI	ACNGT	2 cut(s)	487, 708
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	1 cut(s)	40
TasI	AATT	2 cut(s)	24, 759
TatI	WGTACW	2 cut(s)	231, 480
TauI	GCSGC	3 cut(s)	242, 258, 497
TfiI	GAWTC	2 cut(s)	42, 414
TscAI	CASTG	3 cut(s)	36, 234, 490
TseFI	GTSAC	3 cut(s)	274, 379, 500
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	3 cut(s)	274, 379, 500
TspDTI	ATGAA	3 cut(s)	82, 541, 617
TspGWI	ACGGA	2 cut(s)	426, 434
TspRI	CASTG	3 cut(s)	36, 234, 490
Van91I	CCANNNNNTGG	2 cut(s)	346, 512
VneI	GTGCAC	1 cut(s)	516
VpaK11BI	GGWCC	2 cut(s)	533, 597
XapI	RAATTY	1 cut(s)	759
XceI	RCATGY	1 cut(s)	401
XspI	CTAG	2 cut(s)	21, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.