Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0016136

Physical Location & Seq

Genomic Coordinates Forward (+)

49404535 .. 49404951

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0381600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCTATTCAAGGTAGTTGCATTTCATGGCTAAACAGTCAAGCACCAAAATCTGTTGTCTATGTTAGCTTTGGGAGCATTGCCGCAATAAATGAAGCTCAATTTTTGGAAATAGCTTGGGGACTAGCCAACACCAATCAGCCCTTCTTGTGGGTGGTTCGACCTGGATTAATCCAAGGCTCTGAATGGCTCGAAAAATTACCTCAAGGGTACCTGGAGGCTTTAAATGAGAAAGGTCACACTGTGAAATTGGCACCACAGAAAAAGGTGCTGGCTCATCCAGCTGTGGGACTGTTCTGGACTCACAATGGGTGGAATTCAACATTGGAGAGTATATCTGAGGGGGTGCCGCAGTGCGCCTATGATCTGTATGCCAAATTCCACCGATCAAATGGTAAATGCAACATATGTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003006 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009705 GO:0009987 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0019953 GO:0022412 GO:0022414 GO:0022803 GO:0022838 GO:0022857 GO:0030154 GO:0031090 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0042887 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051704 GO:0055046 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0090406 GO:0098588 GO:0098805 GO:0120025

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

138

Amino Acids

15.26

Weight (kDa)

8.37

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	10 - 126	8.1e-18	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47440
fragaria_vesca	FvH4_7g27390
malus_domestica	MD01G1182400.v1.1 MD07G1253000.v1.1
prunus_persica	Prupe.2G276600_v2.0.a1
pyrus_communis	pycom01g19240
rosa_chinensis	RchiOBHm_Chr1g0374221
rosa_laevigata	RLG00000026754
rosa_roxburghii	Rroxscaffold_4G00283630
rosa_rugosa	Rorug01G0381600
rosa_samantha	Rh1AG392500 Rh1BG356500 Rh1CG369500 Rh1DG387000
rosa_wichuraiana	Rw1G034320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	210
AccB1I	GGYRCC	3 cut(s)	210, 253, 346
AciI	CCGC	2 cut(s)	84, 350
AcsI	RAATTY	2 cut(s)	316, 377
AdeI	CACNNNGTG	1 cut(s)	244
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	150, 287
AgsI	TTSAA	2 cut(s)	11, 321
AjnI	CCWGG	2 cut(s)	163, 213
AjuI	GAANNNNNNNTTGG	4 cut(s)	128, 160, 308, 340
AluBI	AGCT	4 cut(s)	69, 98, 116, 284
AluI	AGCT	4 cut(s)	69, 98, 116, 284
ApoI	RAATTY	2 cut(s)	316, 377
AseI	ATTAAT	1 cut(s)	170
Asp718I	GGTACC	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	359
BanI	GGYRCC	3 cut(s)	210, 253, 346
BciT130I	CCWGG	2 cut(s)	165, 215
BfaI	CTAG	1 cut(s)	125
BisI	GCNGC	2 cut(s)	84, 350
BlsI	GCNGC	2 cut(s)	85, 351
Bme1390I	CCNGG	2 cut(s)	165, 215
BmiI	GGNNCC	3 cut(s)	212, 255, 348
BmrFI	CCNGG	2 cut(s)	165, 215
BpmI	CTGGAG	1 cut(s)	236
BpuEI	CTTGAG	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 287
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	2 cut(s)	165, 215
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	2 cut(s)	150, 287
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	330
BshNI	GGYRCC	3 cut(s)	210, 253, 346
BslFI	GGGAC	2 cut(s)	135, 303
BslI	CCNNNNNNNGG	2 cut(s)	150, 287
BsmFI	GGGAC	2 cut(s)	135, 303
Bsp143I	GATC	2 cut(s)	364, 386
BspACI	CCGC	2 cut(s)	84, 350
BspCNI	CTCAG	1 cut(s)	331
BspLI	GGNNCC	3 cut(s)	212, 255, 348
BspT107I	GGYRCC	3 cut(s)	210, 253, 346
BsrDI	GCAATG	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	2 cut(s)	364, 386
BssT1I	CCWWGG	1 cut(s)	175
Bst2UI	CCWGG	2 cut(s)	165, 215
Bst4CI	ACNGT	3 cut(s)	38, 244, 294
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	2 cut(s)	367, 389
BstMBI	GATC	2 cut(s)	364, 386
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 281
BstNI	CCWGG	2 cut(s)	165, 215
BstSCI	CCNGG	2 cut(s)	163, 213
BtsCI	GGATG	1 cut(s)	277
BtsI	GCAGTG	1 cut(s)	359
BtsIMutI	CAGTG	2 cut(s)	240, 359
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	1 cut(s)	27
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	2 cut(s)	366, 388
DpnII	GATC	2 cut(s)	364, 386
DraI	TTTAAA	1 cut(s)	225
DraIII	CACNNNGTG	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	175
EcoRI	GAATTC	1 cut(s)	316
EcoRII	CCWGG	2 cut(s)	163, 213
EcoT14I	CCWWGG	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	1 cut(s)	30
FaiI	YATR	7 cut(s)	28, 63, 335, 363, 372, 407, 409
FaqI	GGGAC	2 cut(s)	135, 303
FatI	CATG	1 cut(s)	26
FauNDI	CATATG	1 cut(s)	407
Fnu4HI	GCNGC	2 cut(s)	84, 350
FokI	GGATG	1 cut(s)	264
Fsp4HI	GCNGC	2 cut(s)	84, 350
FspBI	CTAG	1 cut(s)	125
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	2 cut(s)	84, 350
GsuI	CTGGAG	1 cut(s)	236
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	1 cut(s)	30
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HinfI	GANTC	1 cut(s)	301
Hpy188I	TCNGA	2 cut(s)	184, 340
Hpy188III	TCNNGA	1 cut(s)	298
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	3 cut(s)	38, 244, 294
HpyCH4V	TGCA	2 cut(s)	21, 402
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 281
HpyF3I	CTNAG	1 cut(s)	339
Hsp92II	CATG	1 cut(s)	30
HspAI	GCGC	1 cut(s)	357
KpnI	GGTACC	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	364, 386
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	7 cut(s)	150, 177, 200, 227, 257, 283, 294
MaeI	CTAG	1 cut(s)	125
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	2 cut(s)	366, 388
MboI	GATC	2 cut(s)	364, 386
MluCI	AATT	5 cut(s)	101, 197, 248, 316, 377
MlyI	GAGTC	1 cut(s)	295
MnlI	CCTC	3 cut(s)	211, 213, 334
MseI	TTAA	2 cut(s)	170, 224
MspA1I	CMGCKG	1 cut(s)	284
MspR9I	CCNGG	2 cut(s)	165, 215
MvaI	CCWGG	2 cut(s)	165, 215
MwoI	GCNNNNNNNGC	2 cut(s)	75, 281
NdeI	CATATG	1 cut(s)	407
NdeII	GATC	2 cut(s)	364, 386
NlaIII	CATG	1 cut(s)	30
NlaIV	GGNNCC	3 cut(s)	212, 255, 348
NmuCI	GTSAC	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	85, 351
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
PshBI	ATTAAT	1 cut(s)	170
Psp6I	CCWGG	2 cut(s)	163, 213
PspGI	CCWGG	2 cut(s)	163, 213
PspN4I	GGNNCC	3 cut(s)	212, 255, 348
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SaqAI	TTAA	2 cut(s)	170, 224
SatI	GCNGC	2 cut(s)	84, 350
Sau3AI	GATC	2 cut(s)	364, 386
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	2 cut(s)	165, 215
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	5 cut(s)	101, 197, 248, 316, 377
SsiI	CCGC	2 cut(s)	84, 350
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	2 cut(s)	163, 213
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	3 cut(s)	38, 244, 294
TaqI	TCGA	2 cut(s)	160, 192
TasI	AATT	5 cut(s)	101, 197, 248, 316, 377
TauI	GCSGC	2 cut(s)	86, 352
Tru1I	TTAA	2 cut(s)	170, 224
Tru9I	TTAA	2 cut(s)	170, 224
TscAI	CASTG	2 cut(s)	247, 359
TseFI	GTSAC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	15, 108
TspRI	CASTG	2 cut(s)	247, 359
VspI	ATTAAT	1 cut(s)	170
XapI	RAATTY	2 cut(s)	316, 377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	389
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.