AT3G47470

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014422
Physical Location & Seq
Reverse (-)
17493343 .. 17495033
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47470.1

Sequence Viewer

Length: 756 bp
ATGGCTACTGTCACTACTCATGCCTCGGCCTCGATTTTCCGACCTTGTACTTCAAAGCCAAGATTCCTCACCGGTTCTTCCGGTAGGTTGAACCGCGACTTGTCGTTTACATCGATCGGTTCATCGGCCAAAACGTCGTCGTTCAAGGTTGAAGCTAAGAAAGGAGAATGGTTGCCCGGTTTGGCATCGCCTGATTATCTCACCGGCAGTCTTGCCGGTGACAATGGGTTTGACCCGTTGGGTCTAGCAGAGGATCCAGAGAACTTGAAATGGTTCGTCCAGGCAGAGCTGGTCAACGGACGATGGGCTATGCTCGGTGTCGCTGGGATGCTTTTGCCGGAAGTTTTCACCAAGATCGGAATCATAAATGTTCCTGAGTGGTACGATGCTGGGAAAGAGCAGTATTTTGCATCGTCGTCGACATTGTTCGTGATCGAGTTCATATTGTTTCATTACGTTGAGATCAGACGGTGGCAAGACATCAAGAACCCAGGAAGTGTGAACCAAGACCCTATCTTTAAGCAATACAGCTTACCTAAGGGTGAAGTTGGTTACCCTGGTGGAATCTTTAACCCGCTTAACTTTGCTCCTACGCAAGAGGCCAAGGAGAAAGAGCTAGCAAACGGGAGGTTGGCGATGTTGGCATTCTTAGGGTTTGTGGTTCAACACAATGTGACTGGAAAAGGACCATTTGAGAATCTGTTGCAGCACTTGTCTGACCCATGGCACAACACTATTGTCCAAACCTTCAACTAA

Protein Analysis

251

Amino Acids

27.73

Weight (kDa)

6.22

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 64 - 223 3.8e-48 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47470
fragaria_vesca FvH4_5g14770
malus_domestica MD06G1195000.v1.1 MD14G1202000.v1.1
prunus_persica Prupe.5G195100_v2.0.a1
pyrus_communis pycom06g17250 pycom14g16730
rosa_chinensis RchiOBHm_Chr7g0181611
rosa_laevigata RLG00000005179
rosa_multiflora Rmu_sc0000988.1_g000017
rosa_roxburghii Rroxscaffold_3G00271850
rosa_rugosa Rorug06G0442500
rosa_samantha Rh7AG044900 Rh7BG043900 Rh7CG045600 Rh7DG044500
rosa_wichuraiana Rw7G003730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 419
AccII CGCG 1 cut(s) 96
AciI CCGC 2 cut(s) 94, 575
AclWI GGATC 2 cut(s) 248, 261
AcoI YGGCCR 1 cut(s) 126
AdeI CACNNNGTG 1 cut(s) 673
AfaI GTAC 2 cut(s) 49, 383
AgeI ACCGGT 1 cut(s) 71
AgsI TTSAA 7 cut(s) 54, 91, 145, 152, 268, 665, 751
AjnI CCWGG 3 cut(s) 279, 490, 556
AluBI AGCT 4 cut(s) 155, 289, 531, 616
AluI AGCT 4 cut(s) 155, 289, 531, 616
AlwI GGATC 2 cut(s) 248, 261
AoxI GGCC 3 cut(s) 27, 126, 600
ApeKI GCWGC 1 cut(s) 706
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AsiGI ACCGGT 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 686
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 5 cut(s) 61, 193, 230, 340, 554
AsuNHI GCTAGC 1 cut(s) 616
AvaII GGWCC 1 cut(s) 686
AxyI CCTNAGG 1 cut(s) 537
BamHI GGATCC 1 cut(s) 253
BbvI GCAGC 1 cut(s) 718
BccI CCATC 1 cut(s) 297
BcgI CGANNNNNNTGC 2 cut(s) 399, 433
BciT130I CCWGG 3 cut(s) 281, 492, 558
BcnI CCSGG 1 cut(s) 177
BfaI CTAG 2 cut(s) 245, 617
BisI GCNGC 1 cut(s) 707
BlsI GCNGC 1 cut(s) 708
Bme1390I CCNGG 4 cut(s) 177, 281, 492, 558
Bme18I GGWCC 1 cut(s) 686
BmgT120I GGNCC 1 cut(s) 686
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 4 cut(s) 177, 281, 492, 558
BmsI GCATC 4 cut(s) 194, 318, 376, 419
BmtI GCTAGC 1 cut(s) 620
BpuMI CCSGG 1 cut(s) 177
Bsa29I ATCGAT 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 359
BsaJI CCNNGG 5 cut(s) 24, 490, 556, 603, 722
BsaWI WCCGGW 2 cut(s) 71, 80
Bse118I RCCGGY 3 cut(s) 71, 203, 215
Bse1I ACTGG 1 cut(s) 682
Bse21I CCTNAGG 1 cut(s) 537
Bse8I GATNNNNATC 1 cut(s) 359
BseBI CCWGG 3 cut(s) 281, 492, 558
BseCI ATCGAT 1 cut(s) 113
BseDI CCNNGG 5 cut(s) 24, 490, 556, 603, 722
BseGI GGATG 1 cut(s) 333
BseJI GATNNNNATC 1 cut(s) 359
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 1 cut(s) 682
BseXI GCAGC 1 cut(s) 718
BseYI CCCAGC 2 cut(s) 323, 389
Bsh1236I CGCG 1 cut(s) 96
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 3 cut(s) 29, 128, 602
BshTI ACCGGT 1 cut(s) 71
BshVI ATCGAT 1 cut(s) 113
BsiEI CGRYCG 1 cut(s) 117
BsiSI CCGG 6 cut(s) 72, 81, 177, 204, 216, 338
BsmI GAATGC 1 cut(s) 644
BsnI GGCC 3 cut(s) 29, 128, 602
Bsp143I GATC 5 cut(s) 114, 253, 354, 432, 462
Bsp19I CCATGG 1 cut(s) 722
BspACI CCGC 2 cut(s) 94, 575
BspANI GGCC 3 cut(s) 29, 128, 602
BspCNI CTCAG 1 cut(s) 367
BspDI ATCGAT 1 cut(s) 113
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 255
BspOI GCTAGC 1 cut(s) 620
BspPI GGATC 2 cut(s) 248, 261
BsrFI RCCGGY 3 cut(s) 71, 203, 215
BsrI ACTGG 1 cut(s) 682
BssAI RCCGGY 3 cut(s) 71, 203, 215
BssECI CCNNGG 5 cut(s) 24, 490, 556, 603, 722
BssMI GATC 5 cut(s) 114, 253, 354, 432, 462
BssT1I CCWWGG 2 cut(s) 603, 722
Bst2UI CCWGG 3 cut(s) 281, 492, 558
Bst4CI ACNGT 2 cut(s) 10, 471
BstC8I GCNNGC 1 cut(s) 618
BstDEI CTNAG 4 cut(s) 156, 375, 537, 649
BstDSI CCRYGG 1 cut(s) 722
BstEII GGTNACC 1 cut(s) 551
BstF5I GGATG 1 cut(s) 333
BstFNI CGCG 1 cut(s) 96
BstKTI GATC 5 cut(s) 117, 256, 357, 435, 465
BstMBI GATC 5 cut(s) 114, 253, 354, 432, 462
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 641
BstNI CCWGG 3 cut(s) 281, 492, 558
BstPI GGTNACC 1 cut(s) 551
BstSCI CCNGG 4 cut(s) 175, 279, 490, 556
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 718
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
Bsu15I ATCGAT 1 cut(s) 113
Bsu36I CCTNAGG 1 cut(s) 537
BsuRI GGCC 3 cut(s) 29, 128, 602
BsuTUI ATCGAT 1 cut(s) 113
BtgI CCRYGG 1 cut(s) 722
BtgZI GCGATG 2 cut(s) 171, 650
BtsCI GGATG 1 cut(s) 333
Cac8I GCNNGC 1 cut(s) 618
Cfr10I RCCGGY 3 cut(s) 71, 203, 215
Cfr13I GGNCC 1 cut(s) 686
ClaI ATCGAT 1 cut(s) 113
Csp6I GTAC 2 cut(s) 48, 382
CspAI ACCGGT 1 cut(s) 71
CviAII CATG 2 cut(s) 20, 723
CviQI GTAC 2 cut(s) 48, 382
DdeI CTNAG 4 cut(s) 156, 375, 537, 649
DpnI GATC 5 cut(s) 116, 255, 356, 434, 464
DpnII GATC 5 cut(s) 114, 253, 354, 432, 462
DraIII CACNNNGTG 1 cut(s) 673
EaeI YGGCCR 1 cut(s) 126
Eco130I CCWWGG 2 cut(s) 603, 722
Eco47I GGWCC 1 cut(s) 686
Eco81I CCTNAGG 1 cut(s) 537
Eco91I GGTNACC 1 cut(s) 551
EcoO65I GGTNACC 1 cut(s) 551
EcoRII CCWGG 3 cut(s) 279, 490, 556
EcoT14I CCWWGG 2 cut(s) 603, 722
ErhI CCWWGG 2 cut(s) 603, 722
FaeI CATG 2 cut(s) 23, 726
FaiI YATR 5 cut(s) 21, 311, 365, 443, 724
FatI CATG 2 cut(s) 19, 722
FauI CCCGC 1 cut(s) 582
FblI GTMKAC 1 cut(s) 419
Fnu4HI GCNGC 1 cut(s) 707
FokI GGATG 1 cut(s) 340
Fsp4HI GCNGC 1 cut(s) 707
FspBI CTAG 2 cut(s) 245, 617
GluI GCNGC 1 cut(s) 707
GsaI CCCAGC 2 cut(s) 327, 393
HaeIII GGCC 3 cut(s) 29, 128, 602
HapII CCGG 6 cut(s) 72, 81, 177, 204, 216, 338
Hin1II CATG 2 cut(s) 23, 726
HincII GTYRAC 2 cut(s) 295, 420
HindII GTYRAC 2 cut(s) 295, 420
HinfI GANTC 4 cut(s) 63, 360, 564, 697
HpaII CCGG 6 cut(s) 72, 81, 177, 204, 216, 338
HphI GGTGA 5 cut(s) 61, 193, 230, 340, 554
Hpy166II GTNNAC 4 cut(s) 108, 295, 420, 502
Hpy188I TCNGA 4 cut(s) 41, 359, 467, 718
Hpy188III TCNNGA 4 cut(s) 257, 374, 430, 484
Hpy8I GTNNAC 4 cut(s) 108, 295, 420, 502
Hpy99I CGWCG 4 cut(s) 139, 142, 418, 421
HpyCH4III ACNGT 2 cut(s) 10, 471
HpyCH4IV ACGT 2 cut(s) 134, 456
HpyCH4V TGCA 2 cut(s) 410, 706
HpyF10VI GCNNNNNNNGC 1 cut(s) 641
HpyF3I CTNAG 4 cut(s) 156, 375, 537, 649
HpySE526I ACGT 2 cut(s) 134, 456
Hsp92II CATG 2 cut(s) 23, 726
Kzo9I GATC 5 cut(s) 114, 253, 354, 432, 462
LmnI GCTCC 1 cut(s) 592
Lsp1109I GCAGC 1 cut(s) 718
LweI GCATC 4 cut(s) 194, 318, 376, 419
MaeI CTAG 2 cut(s) 245, 617
MaeII ACGT 2 cut(s) 134, 456
MaeIII GTNAC 4 cut(s) 10, 218, 551, 673
MalI GATC 5 cut(s) 116, 255, 356, 434, 464
MboI GATC 5 cut(s) 114, 253, 354, 432, 462
MboII GAAGA 1 cut(s) 69
MflI RGATCY 1 cut(s) 253
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 6 cut(s) 34, 40, 77, 244, 592, 621
MroXI GAANNNNTTC 1 cut(s) 272
MseI TTAA 3 cut(s) 519, 570, 579
MspI CCGG 6 cut(s) 72, 81, 177, 204, 216, 338
MspR9I CCNGG 4 cut(s) 177, 281, 492, 558
Mva1269I GAATGC 1 cut(s) 644
MvaI CCWGG 3 cut(s) 281, 492, 558
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 1 cut(s) 641
NciI CCSGG 1 cut(s) 177
NcoI CCATGG 1 cut(s) 722
NdeII GATC 5 cut(s) 114, 253, 354, 432, 462
NheI GCTAGC 1 cut(s) 616
NlaIII CATG 2 cut(s) 23, 726
NlaIV GGNNCC 1 cut(s) 255
NmeAIII GCCGAG 1 cut(s) 5
NmuCI GTSAC 3 cut(s) 10, 218, 673
PcsI WCGNNNNNNNCGW 2 cut(s) 110, 131
PctI GAATGC 1 cut(s) 644
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 4 cut(s) 63, 360, 564, 697
PinAI ACCGGT 1 cut(s) 71
PkrI GCNGC 1 cut(s) 708
Ple19I CGATCG 1 cut(s) 117
Psp6I CCWGG 3 cut(s) 279, 490, 556
PspEI GGTNACC 1 cut(s) 551
PspFI CCCAGC 2 cut(s) 323, 389
PspGI CCWGG 3 cut(s) 279, 490, 556
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 1 cut(s) 686
PsuI RGATCY 1 cut(s) 253
PvuI CGATCG 1 cut(s) 117
RsaI GTAC 2 cut(s) 49, 383
RsaNI GTAC 2 cut(s) 48, 382
SalI GTCGAC 1 cut(s) 418
SaqAI TTAA 3 cut(s) 519, 570, 579
SatI GCNGC 1 cut(s) 707
Sau3AI GATC 5 cut(s) 114, 253, 354, 432, 462
Sau96I GGNCC 1 cut(s) 686
ScrFI CCNGG 4 cut(s) 177, 281, 492, 558
SfaNI GCATC 4 cut(s) 194, 318, 376, 419
SinI GGWCC 1 cut(s) 686
SsiI CCGC 2 cut(s) 94, 575
SspMI CTAG 2 cut(s) 245, 617
StyD4I CCNGG 4 cut(s) 175, 279, 490, 556
StyI CCWWGG 2 cut(s) 603, 722
TaaI ACNGT 2 cut(s) 10, 471
TaiI ACGT 2 cut(s) 137, 459
TaqI TCGA 4 cut(s) 32, 113, 419, 435
TatI WGTACW 1 cut(s) 47
TfiI GAWTC 4 cut(s) 63, 360, 564, 697
Tru1I TTAA 3 cut(s) 519, 570, 579
Tru9I TTAA 3 cut(s) 519, 570, 579
TseFI GTSAC 3 cut(s) 10, 218, 673
TseI GCWGC 1 cut(s) 706
Tsp45I GTSAC 3 cut(s) 10, 218, 673
TspDTI ATGAA 3 cut(s) 111, 430, 440
TspGWI ACGGA 1 cut(s) 312
VpaK11BI GGWCC 1 cut(s) 686
XmiI GTMKAC 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 2 cut(s) 245, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.