MD06G1195000.v1.1

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0014422
Physical Location & Seq
Reverse (-)
32950773 .. 32952478
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1195000.v1.1.491

Sequence Viewer

Length: 762 bp
ATGGCAACAGTCACAACTCAGGCCTCGGCCGCCATTTTCCGGCCATGCGTCAACTCGAAATCGAGGTTCCTTTCGGGTTCTTCTAGTAAGTTAAATAGGGAAGTGGCTTTTAGGCCTATGGCTTCTCCTCCTGCTTCTTCTTTTAAAGTTGAGGCTAAGAAGGGTGAGTGGTTACCTGGCTTGCCTTCACCAGACTACCTCACCGGCAGCCTTCCTGGTGACAATGGATTTGATCCTCTGGCACTTGCTGAGGACCCAGAGAACTTAAGGTGGTATATCCAAGCTGAGCTTGTCAATGGCAGATGGGCAATGTTGGGCGTTGTTGGGATGCTATTGCCTGAAGTGTTCACCAGCATTGGGATCCTTAACGTTCCCAAATGGTATGATGCCGGAAAGGCCGAGTACTTCGCTTCTTCGTCCACCCTCTTCGTGATCGAGTTCATCTTGTTCCACTACGTCGAGATCAGACGGTGGCAAGACATCAAGAACCCGGGAAGTGTGAACCAAGACCCCATCTTCAAGCAATACAGCTTGCCCCCAGGTGAGGTGGGCTACCCAGGTGGCATCTTCAACCCCCTCAACTTCGAACCCACTCTCGAGGCCAAGGAGAAGGAACTTGCCAATGGGAGACTGGCAATGTTGGCCTTCCTCGGGTTTGTGGTTCAACACAATGTGACCGGAAAGGGGCCGTTCGACAACCTGTTGCAGCACCTCTCAGATCCATGGCACAACACCATTGTCCAAACCCTAAGCGGCTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00196 map00196
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

254

Amino Acids

27.89

Weight (kDa)

5.84

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 64 - 223 1.5e-46 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47470
fragaria_vesca FvH4_5g14770
malus_domestica MD06G1195000.v1.1 MD14G1202000.v1.1
prunus_persica Prupe.5G195100_v2.0.a1
pyrus_communis pycom06g17250 pycom14g16730
rosa_chinensis RchiOBHm_Chr7g0181611
rosa_laevigata RLG00000005179
rosa_multiflora Rmu_sc0000988.1_g000017
rosa_roxburghii Rroxscaffold_3G00271850
rosa_rugosa Rorug06G0442500
rosa_samantha Rh7AG044900 Rh7BG043900 Rh7CG045600 Rh7DG044500
rosa_wichuraiana Rw7G003730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 30, 753
AclI AACGTT 1 cut(s) 369
AclWI GGATC 4 cut(s) 227, 355, 368, 713
AcoI YGGCCR 2 cut(s) 27, 41
AcuI CTGAAG 1 cut(s) 360
AdeI CACNNNGTG 1 cut(s) 673
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 5 cut(s) 39, 357, 544, 651, 684
AflII CTTAAG 1 cut(s) 265
AgsI TTSAA 3 cut(s) 520, 571, 665
AjnI CCWGG 4 cut(s) 175, 214, 538, 556
AluBI AGCT 3 cut(s) 284, 289, 531
AluI AGCT 3 cut(s) 284, 289, 531
Alw26I GTCTC 1 cut(s) 622
AlwI GGATC 4 cut(s) 227, 355, 368, 713
Ama87I CYCGRG 3 cut(s) 490, 596, 650
AoxI GGCC 8 cut(s) 21, 27, 41, 113, 396, 600, 642, 686
ApeKI GCWGC 2 cut(s) 207, 706
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AspS9I GGNCC 2 cut(s) 253, 686
AsuC2I CCSGG 2 cut(s) 491, 492
AsuHPI GGTGA 6 cut(s) 176, 180, 193, 230, 340, 554
AsuII TTCGAA 1 cut(s) 585
AvaI CYCGRG 3 cut(s) 490, 596, 650
AvaII GGWCC 1 cut(s) 253
BamHI GGATCC 1 cut(s) 360
BbvCI CCTCAGC 1 cut(s) 249
BbvI GCAGC 2 cut(s) 219, 718
BccI CCATC 2 cut(s) 297, 521
BceAI ACGGC 1 cut(s) 673
BciT130I CCWGG 4 cut(s) 177, 216, 540, 558
BcnI CCSGG 2 cut(s) 491, 492
BcoDI GTCTC 1 cut(s) 622
BfaI CTAG 2 cut(s) 84, 760
BfrI CTTAAG 1 cut(s) 265
BglI GCCNNNNNGGC 1 cut(s) 395
BisI GCNGC 4 cut(s) 30, 208, 707, 754
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 4 cut(s) 31, 209, 708, 755
BmcAI AGTACT 1 cut(s) 404
Bme1390I CCNGG 6 cut(s) 177, 216, 491, 492, 540, 558
Bme18I GGWCC 1 cut(s) 253
BmeT110I CYCGRG 3 cut(s) 490, 596, 650
BmgT120I GGNCC 2 cut(s) 253, 686
BmiI GGNNCC 5 cut(s) 68, 255, 362, 687, 757
BmrFI CCNGG 6 cut(s) 177, 216, 491, 492, 540, 558
BmsI GCATC 3 cut(s) 318, 376, 573
Bpu10I CCTNAGC 2 cut(s) 249, 749
Bpu1102I GCTNAGC 1 cut(s) 285
Bpu14I TTCGAA 1 cut(s) 585
BpuMI CCSGG 2 cut(s) 491, 492
BsaJI CCNNGG 7 cut(s) 24, 490, 538, 556, 603, 649, 722
BsaWI WCCGGW 1 cut(s) 677
Bsc4I CCNNNNNNNGG 5 cut(s) 39, 357, 544, 651, 684
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 636
Bse3DI GCAATG 2 cut(s) 315, 642
BseBI CCWGG 4 cut(s) 177, 216, 540, 558
BseDI CCNNGG 7 cut(s) 24, 490, 538, 556, 603, 649, 722
BseGI GGATG 1 cut(s) 333
BseLI CCNNNNNNNGG 5 cut(s) 39, 357, 544, 651, 684
BseMI GCAATG 2 cut(s) 315, 642
BseMII CTCAG 4 cut(s) 32, 240, 276, 729
BseNI ACTGG 1 cut(s) 636
BseRI GAGGAG 1 cut(s) 117
BseX3I CGGCCG 1 cut(s) 27
BseXI GCAGC 2 cut(s) 219, 718
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 8 cut(s) 23, 29, 43, 115, 398, 602, 644, 688
BsiEI CGRYCG 1 cut(s) 30
BsiHKCI CYCGRG 3 cut(s) 490, 596, 650
BsiSI CCGG 5 cut(s) 40, 204, 390, 491, 678
BslI CCNNNNNNNGG 5 cut(s) 39, 357, 544, 651, 684
BsmAI GTCTC 1 cut(s) 622
BsnI GGCC 8 cut(s) 23, 29, 43, 115, 398, 602, 644, 688
BsoBI CYCGRG 3 cut(s) 490, 596, 650
Bsp119I TTCGAA 1 cut(s) 585
Bsp143I GATC 5 cut(s) 232, 360, 432, 462, 718
Bsp1720I GCTNAGC 1 cut(s) 285
Bsp19I CCATGG 1 cut(s) 722
BspACI CCGC 2 cut(s) 30, 753
BspANI GGCC 8 cut(s) 23, 29, 43, 115, 398, 602, 644, 688
BspCNI CTCAG 4 cut(s) 31, 241, 277, 728
BspLI GGNNCC 5 cut(s) 68, 255, 362, 687, 757
BspPI GGATC 4 cut(s) 227, 355, 368, 713
BspT104I TTCGAA 1 cut(s) 585
BspTI CTTAAG 1 cut(s) 265
BsrDI GCAATG 2 cut(s) 315, 642
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 636
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 7 cut(s) 24, 490, 538, 556, 603, 649, 722
BssMI GATC 5 cut(s) 232, 360, 432, 462, 718
BssT1I CCWWGG 2 cut(s) 603, 722
Bst2UI CCWGG 4 cut(s) 177, 216, 540, 558
Bst4CI ACNGT 2 cut(s) 10, 471
Bst6I CTCTTC 1 cut(s) 431
BstAFI CTTAAG 1 cut(s) 265
BstBI TTCGAA 1 cut(s) 585
BstC8I GCNNGC 2 cut(s) 182, 533
BstDEI CTNAG 6 cut(s) 18, 156, 249, 285, 715, 749
BstDSI CCRYGG 1 cut(s) 722
BstEII GGTNACC 1 cut(s) 171
BstF5I GGATG 1 cut(s) 333
BstKTI GATC 5 cut(s) 235, 363, 435, 465, 721
BstMAI GTCTC 1 cut(s) 622
BstMBI GATC 5 cut(s) 232, 360, 432, 462, 718
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 3 cut(s) 29, 395, 641
BstNI CCWGG 4 cut(s) 177, 216, 540, 558
BstPI GGTNACC 1 cut(s) 171
BstSCI CCNGG 6 cut(s) 175, 214, 489, 490, 538, 556
BstV1I GCAGC 2 cut(s) 219, 718
BstX2I RGATCY 2 cut(s) 360, 718
BstYI RGATCY 2 cut(s) 360, 718
BstZI CGGCCG 1 cut(s) 27
BsuRI GGCC 8 cut(s) 23, 29, 43, 115, 398, 602, 644, 688
BtgI CCRYGG 1 cut(s) 722
BtsCI GGATG 1 cut(s) 333
Cac8I GCNNGC 2 cut(s) 182, 533
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 253, 686
Cfr9I CCCGGG 1 cut(s) 490
CseI GACGC 1 cut(s) 37
Csp6I GTAC 1 cut(s) 403
CviAII CATG 2 cut(s) 45, 723
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 6 cut(s) 18, 156, 249, 285, 715, 749
DpnI GATC 5 cut(s) 234, 362, 434, 464, 720
DpnII GATC 5 cut(s) 232, 360, 432, 462, 718
DraI TTTAAA 1 cut(s) 145
DraIII CACNNNGTG 1 cut(s) 673
EaeI YGGCCR 2 cut(s) 27, 41
EagI CGGCCG 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 431
EarI CTCTTC 1 cut(s) 431
EclXI CGGCCG 1 cut(s) 27
Eco130I CCWWGG 2 cut(s) 603, 722
Eco147I AGGCCT 2 cut(s) 23, 115
Eco47I GGWCC 1 cut(s) 253
Eco52I CGGCCG 1 cut(s) 27
Eco57I CTGAAG 1 cut(s) 360
Eco88I CYCGRG 3 cut(s) 490, 596, 650
Eco91I GGTNACC 1 cut(s) 171
EcoO109I RGGNCCY 1 cut(s) 253
EcoO65I GGTNACC 1 cut(s) 171
EcoRII CCWGG 4 cut(s) 175, 214, 538, 556
EcoT14I CCWWGG 2 cut(s) 603, 722
ErhI CCWWGG 2 cut(s) 603, 722
FaeI CATG 2 cut(s) 48, 726
FaiI YATR 5 cut(s) 46, 119, 276, 384, 724
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FatI CATG 2 cut(s) 44, 722
Fnu4HI GCNGC 4 cut(s) 30, 208, 707, 754
FokI GGATG 1 cut(s) 340
Fsp4HI GCNGC 4 cut(s) 30, 208, 707, 754
FspBI CTAG 2 cut(s) 84, 760
GluI GCNGC 4 cut(s) 30, 208, 707, 754
HaeIII GGCC 8 cut(s) 23, 29, 43, 115, 398, 602, 644, 688
HapII CCGG 5 cut(s) 40, 204, 390, 491, 678
HgaI GACGC 1 cut(s) 37
Hin1II CATG 2 cut(s) 48, 726
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HpaII CCGG 5 cut(s) 40, 204, 390, 491, 678
HphI GGTGA 6 cut(s) 176, 180, 193, 230, 340, 554
Hpy166II GTNNAC 4 cut(s) 52, 348, 420, 502
Hpy188I TCNGA 2 cut(s) 467, 718
Hpy188III TCNNGA 4 cut(s) 430, 460, 484, 596
Hpy8I GTNNAC 4 cut(s) 52, 348, 420, 502
Hpy99I CGWCG 1 cut(s) 461
HpyAV CCTTC 5 cut(s) 154, 195, 221, 604, 655
HpyCH4III ACNGT 2 cut(s) 10, 471
HpyCH4IV ACGT 2 cut(s) 369, 456
HpyCH4V TGCA 1 cut(s) 706
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 395, 641
HpyF3I CTNAG 6 cut(s) 18, 156, 249, 285, 715, 749
HpySE526I ACGT 2 cut(s) 369, 456
Hsp92II CATG 2 cut(s) 48, 726
Kzo9I GATC 5 cut(s) 232, 360, 432, 462, 718
LmnI GCTCC 1 cut(s) 761
Lsp1109I GCAGC 2 cut(s) 219, 718
LweI GCATC 3 cut(s) 318, 376, 573
MaeI CTAG 2 cut(s) 84, 760
MaeII ACGT 2 cut(s) 369, 456
MaeIII GTNAC 4 cut(s) 10, 171, 218, 673
MalI GATC 5 cut(s) 234, 362, 434, 464, 720
MboI GATC 5 cut(s) 232, 360, 432, 462, 718
MboII GAAGA 6 cut(s) 72, 129, 405, 418, 508, 559
MflI RGATCY 2 cut(s) 360, 718
MseI TTAA 4 cut(s) 92, 144, 266, 366
MspCI CTTAAG 1 cut(s) 265
MspI CCGG 5 cut(s) 40, 204, 390, 491, 678
MspR9I CCNGG 6 cut(s) 177, 216, 491, 492, 540, 558
MvaI CCWGG 4 cut(s) 177, 216, 540, 558
MwoI GCNNNNNNNGC 3 cut(s) 29, 395, 641
NciI CCSGG 2 cut(s) 491, 492
NcoI CCATGG 1 cut(s) 722
NdeII GATC 5 cut(s) 232, 360, 432, 462, 718
NlaIII CATG 2 cut(s) 48, 726
NlaIV GGNNCC 5 cut(s) 68, 255, 362, 687, 757
NmeAIII GCCGAG 2 cut(s) 5, 424
NmuCI GTSAC 3 cut(s) 10, 218, 673
NspV TTCGAA 1 cut(s) 585
PaeR7I CTCGAG 1 cut(s) 596
PceI AGGCCT 2 cut(s) 23, 115
PkrI GCNGC 4 cut(s) 31, 209, 708, 755
PpuMI RGGWCCY 1 cut(s) 253
Psp1406I AACGTT 1 cut(s) 369
Psp5II RGGWCCY 1 cut(s) 253
Psp6I CCWGG 4 cut(s) 175, 214, 538, 556
PspEI GGTNACC 1 cut(s) 171
PspGI CCWGG 4 cut(s) 175, 214, 538, 556
PspN4I GGNNCC 5 cut(s) 68, 255, 362, 687, 757
PspPI GGNCC 2 cut(s) 253, 686
PspPPI RGGWCCY 1 cut(s) 253
PsuI RGATCY 2 cut(s) 360, 718
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SaqAI TTAA 4 cut(s) 92, 144, 266, 366
SatI GCNGC 4 cut(s) 30, 208, 707, 754
Sau3AI GATC 5 cut(s) 232, 360, 432, 462, 718
Sau96I GGNCC 2 cut(s) 253, 686
ScaI AGTACT 1 cut(s) 404
ScrFI CCNGG 6 cut(s) 177, 216, 491, 492, 540, 558
SfaNI GCATC 3 cut(s) 318, 376, 573
Sfr274I CTCGAG 1 cut(s) 596
SfuI TTCGAA 1 cut(s) 585
SinI GGWCC 1 cut(s) 253
SlaI CTCGAG 1 cut(s) 596
SmaI CCCGGG 1 cut(s) 492
SmlI CTYRAG 2 cut(s) 265, 596
SmoI CTYRAG 2 cut(s) 265, 596
SseBI AGGCCT 2 cut(s) 23, 115
SsiI CCGC 2 cut(s) 30, 753
SspMI CTAG 2 cut(s) 84, 760
StuI AGGCCT 2 cut(s) 23, 115
StyD4I CCNGG 6 cut(s) 175, 214, 489, 490, 538, 556
StyI CCWWGG 2 cut(s) 603, 722
TaaI ACNGT 2 cut(s) 10, 471
TaiI ACGT 2 cut(s) 372, 459
TaqI TCGA 7 cut(s) 56, 62, 435, 459, 585, 597, 693
TatI WGTACW 1 cut(s) 402
TauI GCSGC 2 cut(s) 32, 756
Tru1I TTAA 4 cut(s) 92, 144, 266, 366
Tru9I TTAA 4 cut(s) 92, 144, 266, 366
TseFI GTSAC 3 cut(s) 10, 218, 673
TseI GCWGC 2 cut(s) 207, 706
Tsp45I GTSAC 3 cut(s) 10, 218, 673
TspDTI ATGAA 1 cut(s) 430
TspMI CCCGGG 1 cut(s) 490
Vha464I CTTAAG 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 628
XhoI CTCGAG 1 cut(s) 596
XmaI CCCGGG 1 cut(s) 490
XspI CTAG 2 cut(s) 84, 760
ZrmI AGTACT 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.