Rw7G003730

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0014422
Physical Location & Seq
Reverse (-)
3022183 .. 3023137
955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G003730.1

Sequence Viewer

Length: 756 bp
ATGGCAACCGTCACGACTCAGGCGTCCGCCGTCTACCGGCCACAAATCACCTCAAAATCGAGGTTCCTTACCGGCTCTTCCGGCAAGTTAACTAGGGAAGTGGCATTTAGGCCTGTGACATCATCTGCTAGTTCTTTTAAAGTCGAGGCTAAGAAGGGTGAGTGGTTGCCAGGCTTGCCATCACCAGGTTACCTAACTGGCAGTCTTCCTGGTGACAATGGGTTTGATCCTTTGGCACTTGCTGAGGACCCAGAGAACCTGAGGTGGTATGTCCAAGCTGAGCTTGTGAACGGTCGTTGGGCTATGTTGGGTGTAGTTGGGATGCTATTGCCTGAAGTCTTGACAAGCATTGGGATCATTAACGTTCCGAAATGGTACGATGCTGGGAAAGCCGAGTACTTTGCATCTTCCTCCACCCTCTTTGTGATCGAGTTCATCTTGTTCCACTATGTCGAGATCAGACGGTGGCAAGACATCAAGAACCCAGGAAGTGTGAACCAAGACCCCATCTTCAAGCAATACAGCTTGCCACCAAATGAGGTAGGTTACCCTGGTGGCATCTTCAACCCTCTCAACTTTGCACCAACTGAGGAGGCCAAGGAGAAGGAACTCGCCAACGGGAGACTGGCAATGTTGGCATTCCTGGGATTTGTGGTTCAACACAATGTGACTGGCAAAGGACCCTTTGACAACCTAGTGCAGCATCTTTCTGACCCATGGCACAACACCATTGTCCAAACACTAAGGGGCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00196 map00196
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

251

Amino Acids

27.75

Weight (kDa)

6.44

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 62 - 221 1.6e-47 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47470
fragaria_vesca FvH4_5g14770
malus_domestica MD06G1195000.v1.1 MD14G1202000.v1.1
prunus_persica Prupe.5G195100_v2.0.a1
pyrus_communis pycom06g17250 pycom14g16730
rosa_chinensis RchiOBHm_Chr7g0181611
rosa_laevigata RLG00000005179
rosa_multiflora Rmu_sc0000988.1_g000017
rosa_roxburghii Rroxscaffold_3G00271850
rosa_rugosa Rorug06G0442500
rosa_samantha Rh7AG044900 Rh7BG043900 Rh7CG045600 Rh7DG044500
rosa_wichuraiana Rw7G003730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
AccI GTMKAC 1 cut(s) 33
AciI CCGC 1 cut(s) 27
AclI AACGTT 1 cut(s) 363
AclWI GGATC 2 cut(s) 221, 362
AcoI YGGCCR 1 cut(s) 38
AcuI CTGAAG 1 cut(s) 354
AcyI GRCGYC 1 cut(s) 23
AdeI CACNNNGTG 1 cut(s) 667
AfaI GTAC 2 cut(s) 377, 398
AfiI CCNNNNNNNGG 2 cut(s) 36, 185
AgsI TTSAA 3 cut(s) 514, 565, 659
AjnI CCWGG 6 cut(s) 169, 184, 208, 484, 550, 642
AloI GAACNNNNNNTCC 2 cut(s) 639, 671
AluBI AGCT 3 cut(s) 278, 283, 525
AluI AGCT 3 cut(s) 278, 283, 525
Alw26I GTCTC 1 cut(s) 616
AlwI GGATC 2 cut(s) 221, 362
AoxI GGCC 3 cut(s) 38, 110, 594
ApeKI GCWGC 1 cut(s) 700
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
AspS9I GGNCC 2 cut(s) 247, 680
AsuHPI GGTGA 4 cut(s) 40, 170, 174, 224
AvaII GGWCC 2 cut(s) 247, 680
AxyI CCTNAGG 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 197
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 712
BccI CCATC 2 cut(s) 187, 515
BceAI ACGGC 1 cut(s) 14
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BciT130I CCWGG 6 cut(s) 171, 186, 210, 486, 552, 644
BcoDI GTCTC 1 cut(s) 616
BfaI CTAG 4 cut(s) 93, 129, 695, 754
BisI GCNGC 1 cut(s) 701
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 702
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 6 cut(s) 171, 186, 210, 486, 552, 644
Bme18I GGWCC 2 cut(s) 247, 680
BmgT120I GGNCC 2 cut(s) 247, 680
BmiI GGNNCC 3 cut(s) 65, 249, 682
BmrFI CCNGG 6 cut(s) 171, 186, 210, 486, 552, 644
BmsI GCATC 5 cut(s) 312, 370, 413, 567, 712
BpiI GAAGAC 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 243
Bpu1102I GCTNAGC 1 cut(s) 279
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 5 cut(s) 484, 550, 597, 643, 716
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 185
Bse118I RCCGGY 2 cut(s) 36, 71
Bse1I ACTGG 3 cut(s) 202, 630, 676
Bse21I CCTNAGG 1 cut(s) 260
Bse3DI GCAATG 1 cut(s) 636
BseBI CCWGG 6 cut(s) 171, 186, 210, 486, 552, 644
BseDI CCNNGG 5 cut(s) 484, 550, 597, 643, 716
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 2 cut(s) 36, 185
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 5 cut(s) 32, 234, 251, 270, 579
BseNI ACTGG 3 cut(s) 202, 630, 676
BseRI GAGGAG 1 cut(s) 605
BseXI GCAGC 1 cut(s) 712
BseYI CCCAGC 1 cut(s) 383
BsgI GTGCAG 1 cut(s) 719
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 3 cut(s) 40, 112, 596
BsiEI CGRYCG 1 cut(s) 295
BsiSI CCGG 3 cut(s) 37, 72, 81
BslI CCNNNNNNNGG 2 cut(s) 36, 185
BsmAI GTCTC 1 cut(s) 616
BsmI GAATGC 1 cut(s) 638
BsnI GGCC 3 cut(s) 40, 112, 596
Bsp143I GATC 4 cut(s) 226, 354, 426, 456
Bsp1720I GCTNAGC 1 cut(s) 279
Bsp19I CCATGG 1 cut(s) 716
BspACI CCGC 1 cut(s) 27
BspANI GGCC 3 cut(s) 40, 112, 596
BspCNI CTCAG 5 cut(s) 31, 235, 252, 271, 580
BspLI GGNNCC 3 cut(s) 65, 249, 682
BspPI GGATC 2 cut(s) 221, 362
BspQI GCTCTTC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 636
BsrFI RCCGGY 2 cut(s) 36, 71
BsrI ACTGG 3 cut(s) 202, 630, 676
BssAI RCCGGY 2 cut(s) 36, 71
BssECI CCNNGG 5 cut(s) 484, 550, 597, 643, 716
BssMI GATC 4 cut(s) 226, 354, 426, 456
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 2 cut(s) 597, 716
Bst2UI CCWGG 6 cut(s) 171, 186, 210, 486, 552, 644
Bst4CI ACNGT 3 cut(s) 10, 293, 465
Bst6I CTCTTC 1 cut(s) 82
BstACI GRCGYC 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 176, 527
BstDEI CTNAG 7 cut(s) 18, 150, 243, 260, 279, 588, 743
BstDSI CCRYGG 1 cut(s) 716
BstEII GGTNACC 2 cut(s) 188, 545
BstF5I GGATG 1 cut(s) 327
BstKTI GATC 4 cut(s) 229, 357, 429, 459
BstMAI GTCTC 1 cut(s) 616
BstMBI GATC 4 cut(s) 226, 354, 426, 456
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 4 cut(s) 81, 175, 389, 635
BstNI CCWGG 6 cut(s) 171, 186, 210, 486, 552, 644
BstPI GGTNACC 2 cut(s) 188, 545
BstSCI CCNGG 6 cut(s) 169, 184, 208, 484, 550, 642
BstV1I GCAGC 1 cut(s) 712
BstV2I GAAGAC 1 cut(s) 197
Bsu36I CCTNAGG 1 cut(s) 260
BsuRI GGCC 3 cut(s) 40, 112, 596
BtgI CCRYGG 1 cut(s) 716
BtsCI GGATG 1 cut(s) 327
Cac8I GCNNGC 2 cut(s) 176, 527
Cfr10I RCCGGY 2 cut(s) 36, 71
Cfr13I GGNCC 2 cut(s) 247, 680
CseI GACGC 1 cut(s) 12
CsiI ACCWGGT 1 cut(s) 184
Csp6I GTAC 2 cut(s) 376, 397
CspCI CAANNNNNGTGG 2 cut(s) 403, 438
CviAII CATG 1 cut(s) 717
CviQI GTAC 2 cut(s) 376, 397
DdeI CTNAG 7 cut(s) 18, 150, 243, 260, 279, 588, 743
DpnI GATC 4 cut(s) 228, 356, 428, 458
DpnII GATC 4 cut(s) 226, 354, 426, 456
DraI TTTAAA 1 cut(s) 139
DraIII CACNNNGTG 1 cut(s) 667
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
EciI GGCGGA 1 cut(s) 16
Eco130I CCWWGG 2 cut(s) 597, 716
Eco147I AGGCCT 1 cut(s) 112
Eco47I GGWCC 2 cut(s) 247, 680
Eco57I CTGAAG 1 cut(s) 354
Eco81I CCTNAGG 1 cut(s) 260
Eco91I GGTNACC 2 cut(s) 188, 545
EcoO109I RGGNCCY 2 cut(s) 247, 680
EcoO65I GGTNACC 2 cut(s) 188, 545
EcoRII CCWGG 6 cut(s) 169, 184, 208, 484, 550, 642
EcoT14I CCWWGG 2 cut(s) 597, 716
ErhI CCWWGG 2 cut(s) 597, 716
FaeI CATG 1 cut(s) 720
FaiI YATR 4 cut(s) 270, 305, 450, 718
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FatI CATG 1 cut(s) 716
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 701
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 1 cut(s) 701
FspBI CTAG 4 cut(s) 93, 129, 695, 754
GluI GCNGC 1 cut(s) 701
GsaI CCCAGC 1 cut(s) 387
HaeIII GGCC 3 cut(s) 40, 112, 596
HapII CCGG 3 cut(s) 37, 72, 81
HgaI GACGC 1 cut(s) 12
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 1 cut(s) 720
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 1 cut(s) 16
HpaI GTTAAC 1 cut(s) 90
HpaII CCGG 3 cut(s) 37, 72, 81
HphI GGTGA 4 cut(s) 40, 170, 174, 224
Hpy166II GTNNAC 4 cut(s) 34, 90, 289, 496
Hpy188I TCNGA 3 cut(s) 369, 461, 712
Hpy188III TCNNGA 4 cut(s) 13, 340, 454, 478
Hpy8I GTNNAC 4 cut(s) 34, 90, 289, 496
HpyAV CCTTC 2 cut(s) 148, 598
HpyCH4III ACNGT 3 cut(s) 10, 293, 465
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 3 cut(s) 404, 581, 700
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 175, 389, 635
HpyF3I CTNAG 7 cut(s) 18, 150, 243, 260, 279, 588, 743
HpySE526I ACGT 1 cut(s) 363
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 1 cut(s) 720
KspAI GTTAAC 1 cut(s) 90
Kzo9I GATC 4 cut(s) 226, 354, 426, 456
LguI GCTCTTC 1 cut(s) 82
Lsp1109I GCAGC 1 cut(s) 712
LweI GCATC 5 cut(s) 312, 370, 413, 567, 712
MabI ACCWGGT 1 cut(s) 184
MaeI CTAG 4 cut(s) 93, 129, 695, 754
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 6 cut(s) 10, 115, 188, 212, 545, 667
MalI GATC 4 cut(s) 228, 356, 428, 458
MboI GATC 4 cut(s) 226, 354, 426, 456
MboII GAAGA 5 cut(s) 69, 197, 399, 502, 553
MlyI GAGTC 1 cut(s) 10
MseI TTAA 3 cut(s) 89, 138, 360
MspI CCGG 3 cut(s) 37, 72, 81
MspR9I CCNGG 6 cut(s) 171, 186, 210, 486, 552, 644
Mva1269I GAATGC 1 cut(s) 638
MvaI CCWGG 6 cut(s) 171, 186, 210, 486, 552, 644
MwoI GCNNNNNNNGC 4 cut(s) 81, 175, 389, 635
NcoI CCATGG 1 cut(s) 716
NdeII GATC 4 cut(s) 226, 354, 426, 456
NlaIII CATG 1 cut(s) 720
NlaIV GGNNCC 3 cut(s) 65, 249, 682
NmeAIII GCCGAG 1 cut(s) 418
NmuCI GTSAC 4 cut(s) 10, 115, 212, 667
PceI AGGCCT 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PctI GAATGC 1 cut(s) 638
PkrI GCNGC 1 cut(s) 702
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
PpuMI RGGWCCY 2 cut(s) 247, 680
Psp1406I AACGTT 1 cut(s) 363
Psp5II RGGWCCY 2 cut(s) 247, 680
Psp6I CCWGG 6 cut(s) 169, 184, 208, 484, 550, 642
PspEI GGTNACC 2 cut(s) 188, 545
PspFI CCCAGC 1 cut(s) 383
PspGI CCWGG 6 cut(s) 169, 184, 208, 484, 550, 642
PspN4I GGNNCC 3 cut(s) 65, 249, 682
PspPI GGNCC 2 cut(s) 247, 680
PspPPI RGGWCCY 2 cut(s) 247, 680
RsaI GTAC 2 cut(s) 377, 398
RsaNI GTAC 2 cut(s) 376, 397
SapI GCTCTTC 1 cut(s) 82
SaqAI TTAA 3 cut(s) 89, 138, 360
SatI GCNGC 1 cut(s) 701
Sau3AI GATC 4 cut(s) 226, 354, 426, 456
Sau96I GGNCC 2 cut(s) 247, 680
ScaI AGTACT 1 cut(s) 398
SchI GAGTC 1 cut(s) 10
ScrFI CCNGG 6 cut(s) 171, 186, 210, 486, 552, 644
SexAI ACCWGGT 1 cut(s) 184
SfaNI GCATC 5 cut(s) 312, 370, 413, 567, 712
SinI GGWCC 2 cut(s) 247, 680
SseBI AGGCCT 1 cut(s) 112
SsiI CCGC 1 cut(s) 27
SspMI CTAG 4 cut(s) 93, 129, 695, 754
StuI AGGCCT 1 cut(s) 112
StyD4I CCNGG 6 cut(s) 169, 184, 208, 484, 550, 642
StyI CCWWGG 2 cut(s) 597, 716
TaaI ACNGT 3 cut(s) 10, 293, 465
TaiI ACGT 1 cut(s) 366
TaqI TCGA 4 cut(s) 59, 144, 429, 453
TatI WGTACW 1 cut(s) 396
Tru1I TTAA 3 cut(s) 89, 138, 360
Tru9I TTAA 3 cut(s) 89, 138, 360
TseFI GTSAC 4 cut(s) 10, 115, 212, 667
TseI GCWGC 1 cut(s) 700
Tsp45I GTSAC 4 cut(s) 10, 115, 212, 667
TspDTI ATGAA 1 cut(s) 424
VpaK11BI GGWCC 2 cut(s) 247, 680
XcmI CCANNNNNNNNNTGG 1 cut(s) 622
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 4 cut(s) 93, 129, 695, 754
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.