MD14G1202000.v1.1

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0014422
Physical Location & Seq
Reverse (-)
29086734 .. 29088171
1438 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1202000.v1.1.491

Sequence Viewer

Length: 762 bp
ATGGCTACGGTCACAACTCAAGCCTCGGCGGCCGTTTTCCGGCCGTGTGTCAACTCGAAATCAAGGTTCCTTTCAGGGTCTTCGAGTAAATTAAATAGGGAAGTGGCTTTTAGGCCTATGGCTTCTCCTTCTGCTTCTTCGTTTAAAGTTGAGGCCAAGAAGGGTGAGTGGTTACCCGGCTTGGCTTCACCAGACTACCTCACCGGAAGTCTTCCCGGTGACAATGGATTTGATCCTCTGGCACTTGCTGAGGACCCAGAGAACTTGAGGTGGTTTGTCCAAGCTGAGCTTGTCAATAGCAGATGGGCAATGTTGGGTGTTGCTGGGATGCTATTGCCTGAAGTGTTCACCAACTTGGGGATCCTTAACGTCCCCAAATGGTATGATGCCGGAAAGGGCGAGTACTTCGCCTCTTCGTCCACCCTCTTTGTGATCGAGTTCATCCTGTTCCACTACGTCGAGATCAGACGGTGGCAAGACATCAAGAACCCAGGAAGTGTGAACCAAGACCCCATCTTCAAGCAATACAGCTTGCCCCCAGGTGATGTGGGTTACCCAGGCGGCATCTTCAACCCCCTCAACTTCGCACCGACTCTCGAGGCCAAGGAGAAGGAACTTGCCAATGGGAGACTGGCAATGTTGGCATTCCTAGGGTTTGTGGTTCAACACAATGTGACCGGAAAAGGACCGTTTGACAACCTGTTGCAGCACCTCTCAGACCCATGGCATAACACCATTATCCAAACCCTAAGAGGCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00196 map00196
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

254

Amino Acids

27.9

Weight (kDa)

6.43

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 64 - 223 1.7e-45 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47470
fragaria_vesca FvH4_5g14770
malus_domestica MD06G1195000.v1.1 MD14G1202000.v1.1
prunus_persica Prupe.5G195100_v2.0.a1
pyrus_communis pycom06g17250 pycom14g16730
rosa_chinensis RchiOBHm_Chr7g0181611
rosa_laevigata RLG00000005179
rosa_multiflora Rmu_sc0000988.1_g000017
rosa_roxburghii Rroxscaffold_3G00271850
rosa_rugosa Rorug06G0442500
rosa_samantha Rh7AG044900 Rh7BG043900 Rh7CG045600 Rh7DG044500
rosa_wichuraiana Rw7G003730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 29, 561
AclWI GGATC 3 cut(s) 227, 355, 368
AcoI YGGCCR 2 cut(s) 30, 41
AcuI CTGAAG 1 cut(s) 360
AdeI CACNNNGTG 1 cut(s) 673
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 2 cut(s) 39, 357
AgsI TTSAA 3 cut(s) 520, 571, 665
AjnI CCWGG 3 cut(s) 490, 538, 556
AluBI AGCT 3 cut(s) 284, 289, 531
AluI AGCT 3 cut(s) 284, 289, 531
Alw26I GTCTC 1 cut(s) 622
AlwI GGATC 3 cut(s) 227, 355, 368
Ama87I CYCGRG 1 cut(s) 596
AoxI GGCC 5 cut(s) 30, 41, 113, 153, 600
ApeKI GCWGC 1 cut(s) 706
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AspA2I CCTAGG 1 cut(s) 649
AspS9I GGNCC 2 cut(s) 253, 686
AsuC2I CCSGG 2 cut(s) 177, 216
AsuHPI GGTGA 6 cut(s) 176, 180, 193, 230, 340, 554
AvaI CYCGRG 1 cut(s) 596
AvaII GGWCC 2 cut(s) 253, 686
AvrII CCTAGG 1 cut(s) 649
BamHI GGATCC 1 cut(s) 360
BbsI GAAGAC 2 cut(s) 72, 203
BbvCI CCTCAGC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 718
BccI CCATC 2 cut(s) 297, 521
BceAI ACGGC 2 cut(s) 17, 28
BciT130I CCWGG 3 cut(s) 492, 540, 558
BcnI CCSGG 2 cut(s) 177, 216
BcoDI GTCTC 1 cut(s) 622
BfaI CTAG 2 cut(s) 650, 760
BglI GCCNNNNNGGC 1 cut(s) 29
BisI GCNGC 3 cut(s) 30, 562, 707
BlnI CCTAGG 1 cut(s) 649
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 3 cut(s) 31, 563, 708
BmcAI AGTACT 1 cut(s) 404
Bme1390I CCNGG 5 cut(s) 177, 216, 492, 540, 558
Bme18I GGWCC 2 cut(s) 253, 686
BmeT110I CYCGRG 1 cut(s) 596
BmgT120I GGNCC 2 cut(s) 253, 686
BmiI GGNNCC 3 cut(s) 68, 255, 362
BmrFI CCNGG 5 cut(s) 177, 216, 492, 540, 558
BmsI GCATC 3 cut(s) 318, 376, 573
BpiI GAAGAC 2 cut(s) 72, 203
Bpu10I CCTNAGC 1 cut(s) 249
Bpu1102I GCTNAGC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 286
BpuMI CCSGG 2 cut(s) 177, 216
BsaJI CCNNGG 7 cut(s) 24, 490, 538, 556, 603, 649, 722
BsaWI WCCGGW 2 cut(s) 203, 677
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 357
Bse1I ACTGG 1 cut(s) 636
Bse3DI GCAATG 2 cut(s) 315, 642
BseBI CCWGG 3 cut(s) 492, 540, 558
BseDI CCNNGG 7 cut(s) 24, 490, 538, 556, 603, 649, 722
BseGI GGATG 2 cut(s) 333, 441
BseLI CCNNNNNNNGG 2 cut(s) 39, 357
BseMI GCAATG 2 cut(s) 315, 642
BseMII CTCAG 3 cut(s) 240, 276, 729
BseNI ACTGG 1 cut(s) 636
BseX3I CGGCCG 2 cut(s) 30, 41
BseXI GCAGC 1 cut(s) 718
BseYI CCCAGC 1 cut(s) 323
Bsh1285I CGRYCG 2 cut(s) 33, 44
BshFI GGCC 5 cut(s) 32, 43, 115, 155, 602
BsiEI CGRYCG 2 cut(s) 33, 44
BsiHKCI CYCGRG 1 cut(s) 596
BsiSI CCGG 6 cut(s) 40, 177, 204, 216, 390, 678
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 2 cut(s) 39, 357
BsmAI GTCTC 1 cut(s) 622
BsmFI GGGAC 1 cut(s) 356
BsmI GAATGC 1 cut(s) 644
BsnI GGCC 5 cut(s) 32, 43, 115, 155, 602
BsoBI CYCGRG 1 cut(s) 596
Bsp143I GATC 4 cut(s) 232, 360, 432, 462
Bsp1720I GCTNAGC 1 cut(s) 285
Bsp19I CCATGG 1 cut(s) 722
BspACI CCGC 2 cut(s) 29, 561
BspANI GGCC 5 cut(s) 32, 43, 115, 155, 602
BspCNI CTCAG 3 cut(s) 241, 277, 728
BspLI GGNNCC 3 cut(s) 68, 255, 362
BspPI GGATC 3 cut(s) 227, 355, 368
BsrDI GCAATG 2 cut(s) 315, 642
BsrI ACTGG 1 cut(s) 636
BssECI CCNNGG 7 cut(s) 24, 490, 538, 556, 603, 649, 722
BssMI GATC 4 cut(s) 232, 360, 432, 462
BssT1I CCWWGG 3 cut(s) 603, 649, 722
Bst2UI CCWGG 3 cut(s) 492, 540, 558
Bst4CI ACNGT 3 cut(s) 10, 471, 690
Bst6I CTCTTC 1 cut(s) 418
BstC8I GCNNGC 1 cut(s) 533
BstDEI CTNAG 4 cut(s) 249, 285, 715, 749
BstDSI CCRYGG 1 cut(s) 722
BstEII GGTNACC 2 cut(s) 171, 551
BstF5I GGATG 2 cut(s) 333, 441
BstKTI GATC 4 cut(s) 235, 363, 435, 465
BstMAI GTCTC 1 cut(s) 622
BstMBI GATC 4 cut(s) 232, 360, 432, 462
BstMCI CGRYCG 2 cut(s) 33, 44
BstMWI GCNNNNNNNGC 2 cut(s) 29, 641
BstNI CCWGG 3 cut(s) 492, 540, 558
BstPI GGTNACC 2 cut(s) 171, 551
BstSCI CCNGG 5 cut(s) 175, 214, 490, 538, 556
BstV1I GCAGC 1 cut(s) 718
BstV2I GAAGAC 2 cut(s) 72, 203
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BstZI CGGCCG 2 cut(s) 30, 41
BsuRI GGCC 5 cut(s) 32, 43, 115, 155, 602
BtgI CCRYGG 1 cut(s) 722
BtsCI GGATG 2 cut(s) 333, 441
Cac8I GCNNGC 1 cut(s) 533
Cfr13I GGNCC 2 cut(s) 253, 686
Csp6I GTAC 1 cut(s) 403
CspCI CAANNNNNGTGG 2 cut(s) 409, 444
CviAII CATG 1 cut(s) 723
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 4 cut(s) 249, 285, 715, 749
DpnI GATC 4 cut(s) 234, 362, 434, 464
DpnII GATC 4 cut(s) 232, 360, 432, 462
DraI TTTAAA 1 cut(s) 145
DraIII CACNNNGTG 1 cut(s) 673
EaeI YGGCCR 2 cut(s) 30, 41
EagI CGGCCG 2 cut(s) 30, 41
Eam1104I CTCTTC 1 cut(s) 418
EarI CTCTTC 1 cut(s) 418
EclXI CGGCCG 2 cut(s) 30, 41
Eco130I CCWWGG 3 cut(s) 603, 649, 722
Eco147I AGGCCT 1 cut(s) 115
Eco47I GGWCC 2 cut(s) 253, 686
Eco52I CGGCCG 2 cut(s) 30, 41
Eco57I CTGAAG 1 cut(s) 360
Eco88I CYCGRG 1 cut(s) 596
Eco91I GGTNACC 2 cut(s) 171, 551
EcoO109I RGGNCCY 1 cut(s) 253
EcoO65I GGTNACC 2 cut(s) 171, 551
EcoRII CCWGG 3 cut(s) 490, 538, 556
EcoT14I CCWWGG 3 cut(s) 603, 649, 722
ErhI CCWWGG 3 cut(s) 603, 649, 722
FaeI CATG 1 cut(s) 726
FaiI YATR 4 cut(s) 119, 384, 724, 729
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FaqI GGGAC 1 cut(s) 356
FatI CATG 1 cut(s) 722
Fnu4HI GCNGC 3 cut(s) 30, 562, 707
FokI GGATG 2 cut(s) 340, 428
Fsp4HI GCNGC 3 cut(s) 30, 562, 707
FspBI CTAG 2 cut(s) 650, 760
GluI GCNGC 3 cut(s) 30, 562, 707
GsaI CCCAGC 1 cut(s) 327
HaeIII GGCC 5 cut(s) 32, 43, 115, 155, 602
HapII CCGG 6 cut(s) 40, 177, 204, 216, 390, 678
Hin1II CATG 1 cut(s) 726
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HinfI GANTC 1 cut(s) 592
HpaII CCGG 6 cut(s) 40, 177, 204, 216, 390, 678
HphI GGTGA 6 cut(s) 176, 180, 193, 230, 340, 554
Hpy166II GTNNAC 4 cut(s) 52, 348, 420, 502
Hpy188I TCNGA 2 cut(s) 467, 718
Hpy188III TCNNGA 3 cut(s) 460, 484, 596
Hpy8I GTNNAC 4 cut(s) 52, 348, 420, 502
Hpy99I CGWCG 1 cut(s) 461
HpyAV CCTTC 3 cut(s) 138, 154, 604
HpyCH4III ACNGT 3 cut(s) 10, 471, 690
HpyCH4IV ACGT 2 cut(s) 369, 456
HpyCH4V TGCA 1 cut(s) 706
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 641
HpyF3I CTNAG 4 cut(s) 249, 285, 715, 749
HpySE526I ACGT 2 cut(s) 369, 456
Hsp92II CATG 1 cut(s) 726
Kzo9I GATC 4 cut(s) 232, 360, 432, 462
Lsp1109I GCAGC 1 cut(s) 718
LweI GCATC 3 cut(s) 318, 376, 573
MaeI CTAG 2 cut(s) 650, 760
MaeII ACGT 2 cut(s) 369, 456
MaeIII GTNAC 5 cut(s) 10, 171, 218, 551, 673
MalI GATC 4 cut(s) 234, 362, 434, 464
MboI GATC 4 cut(s) 232, 360, 432, 462
MboII GAAGA 6 cut(s) 72, 129, 203, 405, 508, 559
MflI RGATCY 1 cut(s) 360
MluCI AATT 1 cut(s) 89
MlyI GAGTC 1 cut(s) 586
MseI TTAA 3 cut(s) 92, 144, 366
MspI CCGG 6 cut(s) 40, 177, 204, 216, 390, 678
MspR9I CCNGG 5 cut(s) 177, 216, 492, 540, 558
Mva1269I GAATGC 1 cut(s) 644
MvaI CCWGG 3 cut(s) 492, 540, 558
MwoI GCNNNNNNNGC 2 cut(s) 29, 641
NciI CCSGG 2 cut(s) 177, 216
NcoI CCATGG 1 cut(s) 722
NdeII GATC 4 cut(s) 232, 360, 432, 462
NlaIII CATG 1 cut(s) 726
NlaIV GGNNCC 3 cut(s) 68, 255, 362
NmeAIII GCCGAG 1 cut(s) 5
NmuCI GTSAC 3 cut(s) 10, 218, 673
PaeR7I CTCGAG 1 cut(s) 596
PceI AGGCCT 1 cut(s) 115
PctI GAATGC 1 cut(s) 644
PkrI GCNGC 3 cut(s) 31, 563, 708
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
PpuMI RGGWCCY 1 cut(s) 253
Psp5II RGGWCCY 1 cut(s) 253
Psp6I CCWGG 3 cut(s) 490, 538, 556
PspEI GGTNACC 2 cut(s) 171, 551
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 3 cut(s) 490, 538, 556
PspN4I GGNNCC 3 cut(s) 68, 255, 362
PspPI GGNCC 2 cut(s) 253, 686
PspPPI RGGWCCY 1 cut(s) 253
PsuI RGATCY 1 cut(s) 360
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SaqAI TTAA 3 cut(s) 92, 144, 366
SatI GCNGC 3 cut(s) 30, 562, 707
Sau3AI GATC 4 cut(s) 232, 360, 432, 462
Sau96I GGNCC 2 cut(s) 253, 686
ScaI AGTACT 1 cut(s) 404
SchI GAGTC 1 cut(s) 586
ScrFI CCNGG 5 cut(s) 177, 216, 492, 540, 558
SfaNI GCATC 3 cut(s) 318, 376, 573
Sfr274I CTCGAG 1 cut(s) 596
SinI GGWCC 2 cut(s) 253, 686
SlaI CTCGAG 1 cut(s) 596
SmlI CTYRAG 3 cut(s) 18, 265, 596
SmoI CTYRAG 3 cut(s) 18, 265, 596
Sse9I AATT 1 cut(s) 89
SseBI AGGCCT 1 cut(s) 115
SsiI CCGC 2 cut(s) 29, 561
SspMI CTAG 2 cut(s) 650, 760
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 5 cut(s) 175, 214, 490, 538, 556
StyI CCWWGG 3 cut(s) 603, 649, 722
TaaI ACNGT 3 cut(s) 10, 471, 690
TaiI ACGT 2 cut(s) 372, 459
TaqI TCGA 5 cut(s) 56, 83, 435, 459, 597
TasI AATT 1 cut(s) 89
TatI WGTACW 1 cut(s) 402
TauI GCSGC 2 cut(s) 32, 564
Tru1I TTAA 3 cut(s) 92, 144, 366
Tru9I TTAA 3 cut(s) 92, 144, 366
TseFI GTSAC 3 cut(s) 10, 218, 673
TseI GCWGC 1 cut(s) 706
Tsp45I GTSAC 3 cut(s) 10, 218, 673
TspDTI ATGAA 1 cut(s) 430
VpaK11BI GGWCC 2 cut(s) 253, 686
XcmI CCANNNNNNNNNTGG 1 cut(s) 628
XhoI CTCGAG 1 cut(s) 596
XmaJI CCTAGG 1 cut(s) 649
XspI CTAG 2 cut(s) 650, 760
ZrmI AGTACT 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.