FvH4_5g14770

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014422
Physical Location & Seq
Forward (+)
8390506 .. 8392365
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14770.t1

Sequence Viewer

Length: 756 bp
ATGGCAACCGTCACGACTCAGGCGTCCGCGGTCTACCGGCCACAAATCACCTCGAAATCGAGGTTCCTTACCGGCTCTTCCGGCAAGTTAACTAGGGAAGTTGCTTTTAGGCCTGTGACATCTCCTTCTGCTAGTTCTTTTAAAGTTGAGGCCAAGAAGGGCGAGTGGTTACCTGGCTTGCCATCACCAGGTTACCTAACTGGCAGTCTTCCTGGTGACAATGGGTTTGATCCTTTGGCACTTGCTGAGGACCCAGAGAACCTGAAATGGTTTGTCCAAGCTGAGCTTGTGAACGGTCGTTGGGCTATGTTGGGTGTAGCTGGGATGCTATTGCCTGAAGTCTTGACAAGCATTGGGATCATTAACGTTCCAAAATGGTACGATGCTGGGAAAGCTGAGTACTTTGCTTCTTCATCCACCCTGTTTGTGATCGAGTTCATCTTGTTCCACTATGTCGAGATCAGACGGTGGCAAGACATCAAGAACCCAGGAAGTGTGAACCAAGACCCCATCTTTAAGCAATACAGCTTGCCTCCAAATGAGGTAGGTTACCCTGGTGGCATCTTCAACCCTCTCAACTTTGCACCTACTGAGGAGGCCAAGGAGAAGGAAATCGCCAACGGGAGACTGGCAATGTTGGCATTCCTGGGATTTGTGGTTCAACACAACGTGACTGGCAAAGGACCCTTTGACAACCTAGTGCAGCATCTTTCTGACCCATGGCACAACACCATTGTCCAAACACTAAGGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00196 map00196
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

252

Amino Acids

27.61

Weight (kDa)

6.44

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 63 - 222 2.2e-47 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47470
fragaria_vesca FvH4_5g14770
malus_domestica MD06G1195000.v1.1 MD14G1202000.v1.1
prunus_persica Prupe.5G195100_v2.0.a1
pyrus_communis pycom06g17250 pycom14g16730
rosa_chinensis RchiOBHm_Chr7g0181611
rosa_laevigata RLG00000005179
rosa_multiflora Rmu_sc0000988.1_g000017
rosa_roxburghii Rroxscaffold_3G00271850
rosa_rugosa Rorug06G0442500
rosa_samantha Rh7AG044900 Rh7BG043900 Rh7CG045600 Rh7DG044500
rosa_wichuraiana Rw7G003730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
AccI GTMKAC 1 cut(s) 33
AccII CGCG 1 cut(s) 29
AciI CCGC 2 cut(s) 27, 29
AclI AACGTT 1 cut(s) 366
AclWI GGATC 2 cut(s) 224, 365
AcoI YGGCCR 1 cut(s) 38
AcuI CTGAAG 1 cut(s) 357
AcyI GRCGYC 1 cut(s) 23
AdeI CACNNNGTG 1 cut(s) 670
AfaI GTAC 2 cut(s) 380, 401
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 2 cut(s) 568, 662
AjnI CCWGG 6 cut(s) 172, 187, 211, 487, 553, 645
AloI GAACNNNNNNTCC 2 cut(s) 642, 674
AluBI AGCT 5 cut(s) 281, 286, 320, 395, 528
AluI AGCT 5 cut(s) 281, 286, 320, 395, 528
Alw26I GTCTC 1 cut(s) 619
AlwI GGATC 2 cut(s) 224, 365
AoxI GGCC 4 cut(s) 38, 110, 150, 597
ApeKI GCWGC 1 cut(s) 703
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AspS9I GGNCC 2 cut(s) 250, 683
AsuHPI GGTGA 3 cut(s) 40, 177, 227
AvaII GGWCC 2 cut(s) 250, 683
BbsI GAAGAC 1 cut(s) 200
BbvCI CCTCAGC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 715
BccI CCATC 2 cut(s) 190, 518
BciT130I CCWGG 6 cut(s) 174, 189, 213, 489, 555, 647
BcoDI GTCTC 1 cut(s) 619
BfaI CTAG 4 cut(s) 93, 132, 698, 754
BisI GCNGC 1 cut(s) 704
BlpI GCTNAGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 705
BmcAI AGTACT 1 cut(s) 401
Bme1390I CCNGG 6 cut(s) 174, 189, 213, 489, 555, 647
Bme18I GGWCC 2 cut(s) 250, 683
BmgT120I GGNCC 2 cut(s) 250, 683
BmiI GGNNCC 3 cut(s) 65, 252, 685
BmrFI CCNGG 6 cut(s) 174, 189, 213, 489, 555, 647
BmsI GCATC 4 cut(s) 315, 373, 570, 715
BpiI GAAGAC 1 cut(s) 200
Bpu10I CCTNAGC 1 cut(s) 246
Bpu1102I GCTNAGC 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 6 cut(s) 27, 487, 553, 600, 646, 719
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse118I RCCGGY 2 cut(s) 36, 71
Bse1I ACTGG 3 cut(s) 205, 633, 679
Bse3DI GCAATG 1 cut(s) 639
BseBI CCWGG 6 cut(s) 174, 189, 213, 489, 555, 647
BseDI CCNNGG 6 cut(s) 27, 487, 553, 600, 646, 719
BseGI GGATG 2 cut(s) 330, 413
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMI GCAATG 1 cut(s) 639
BseMII CTCAG 5 cut(s) 32, 237, 273, 387, 582
BseNI ACTGG 3 cut(s) 205, 633, 679
BseRI GAGGAG 1 cut(s) 608
BseXI GCAGC 1 cut(s) 715
BseYI CCCAGC 2 cut(s) 320, 386
BsgI GTGCAG 1 cut(s) 722
Bsh1236I CGCG 1 cut(s) 29
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 4 cut(s) 40, 112, 152, 599
BsiEI CGRYCG 1 cut(s) 298
BsiSI CCGG 3 cut(s) 37, 72, 81
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 619
BsmI GAATGC 1 cut(s) 641
BsnI GGCC 4 cut(s) 40, 112, 152, 599
Bsp143I GATC 4 cut(s) 229, 357, 429, 459
Bsp1720I GCTNAGC 1 cut(s) 282
Bsp19I CCATGG 1 cut(s) 719
BspACI CCGC 2 cut(s) 27, 29
BspANI GGCC 4 cut(s) 40, 112, 152, 599
BspCNI CTCAG 5 cut(s) 31, 238, 274, 388, 583
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 3 cut(s) 65, 252, 685
BspPI GGATC 2 cut(s) 224, 365
BspQI GCTCTTC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 639
BsrFI RCCGGY 2 cut(s) 36, 71
BsrI ACTGG 3 cut(s) 205, 633, 679
BssAI RCCGGY 2 cut(s) 36, 71
BssECI CCNNGG 6 cut(s) 27, 487, 553, 600, 646, 719
BssMI GATC 4 cut(s) 229, 357, 429, 459
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 2 cut(s) 600, 719
Bst2UI CCWGG 6 cut(s) 174, 189, 213, 489, 555, 647
Bst4CI ACNGT 3 cut(s) 10, 296, 468
Bst6I CTCTTC 1 cut(s) 82
BstACI GRCGYC 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 179, 530
BstDEI CTNAG 6 cut(s) 18, 246, 282, 396, 591, 746
BstDSI CCRYGG 2 cut(s) 27, 719
BstEII GGTNACC 3 cut(s) 168, 191, 548
BstF5I GGATG 2 cut(s) 330, 413
BstFNI CGCG 1 cut(s) 29
BstKTI GATC 4 cut(s) 232, 360, 432, 462
BstMAI GTCTC 1 cut(s) 619
BstMBI GATC 4 cut(s) 229, 357, 429, 459
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 3 cut(s) 81, 392, 638
BstNI CCWGG 6 cut(s) 174, 189, 213, 489, 555, 647
BstPI GGTNACC 3 cut(s) 168, 191, 548
BstSCI CCNGG 6 cut(s) 172, 187, 211, 487, 553, 645
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 715
BstV2I GAAGAC 1 cut(s) 200
BsuRI GGCC 4 cut(s) 40, 112, 152, 599
BtgI CCRYGG 2 cut(s) 27, 719
BtsCI GGATG 2 cut(s) 330, 413
Cac8I GCNNGC 2 cut(s) 179, 530
Cfr10I RCCGGY 2 cut(s) 36, 71
Cfr13I GGNCC 2 cut(s) 250, 683
Cfr42I CCGCGG 1 cut(s) 30
CseI GACGC 1 cut(s) 12
CsiI ACCWGGT 1 cut(s) 187
Csp6I GTAC 2 cut(s) 379, 400
CspCI CAANNNNNGTGG 2 cut(s) 406, 441
CviAII CATG 1 cut(s) 720
CviQI GTAC 2 cut(s) 379, 400
DdeI CTNAG 6 cut(s) 18, 246, 282, 396, 591, 746
DpnI GATC 4 cut(s) 231, 359, 431, 461
DpnII GATC 4 cut(s) 229, 357, 429, 459
DraI TTTAAA 1 cut(s) 142
DraIII CACNNNGTG 1 cut(s) 670
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
Eco130I CCWWGG 2 cut(s) 600, 719
Eco147I AGGCCT 1 cut(s) 112
Eco47I GGWCC 2 cut(s) 250, 683
Eco57I CTGAAG 1 cut(s) 357
Eco91I GGTNACC 3 cut(s) 168, 191, 548
EcoO109I RGGNCCY 2 cut(s) 250, 683
EcoO65I GGTNACC 3 cut(s) 168, 191, 548
EcoRII CCWGG 6 cut(s) 172, 187, 211, 487, 553, 645
EcoT14I CCWWGG 2 cut(s) 600, 719
ErhI CCWWGG 2 cut(s) 600, 719
FaeI CATG 1 cut(s) 723
FaiI YATR 3 cut(s) 308, 453, 721
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FatI CATG 1 cut(s) 719
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 704
FokI GGATG 2 cut(s) 337, 400
Fsp4HI GCNGC 1 cut(s) 704
FspBI CTAG 4 cut(s) 93, 132, 698, 754
GluI GCNGC 1 cut(s) 704
GsaI CCCAGC 2 cut(s) 324, 390
HaeIII GGCC 4 cut(s) 40, 112, 152, 599
HapII CCGG 3 cut(s) 37, 72, 81
HgaI GACGC 1 cut(s) 12
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 1 cut(s) 723
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 1 cut(s) 16
HpaI GTTAAC 1 cut(s) 90
HpaII CCGG 3 cut(s) 37, 72, 81
HphI GGTGA 3 cut(s) 40, 177, 227
Hpy166II GTNNAC 4 cut(s) 34, 90, 292, 499
Hpy188I TCNGA 2 cut(s) 464, 715
Hpy188III TCNNGA 4 cut(s) 13, 343, 457, 481
Hpy8I GTNNAC 4 cut(s) 34, 90, 292, 499
HpyAV CCTTC 3 cut(s) 135, 151, 601
HpyCH4III ACNGT 3 cut(s) 10, 296, 468
HpyCH4IV ACGT 2 cut(s) 366, 669
HpyCH4V TGCA 2 cut(s) 584, 703
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 392, 638
HpyF3I CTNAG 6 cut(s) 18, 246, 282, 396, 591, 746
HpySE526I ACGT 2 cut(s) 366, 669
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 1 cut(s) 723
KspAI GTTAAC 1 cut(s) 90
KspI CCGCGG 1 cut(s) 30
Kzo9I GATC 4 cut(s) 229, 357, 429, 459
LguI GCTCTTC 1 cut(s) 82
Lsp1109I GCAGC 1 cut(s) 715
LweI GCATC 4 cut(s) 315, 373, 570, 715
MabI ACCWGGT 1 cut(s) 187
MaeI CTAG 4 cut(s) 93, 132, 698, 754
MaeII ACGT 2 cut(s) 366, 669
MaeIII GTNAC 7 cut(s) 10, 115, 168, 191, 215, 548, 670
MalI GATC 4 cut(s) 231, 359, 431, 461
MboI GATC 4 cut(s) 229, 357, 429, 459
MboII GAAGA 4 cut(s) 69, 200, 402, 556
MlyI GAGTC 1 cut(s) 10
MnlI CCTC 9 cut(s) 54, 61, 142, 241, 535, 543, 582, 586, 589
MseI TTAA 4 cut(s) 89, 141, 363, 516
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 3 cut(s) 37, 72, 81
MspR9I CCNGG 6 cut(s) 174, 189, 213, 489, 555, 647
Mva1269I GAATGC 1 cut(s) 641
MvaI CCWGG 6 cut(s) 174, 189, 213, 489, 555, 647
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 3 cut(s) 81, 392, 638
NcoI CCATGG 1 cut(s) 719
NdeII GATC 4 cut(s) 229, 357, 429, 459
NlaIII CATG 1 cut(s) 723
NlaIV GGNNCC 3 cut(s) 65, 252, 685
NmuCI GTSAC 4 cut(s) 10, 115, 215, 670
PceI AGGCCT 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PctI GAATGC 1 cut(s) 641
PkrI GCNGC 1 cut(s) 705
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
PpuMI RGGWCCY 2 cut(s) 250, 683
Psp1406I AACGTT 1 cut(s) 366
Psp5II RGGWCCY 2 cut(s) 250, 683
Psp6I CCWGG 6 cut(s) 172, 187, 211, 487, 553, 645
PspEI GGTNACC 3 cut(s) 168, 191, 548
PspFI CCCAGC 2 cut(s) 320, 386
PspGI CCWGG 6 cut(s) 172, 187, 211, 487, 553, 645
PspN4I GGNNCC 3 cut(s) 65, 252, 685
PspPI GGNCC 2 cut(s) 250, 683
PspPPI RGGWCCY 2 cut(s) 250, 683
RsaI GTAC 2 cut(s) 380, 401
RsaNI GTAC 2 cut(s) 379, 400
SacII CCGCGG 1 cut(s) 30
SapI GCTCTTC 1 cut(s) 82
SaqAI TTAA 4 cut(s) 89, 141, 363, 516
SatI GCNGC 1 cut(s) 704
Sau3AI GATC 4 cut(s) 229, 357, 429, 459
Sau96I GGNCC 2 cut(s) 250, 683
ScaI AGTACT 1 cut(s) 401
SchI GAGTC 1 cut(s) 10
ScrFI CCNGG 6 cut(s) 174, 189, 213, 489, 555, 647
SexAI ACCWGGT 1 cut(s) 187
SfaNI GCATC 4 cut(s) 315, 373, 570, 715
Sfr303I CCGCGG 1 cut(s) 30
SgrBI CCGCGG 1 cut(s) 30
SinI GGWCC 2 cut(s) 250, 683
SseBI AGGCCT 1 cut(s) 112
SsiI CCGC 2 cut(s) 27, 29
SspMI CTAG 4 cut(s) 93, 132, 698, 754
StuI AGGCCT 1 cut(s) 112
StyD4I CCNGG 6 cut(s) 172, 187, 211, 487, 553, 645
StyI CCWWGG 2 cut(s) 600, 719
TaaI ACNGT 3 cut(s) 10, 296, 468
TaiI ACGT 2 cut(s) 369, 672
TaqI TCGA 4 cut(s) 53, 59, 432, 456
TatI WGTACW 1 cut(s) 399
Tru1I TTAA 4 cut(s) 89, 141, 363, 516
Tru9I TTAA 4 cut(s) 89, 141, 363, 516
TseFI GTSAC 4 cut(s) 10, 115, 215, 670
TseI GCWGC 1 cut(s) 703
Tsp45I GTSAC 4 cut(s) 10, 115, 215, 670
TspDTI ATGAA 2 cut(s) 402, 427
VpaK11BI GGWCC 2 cut(s) 250, 683
XcmI CCANNNNNNNNNTGG 1 cut(s) 625
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 4 cut(s) 93, 132, 698, 754
ZrmI AGTACT 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.