Rh7BG043900

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014422
Physical Location & Seq
Reverse (-)
2766875 .. 2768194
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG043900.1

Sequence Viewer

Length: 684 bp
ATGGCAACCGTCACGACTCAGGCGTCCGCCGTCTACCGGCCACAAATCACCTCGAAATCGAGGTTCCTTACCGGCTCTTCTGGCAAGTTAACTAGGGAAGTGGCTTTTAGGCCTGTGACATCTTCTGCTAGTTCTTTTAAAGTTGAGGCCAAGAAGGGTGAGTGGTTACCTGGCTTGCCATCACCAGGTTACCTAACTGGCAGTCTTCCTGGTGACAATGGGTTTGATCCTTTGGCACTTGCTGAGGACCCAGAGAACCTGAACTGGTTTGTCCAAGCTGAGCTTGTGAACGGTCGTTGGGCTATGTTGGGTGTAGTTGGGATGCTATTGCCTGAAGTCTTGACAAGCATTGGGATCATTAACGTTCCGAAATGGTACGATGCTGGGAAAGCCGAGTACTTTGCATCTTCCTCCACCCTCTTTGTGATCGAGTTCATCTTGTTCCACTATGTCGAGATCAGACGGTGGCAAGACATCAAGAACCCAGGAAGTGTGAACCAAGACCCCATCTTCAAGCAATACAGCTTGCCACCAAATGAGGTAGGTTACCCTGGTGGCATCTTCAACCCTCTCAACTTTGCACCAACTGAGGAGGCCAAGGAGAAGGAACTCGCCAACGGTAAGTCTTTGAGAAACAGCCTCAAGCTCGTTTTTGATCAGATGGCTTTTGTGGGTTTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00196 map00196
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

227

Amino Acids

25.02

Weight (kDa)

5.94

Isoelectric Point (pI)

38.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 62 - 207 7.1e-37 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014422)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47470
fragaria_vesca FvH4_5g14770
malus_domestica MD06G1195000.v1.1 MD14G1202000.v1.1
prunus_persica Prupe.5G195100_v2.0.a1
pyrus_communis pycom06g17250 pycom14g16730
rosa_chinensis RchiOBHm_Chr7g0181611
rosa_laevigata RLG00000005179
rosa_multiflora Rmu_sc0000988.1_g000017
rosa_roxburghii Rroxscaffold_3G00271850
rosa_rugosa Rorug06G0442500
rosa_samantha Rh7AG044900 Rh7BG043900 Rh7CG045600 Rh7DG044500
rosa_wichuraiana Rw7G003730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
AccI GTMKAC 1 cut(s) 33
AciI CCGC 1 cut(s) 27
AclI AACGTT 1 cut(s) 363
AclWI GGATC 2 cut(s) 221, 362
AcoI YGGCCR 1 cut(s) 38
AcuI CTGAAG 1 cut(s) 354
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 2 cut(s) 377, 398
AfiI CCNNNNNNNGG 2 cut(s) 36, 185
AgsI TTSAA 3 cut(s) 514, 565, 679
AjnI CCWGG 5 cut(s) 169, 184, 208, 484, 550
AluBI AGCT 4 cut(s) 278, 283, 525, 646
AluI AGCT 4 cut(s) 278, 283, 525, 646
AlwI GGATC 2 cut(s) 221, 362
AoxI GGCC 4 cut(s) 38, 110, 147, 594
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
AspS9I GGNCC 1 cut(s) 247
AsuHPI GGTGA 4 cut(s) 40, 170, 174, 224
AvaII GGWCC 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 197
BbvCI CCTCAGC 1 cut(s) 243
BccI CCATC 3 cut(s) 187, 515, 655
BceAI ACGGC 1 cut(s) 14
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BciT130I CCWGG 5 cut(s) 171, 186, 210, 486, 552
BclI TGATCA 1 cut(s) 655
BfaI CTAG 2 cut(s) 93, 129
BlpI GCTNAGC 1 cut(s) 279
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 5 cut(s) 171, 186, 210, 486, 552
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 2 cut(s) 65, 249
BmrFI CCNGG 5 cut(s) 171, 186, 210, 486, 552
BmsI GCATC 4 cut(s) 312, 370, 413, 567
BpiI GAAGAC 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 243
Bpu1102I GCTNAGC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 626
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 3 cut(s) 484, 550, 597
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 185
Bse118I RCCGGY 2 cut(s) 36, 71
Bse1I ACTGG 2 cut(s) 202, 269
BseBI CCWGG 5 cut(s) 171, 186, 210, 486, 552
BseDI CCNNGG 3 cut(s) 484, 550, 597
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 2 cut(s) 36, 185
BseMII CTCAG 4 cut(s) 32, 234, 270, 579
BseNI ACTGG 2 cut(s) 202, 269
BseRI GAGGAG 1 cut(s) 605
BseYI CCCAGC 1 cut(s) 383
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 4 cut(s) 40, 112, 149, 596
BsiEI CGRYCG 1 cut(s) 295
BsiSI CCGG 2 cut(s) 37, 72
BslI CCNNNNNNNGG 2 cut(s) 36, 185
BsnI GGCC 4 cut(s) 40, 112, 149, 596
Bsp143I GATC 5 cut(s) 226, 354, 426, 456, 655
Bsp1720I GCTNAGC 1 cut(s) 279
BspACI CCGC 1 cut(s) 27
BspANI GGCC 4 cut(s) 40, 112, 149, 596
BspCNI CTCAG 4 cut(s) 31, 235, 271, 580
BspLI GGNNCC 2 cut(s) 65, 249
BspPI GGATC 2 cut(s) 221, 362
BspQI GCTCTTC 1 cut(s) 82
BsrFI RCCGGY 2 cut(s) 36, 71
BsrI ACTGG 2 cut(s) 202, 269
BssAI RCCGGY 2 cut(s) 36, 71
BssECI CCNNGG 3 cut(s) 484, 550, 597
BssMI GATC 5 cut(s) 226, 354, 426, 456, 655
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 1 cut(s) 597
Bst2UI CCWGG 5 cut(s) 171, 186, 210, 486, 552
Bst4CI ACNGT 4 cut(s) 10, 293, 465, 620
Bst6I CTCTTC 1 cut(s) 82
BstACI GRCGYC 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 176, 527
BstDEI CTNAG 4 cut(s) 18, 243, 279, 588
BstEII GGTNACC 3 cut(s) 165, 188, 545
BstF5I GGATG 1 cut(s) 327
BstKTI GATC 5 cut(s) 229, 357, 429, 459, 658
BstMBI GATC 5 cut(s) 226, 354, 426, 456, 655
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 2 cut(s) 81, 389
BstNI CCWGG 5 cut(s) 171, 186, 210, 486, 552
BstPI GGTNACC 3 cut(s) 165, 188, 545
BstSCI CCNGG 5 cut(s) 169, 184, 208, 484, 550
BstV2I GAAGAC 1 cut(s) 197
BsuRI GGCC 4 cut(s) 40, 112, 149, 596
BtsCI GGATG 1 cut(s) 327
Cac8I GCNNGC 2 cut(s) 176, 527
Cfr10I RCCGGY 2 cut(s) 36, 71
Cfr13I GGNCC 1 cut(s) 247
CseI GACGC 1 cut(s) 12
CsiI ACCWGGT 1 cut(s) 184
Csp6I GTAC 2 cut(s) 376, 397
CspCI CAANNNNNGTGG 2 cut(s) 403, 438
CviQI GTAC 2 cut(s) 376, 397
DdeI CTNAG 4 cut(s) 18, 243, 279, 588
DpnI GATC 5 cut(s) 228, 356, 428, 458, 657
DpnII GATC 5 cut(s) 226, 354, 426, 456, 655
DraI TTTAAA 1 cut(s) 139
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
EciI GGCGGA 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 597
Eco147I AGGCCT 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 354
Eco91I GGTNACC 3 cut(s) 165, 188, 545
EcoO109I RGGNCCY 1 cut(s) 247
EcoO65I GGTNACC 3 cut(s) 165, 188, 545
EcoRII CCWGG 5 cut(s) 169, 184, 208, 484, 550
EcoT14I CCWWGG 1 cut(s) 597
ErhI CCWWGG 1 cut(s) 597
FaiI YATR 2 cut(s) 305, 450
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FbaI TGATCA 1 cut(s) 655
FblI GTMKAC 1 cut(s) 33
FokI GGATG 1 cut(s) 334
FspBI CTAG 2 cut(s) 93, 129
GsaI CCCAGC 1 cut(s) 387
HaeIII GGCC 4 cut(s) 40, 112, 149, 596
HapII CCGG 2 cut(s) 37, 72
HgaI GACGC 1 cut(s) 12
Hin1I GRCGYC 1 cut(s) 23
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 1 cut(s) 16
HpaI GTTAAC 1 cut(s) 90
HpaII CCGG 2 cut(s) 37, 72
HphI GGTGA 4 cut(s) 40, 170, 174, 224
Hpy166II GTNNAC 4 cut(s) 34, 90, 289, 496
Hpy188I TCNGA 3 cut(s) 369, 461, 660
Hpy188III TCNNGA 4 cut(s) 13, 340, 454, 478
Hpy8I GTNNAC 4 cut(s) 34, 90, 289, 496
HpyAV CCTTC 2 cut(s) 148, 598
HpyCH4III ACNGT 4 cut(s) 10, 293, 465, 620
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 2 cut(s) 404, 581
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 389
HpyF3I CTNAG 4 cut(s) 18, 243, 279, 588
HpySE526I ACGT 1 cut(s) 363
Hsp92I GRCGYC 1 cut(s) 23
Ksp22I TGATCA 1 cut(s) 655
KspAI GTTAAC 1 cut(s) 90
Kzo9I GATC 5 cut(s) 226, 354, 426, 456, 655
LguI GCTCTTC 1 cut(s) 82
LweI GCATC 4 cut(s) 312, 370, 413, 567
MabI ACCWGGT 1 cut(s) 184
MaeI CTAG 2 cut(s) 93, 129
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 6 cut(s) 10, 115, 165, 188, 212, 545
MalI GATC 5 cut(s) 228, 356, 428, 458, 657
MboI GATC 5 cut(s) 226, 354, 426, 456, 655
MboII GAAGA 6 cut(s) 69, 114, 197, 399, 502, 553
MlyI GAGTC 1 cut(s) 10
MseI TTAA 3 cut(s) 89, 138, 360
MspI CCGG 2 cut(s) 37, 72
MspR9I CCNGG 5 cut(s) 171, 186, 210, 486, 552
MvaI CCWGG 5 cut(s) 171, 186, 210, 486, 552
MwoI GCNNNNNNNGC 2 cut(s) 81, 389
NdeII GATC 5 cut(s) 226, 354, 426, 456, 655
NlaIV GGNNCC 2 cut(s) 65, 249
NmeAIII GCCGAG 1 cut(s) 418
NmuCI GTSAC 3 cut(s) 10, 115, 212
PceI AGGCCT 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
PpuMI RGGWCCY 1 cut(s) 247
Psp1406I AACGTT 1 cut(s) 363
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 5 cut(s) 169, 184, 208, 484, 550
PspEI GGTNACC 3 cut(s) 165, 188, 545
PspFI CCCAGC 1 cut(s) 383
PspGI CCWGG 5 cut(s) 169, 184, 208, 484, 550
PspN4I GGNNCC 2 cut(s) 65, 249
PspPI GGNCC 1 cut(s) 247
PspPPI RGGWCCY 1 cut(s) 247
RsaI GTAC 2 cut(s) 377, 398
RsaNI GTAC 2 cut(s) 376, 397
SapI GCTCTTC 1 cut(s) 82
SaqAI TTAA 3 cut(s) 89, 138, 360
Sau3AI GATC 5 cut(s) 226, 354, 426, 456, 655
Sau96I GGNCC 1 cut(s) 247
ScaI AGTACT 1 cut(s) 398
SchI GAGTC 1 cut(s) 10
ScrFI CCNGG 5 cut(s) 171, 186, 210, 486, 552
SexAI ACCWGGT 1 cut(s) 184
SfaNI GCATC 4 cut(s) 312, 370, 413, 567
SinI GGWCC 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
SseBI AGGCCT 1 cut(s) 112
SsiI CCGC 1 cut(s) 27
SspMI CTAG 2 cut(s) 93, 129
StuI AGGCCT 1 cut(s) 112
StyD4I CCNGG 5 cut(s) 169, 184, 208, 484, 550
StyI CCWWGG 1 cut(s) 597
TaaI ACNGT 4 cut(s) 10, 293, 465, 620
TaiI ACGT 1 cut(s) 366
TaqI TCGA 4 cut(s) 53, 59, 429, 453
TatI WGTACW 1 cut(s) 396
Tru1I TTAA 3 cut(s) 89, 138, 360
Tru9I TTAA 3 cut(s) 89, 138, 360
TseFI GTSAC 3 cut(s) 10, 115, 212
Tsp45I GTSAC 3 cut(s) 10, 115, 212
TspDTI ATGAA 1 cut(s) 424
VpaK11BI GGWCC 1 cut(s) 247
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 2 cut(s) 93, 129
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.