Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004910

Physical Location & Seq

Genomic Coordinates Forward (+)

17523367 .. 17525540

Gene Structure 2174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G47550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCTGATCATTTGAGTTTATGTACCGATCGTCTCATAACATCTGAGAGCTTGGACTCAGAGAAAGATTCAGATTCTTCAGGAGAAAGTTCTTACCGGCCTCAAGGCACAGACTTGGCTTCTTCATCTGTGAATGAAACTGAGGTTCCTAGAGAGTACTACGCGGTTGCGGATGAGGAAGAACCTCTTCTCCAATCTGTTGAGTGTCGTATTTGCCAAGAGGAAGATAGTACTAAGAACCTTGAAGCTCCTTGTGCTTGTAATGGTAGTTTAAAGTATGCTCACCGCAAGTGTGTTCAGCGTTGGTGTAATGAGAAAGGCGACATAACCTGTGAAATATGTCACCAGCCTTATCAACATGGATACACTGCACCTCCGCCTCCTCCTCCTGATGAAACTATAATTCACATCGGTGACGATTGGGAGAACGGAGTTCCGTTGGACTTGACCGACCCGCGCATTCTGGCAATGGCGGCTGCAGAACGTCATTTCTTGGAAGCAGACTATGATGAATATTCTGAGAATAACTCAAGCGGAGCTGCCTTTTGTCGCTCTGCTGCTCTCATCCTAATGGCACTTTTACTGTTACGAGATGCGCTAAATCTCACAACGAACCCAGACGACGAGGACGATCCAACTGCCTTCTTCTCTGTATGTTCATCTTTACTTACTTTCACTACTTCTTTATACCGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070647 GO:0071704 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

232

Amino Acids

25.78

Weight (kDa)

4.32

Isoelectric Point (pI)

57.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	69 - 114	7.4e-14	RING-variant domain
DUF3675	PF12428	121 - 237	2e-40	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47550 AT3G47550 AT3G47550 AT3G47550
fragaria_vesca	FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930
malus_domestica	MD06G1193400.v1.1 MD14G1200500.v1.1
prunus_persica	Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1
pyrus_communis	pycom06g17150 pycom14g16620
rosa_chinensis	RchiOBHm_Chr7g0181451
rosa_laevigata	RLG00000005193
rosa_multiflora	Rmu_sc0004621.1_g000021
rosa_roxburghii	Rroxscaffold_3G00271990
rosa_rugosa	Rorug06G0441300 Rorug06G0441400 Rorug06G0441400
rosa_samantha	Rh7BG042600 Rh7CG044400
rosa_wichuraiana	Rw7G003590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	164, 457
AciI	CCGC	7 cut(s)	164, 170, 286, 377, 455, 473, 534
AclWI	GGATC	1 cut(s)	626
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	3 cut(s)	25, 158, 232
AgsI	TTSAA	1 cut(s)	245
AleI	CACNNNNGTG	1 cut(s)	411
AloI	GAACNNNNNNTCC	2 cut(s)	174, 206
AluBI	AGCT	3 cut(s)	51, 248, 539
AluI	AGCT	3 cut(s)	51, 248, 539
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	626
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	3 cut(s)	476, 539, 557
Asp700I	GAANNNNTTC	1 cut(s)	186
AspLEI	GCGC	2 cut(s)	459, 598
AsuHPI	GGTGA	3 cut(s)	275, 335, 425
BbvI	GCAGC	3 cut(s)	463, 526, 544
BcgI	CGANNNNNNTGC	2 cut(s)	620, 654
BciVI	GTATCC	1 cut(s)	356
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	1 cut(s)	477
BfuI	GTATCC	1 cut(s)	356
BisI	GCNGC	4 cut(s)	474, 477, 540, 558
BlsI	GCNGC	4 cut(s)	475, 478, 541, 559
BmcAI	AGTACT	2 cut(s)	158, 232
BmiI	GGNNCC	1 cut(s)	147
BmsI	GCATC	1 cut(s)	583
BplI	GAGNNNNNCTC	2 cut(s)	512, 544
BpuEI	CTTGAG	2 cut(s)	87, 514
BsaXI	ACNNNNNCTCC	4 cut(s)	174, 204, 358, 388
Bse118I	RCCGGY	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	474
BseGI	GGATG	2 cut(s)	178, 564
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	4 cut(s)	36, 72, 132, 510
BseRI	GAGGAG	2 cut(s)	372, 375
BseXI	GCAGC	3 cut(s)	463, 526, 544
BsgI	GTGCAG	1 cut(s)	354
Bsh1236I	CGCG	2 cut(s)	164, 457
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	100
BsiEI	CGRYCG	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	97
BsmAI	GTCTC	1 cut(s)	38
BsmBI	CGTCTC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	459
BsnI	GGCC	1 cut(s)	100
Bsp143I	GATC	3 cut(s)	7, 28, 631
BspACI	CCGC	7 cut(s)	164, 170, 286, 377, 455, 473, 534
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	4 cut(s)	37, 71, 133, 511
BspFNI	CGCG	2 cut(s)	164, 457
BspLI	GGNNCC	1 cut(s)	147
BspMAI	CTGCAG	1 cut(s)	481
BspPI	GGATC	1 cut(s)	626
BsrDI	GCAATG	1 cut(s)	474
BsrFI	RCCGGY	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	96
BssMI	GATC	3 cut(s)	7, 28, 631
Bst4CI	ACNGT	2 cut(s)	585, 692
Bst6I	CTCTTC	1 cut(s)	192
BstDEI	CTNAG	5 cut(s)	45, 58, 141, 234, 519
BstF5I	GGATG	2 cut(s)	178, 564
BstFNI	CGCG	2 cut(s)	164, 457
BstHHI	GCGC	2 cut(s)	459, 598
BstKTI	GATC	3 cut(s)	10, 31, 634
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	3 cut(s)	7, 28, 631
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 473
BstSFI	CTRYAG	1 cut(s)	477
BstUI	CGCG	2 cut(s)	164, 457
BstV1I	GCAGC	3 cut(s)	463, 526, 544
BsuI	GTATCC	1 cut(s)	356
BsuRI	GGCC	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	178, 564
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	2 cut(s)	366, 694
CfoI	GCGC	2 cut(s)	459, 598
Cfr10I	RCCGGY	1 cut(s)	96
Csp6I	GTAC	3 cut(s)	24, 157, 231
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	8 cut(s)	5, 51, 100, 119, 248, 349, 476, 539
CviKI_1	RGCY	8 cut(s)	5, 51, 100, 119, 248, 349, 476, 539
CviQI	GTAC	3 cut(s)	24, 157, 231
DdeI	CTNAG	5 cut(s)	45, 58, 141, 234, 519
DpnI	GATC	3 cut(s)	9, 30, 633
DpnII	GATC	3 cut(s)	7, 28, 631
DraI	TTTAAA	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
EciI	GGCGGA	1 cut(s)	366
Eco57I	CTGAAG	1 cut(s)	63
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	1 cut(s)	362
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FatI	CATG	1 cut(s)	358
FauI	CCCGC	1 cut(s)	462
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	4 cut(s)	474, 477, 540, 558
FokI	GGATG	2 cut(s)	185, 551
Fsp4HI	GCNGC	4 cut(s)	474, 477, 540, 558
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	2 cut(s)	458, 597
GluI	GCNGC	4 cut(s)	474, 477, 540, 558
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	1 cut(s)	97
HhaI	GCGC	2 cut(s)	459, 598
Hin1II	CATG	1 cut(s)	362
Hin6I	GCGC	2 cut(s)	457, 596
HinP1I	GCGC	2 cut(s)	457, 596
HinfI	GANTC	3 cut(s)	56, 68, 74
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	3 cut(s)	275, 335, 425
Hpy188I	TCNGA	4 cut(s)	46, 61, 73, 520
Hpy188III	TCNNGA	2 cut(s)	81, 389
Hpy99I	CGWCG	1 cut(s)	626
HpyAV	CCTTC	1 cut(s)	652
HpyCH4III	ACNGT	2 cut(s)	585, 692
HpyCH4IV	ACGT	1 cut(s)	484
HpyCH4V	TGCA	2 cut(s)	371, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 473
HpyF3I	CTNAG	5 cut(s)	45, 58, 141, 234, 519
HpySE526I	ACGT	1 cut(s)	484
Hsp92II	CATG	1 cut(s)	362
HspAI	GCGC	2 cut(s)	457, 596
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 28, 631
LmnI	GCTCC	2 cut(s)	253, 536
LpnPI	CCDG	7 cut(s)	66, 110, 343, 359, 402, 449, 630
Lsp1109I	GCAGC	3 cut(s)	463, 526, 544
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	1 cut(s)	484
MaeIII	GTNAC	4 cut(s)	341, 413, 585, 692
MalI	GATC	3 cut(s)	9, 30, 633
MboI	GATC	3 cut(s)	7, 28, 631
MboII	GAAGA	6 cut(s)	69, 114, 179, 191, 236, 637
MluCI	AATT	1 cut(s)	402
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	2 cut(s)	420, 659
MroXI	GAANNNNTTC	1 cut(s)	186
MseI	TTAA	1 cut(s)	272
MslI	CAYNNNNRTG	2 cut(s)	411, 569
MspI	CCGG	1 cut(s)	97
Mva1269I	GAATGC	1 cut(s)	459
MvnI	CGCG	2 cut(s)	164, 457
MwoI	GCNNNNNNNGC	2 cut(s)	254, 473
NdeII	GATC	3 cut(s)	7, 28, 631
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	1 cut(s)	147
NmuCI	GTSAC	3 cut(s)	341, 413, 692
OliI	CACNNNNGTG	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	627
PctI	GAATGC	1 cut(s)	459
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	68, 74
PkrI	GCNGC	4 cut(s)	475, 478, 541, 559
Ple19I	CGATCG	1 cut(s)	31
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	481
PvuI	CGATCG	1 cut(s)	31
RsaI	GTAC	3 cut(s)	25, 158, 232
RsaNI	GTAC	3 cut(s)	24, 157, 231
RseI	CAYNNNNRTG	2 cut(s)	411, 569
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	4 cut(s)	474, 477, 540, 558
Sau3AI	GATC	3 cut(s)	7, 28, 631
ScaI	AGTACT	2 cut(s)	158, 232
SchI	GAGTC	1 cut(s)	50
SetI	ASST	9 cut(s)	53, 147, 187, 243, 250, 332, 376, 487, 541
SfaNI	GCATC	1 cut(s)	583
SfcI	CTRYAG	1 cut(s)	477
SmiMI	CAYNNNNRTG	2 cut(s)	411, 569
SmlI	CTYRAG	2 cut(s)	102, 529
SmoI	CTYRAG	2 cut(s)	102, 529
Sse9I	AATT	1 cut(s)	402
SsiI	CCGC	7 cut(s)	164, 170, 286, 377, 455, 473, 534
SspI	AATATT	1 cut(s)	515
SspMI	CTAG	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	585, 692
TaiI	ACGT	1 cut(s)	487
TaqII	GACCGA	1 cut(s)	464
TasI	AATT	1 cut(s)	402
TatI	WGTACW	2 cut(s)	156, 230
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	2 cut(s)	68, 74
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	3 cut(s)	341, 413, 692
TseI	GCWGC	3 cut(s)	476, 539, 557
Tsp45I	GTSAC	3 cut(s)	341, 413, 692
TspDTI	ATGAA	5 cut(s)	114, 150, 408, 525, 648
TspGWI	ACGGA	2 cut(s)	426, 444
TspRI	CASTG	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	186
XspI	CTAG	1 cut(s)	150
ZrmI	AGTACT	2 cut(s)	158, 232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.