Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004910

Physical Location & Seq

Genomic Coordinates Reverse (-)

15787502 .. 15791723

Gene Structure 4222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G193700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGGTGATCACCTGGTGTTGTGTGTTGACCGCTTCACAAAACCTGAAAGCTTGCAATCACTGCAAGGGAATGAGGCCCCAGGATCTTCTTCAGAGGGTTCATGCTCCCAATCGGCCGAGCTACCCACTTGCGCCATTGATGTTAAGGGGGTAGGGGAGAAGGTTGTAACTGAAGAAGAAGAGCCACTGATTCAGACGGTTGAATGTCGCATTTGCCAGGAAGAAGATAGCGTTAAGAATTTGGAAGTCCCCTGTGCTTGCAGTGGCAGCTTAAAATTTGCTCATAGAAAATGTGTCCAGCGATGGTGCAATGAGAAGGGAGATATAACTTGTGAAATTTGTCATCAGCCATACCAACCTGGTTATACTGCCCCACCACCTCCGCCTCAGTCTGAAGATACCACAATTGACATCAGTGAGGGTTGGACAATCTCTGGTACCCCTTTGGATTTGCGTGATCCTCGACTATTAGCAATGGCAGCGGCTGAACGTCACTTTCTAGAGGCTGAATATGATGAGTATGCTGATACAAATGCTAGTGGAGCAGCTTTTTGCCGCTCTGCTGCTCTAATTTTAATGGCTCTCCTCCTCTTGAGGCATGCTTTGACCCTCCCCAATGGAGATGGGGATGATGATGATGCTTCAACCTTCTTTTCTCTGTTCTTGCTCCGGGCCGCTGGTTTTCTTCTCCCATGCTACATTATGGCTTGGGCCATCAGCATATTACAACGTCGAAGGCAAAGACAGGAGGCAGCAGCACTTGCGGCAACTGAGGTTGCATTTATGCTGCAGGCAGGGCAACACCGGGGCTTGCAGTTCACAATAGCTCCAGGACCTGCAGTGACTCCCCATCAGGAGCCAATTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070647 GO:0071704 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

290

Amino Acids

31.51

Weight (kDa)

4.71

Isoelectric Point (pI)

58.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47550 AT3G47550 AT3G47550 AT3G47550
fragaria_vesca	FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930
malus_domestica	MD06G1193400.v1.1 MD14G1200500.v1.1
prunus_persica	Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1
pyrus_communis	pycom06g17150 pycom14g16620
rosa_chinensis	RchiOBHm_Chr7g0181451
rosa_laevigata	RLG00000005193
rosa_multiflora	Rmu_sc0004621.1_g000021
rosa_roxburghii	Rroxscaffold_3G00271990
rosa_rugosa	Rorug06G0441300 Rorug06G0441400 Rorug06G0441400
rosa_samantha	Rh7BG042600 Rh7CG044400
rosa_wichuraiana	Rw7G003590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	844
Acc65I	GGTACC	1 cut(s)	437
AccB1I	GGYRCC	1 cut(s)	437
AccBSI	CCGCTC	1 cut(s)	558
AciI	CCGC	6 cut(s)	31, 383, 482, 556, 675, 764
AclWI	GGATC	2 cut(s)	91, 452
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	3 cut(s)	238, 275, 336
AcuI	CTGAAG	3 cut(s)	75, 192, 414
AdeI	CACNNNGTG	1 cut(s)	16
AfaI	GTAC	1 cut(s)	439
AgsI	TTSAA	3 cut(s)	203, 645, 866
AjnI	CCWGG	5 cut(s)	12, 79, 216, 358, 829
AluBI	AGCT	5 cut(s)	51, 121, 270, 548, 827
AluI	AGCT	5 cut(s)	51, 121, 270, 548, 827
AlwI	GGATC	2 cut(s)	91, 452
AlwNI	CAGNNNCTG	2 cut(s)	485, 836
AoxI	GGCC	4 cut(s)	75, 114, 672, 711
ApeKI	GCWGC	7 cut(s)	267, 479, 545, 563, 752, 755, 787
ApoI	RAATTY	3 cut(s)	238, 275, 336
Asp718I	GGTACC	1 cut(s)	437
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	4 cut(s)	76, 672, 711, 833
AsuC2I	CCSGG	2 cut(s)	671, 806
AsuHPI	GGTGA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	833
BanI	GGYRCC	1 cut(s)	437
BbvI	GCAGC	7 cut(s)	279, 491, 550, 557, 764, 767, 774
BccI	CCATC	4 cut(s)	297, 617, 722, 858
BciT130I	CCWGG	5 cut(s)	14, 81, 218, 360, 831
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	2 cut(s)	671, 806
BfaI	CTAG	2 cut(s)	500, 537
BfmI	CTRYAG	2 cut(s)	788, 837
BfuAI	ACCTGC	1 cut(s)	844
Bme1390I	CCNGG	7 cut(s)	14, 81, 218, 360, 671, 806, 831
Bme18I	GGWCC	1 cut(s)	833
BmgT120I	GGNCC	4 cut(s)	76, 672, 711, 833
BmiI	GGNNCC	3 cut(s)	78, 439, 858
BmrFI	CCNGG	7 cut(s)	14, 81, 218, 360, 671, 806, 831
BmsI	GCATC	1 cut(s)	628
BpmI	CTGGAG	1 cut(s)	813
BpuEI	CTTGAG	1 cut(s)	613
BpuMI	CCSGG	2 cut(s)	671, 806
BsaJI	CCNNGG	2 cut(s)	79, 805
BsaXI	ACNNNNNCTCC	2 cut(s)	811, 841
Bse3DI	GCAATG	2 cut(s)	316, 480
BseBI	CCWGG	5 cut(s)	14, 81, 218, 360, 831
BseDI	CCNNGG	2 cut(s)	79, 805
BseGI	GGATG	1 cut(s)	634
BseMI	GCAATG	2 cut(s)	316, 480
BseMII	CTCAG	2 cut(s)	401, 762
BseRI	GAGGAG	2 cut(s)	575, 578
BseX3I	CGGCCG	1 cut(s)	114
BseXI	GCAGC	7 cut(s)	279, 491, 550, 557, 764, 767, 774
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	4 cut(s)	77, 116, 674, 713
BshNI	GGYRCC	1 cut(s)	437
BsiEI	CGRYCG	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	670, 805
BslFI	GGGAC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	4 cut(s)	77, 116, 674, 713
Bsp143I	GATC	3 cut(s)	7, 83, 457
BspACI	CCGC	6 cut(s)	31, 383, 482, 556, 675, 764
BspANI	GGCC	4 cut(s)	77, 116, 674, 713
BspCNI	CTCAG	2 cut(s)	400, 763
BspLI	GGNNCC	3 cut(s)	78, 439, 858
BspMAI	CTGCAG	2 cut(s)	792, 841
BspMI	ACCTGC	1 cut(s)	844
BspPI	GGATC	2 cut(s)	91, 452
BspQI	GCTCTTC	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	437
BsrBI	CCGCTC	1 cut(s)	558
BsrDI	GCAATG	2 cut(s)	316, 480
BssECI	CCNNGG	2 cut(s)	79, 805
BssMI	GATC	3 cut(s)	7, 83, 457
Bst2UI	CCWGG	5 cut(s)	14, 81, 218, 360, 831
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	174
BstAPI	GCANNNNNTGC	2 cut(s)	61, 761
BstC8I	GCNNGC	5 cut(s)	53, 259, 600, 792, 812
BstDEI	CTNAG	2 cut(s)	387, 771
BstF5I	GGATG	1 cut(s)	634
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	3 cut(s)	10, 86, 460
BstMBI	GATC	3 cut(s)	7, 83, 457
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	7 cut(s)	61, 267, 479, 542, 761, 764, 796
BstNI	CCWGG	5 cut(s)	14, 81, 218, 360, 831
BstNSI	RCATGY	1 cut(s)	602
BstSCI	CCNGG	7 cut(s)	12, 79, 216, 358, 669, 804, 829
BstSFI	CTRYAG	2 cut(s)	788, 837
BstV1I	GCAGC	7 cut(s)	279, 491, 550, 557, 764, 767, 774
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BstZI	CGGCCG	1 cut(s)	114
BsuRI	GGCC	4 cut(s)	77, 116, 674, 713
BtgZI	GCGATG	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	634
BtsI	GCAGTG	3 cut(s)	59, 268, 846
BtsIMutI	CAGTG	5 cut(s)	59, 185, 268, 421, 846
BveI	ACCTGC	1 cut(s)	844
Cac8I	GCNNGC	5 cut(s)	53, 259, 600, 792, 812
CaiI	CAGNNNCTG	2 cut(s)	485, 836
CfoI	GCGC	1 cut(s)	134
Cfr13I	GGNCC	4 cut(s)	76, 672, 711, 833
CsiI	ACCWGGT	2 cut(s)	12, 358
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	3 cut(s)	102, 599, 693
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	2 cut(s)	387, 771
DpnI	GATC	3 cut(s)	9, 85, 459
DpnII	GATC	3 cut(s)	7, 83, 457
DraIII	CACNNNGTG	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	114
EagI	CGGCCG	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	372
EclXI	CGGCCG	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	833
Eco52I	CGGCCG	1 cut(s)	114
Eco57I	CTGAAG	3 cut(s)	75, 192, 414
EcoO109I	RGGNCCY	2 cut(s)	76, 833
EcoRII	CCWGG	5 cut(s)	12, 79, 216, 358, 829
FaeI	CATG	3 cut(s)	105, 602, 696
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	3 cut(s)	101, 598, 692
FbaI	TGATCA	1 cut(s)	7
FokI	GGATG	1 cut(s)	641
FspBI	CTAG	2 cut(s)	500, 537
GlaI	GCGC	1 cut(s)	133
GsuI	CTGGAG	1 cut(s)	813
HaeIII	GGCC	4 cut(s)	77, 116, 674, 713
HapII	CCGG	2 cut(s)	670, 805
HhaI	GCGC	1 cut(s)	134
Hin1II	CATG	3 cut(s)	105, 602, 696
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	2 cut(s)	190, 844
HpaII	CCGG	2 cut(s)	670, 805
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	28, 819
Hpy188I	TCNGA	3 cut(s)	94, 195, 394
Hpy188III	TCNNGA	3 cut(s)	500, 592, 854
Hpy8I	GTNNAC	2 cut(s)	28, 819
Hpy99I	CGWCG	1 cut(s)	735
HpyAV	CCTTC	4 cut(s)	154, 310, 658, 729
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	2 cut(s)	490, 730
HpyCH4V	TGCA	8 cut(s)	55, 64, 261, 309, 779, 790, 814, 839
HpyF10VI	GCNNNNNNNGC	7 cut(s)	61, 267, 479, 542, 761, 764, 796
HpyF3I	CTNAG	2 cut(s)	387, 771
HpySE526I	ACGT	2 cut(s)	490, 730
Hsp92II	CATG	3 cut(s)	105, 602, 696
HspAI	GCGC	1 cut(s)	132
KpnI	GGTACC	1 cut(s)	441
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 83, 457
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	5 cut(s)	110, 542, 672, 832, 856
Lsp1109I	GCAGC	7 cut(s)	279, 491, 550, 557, 764, 767, 774
LweI	GCATC	1 cut(s)	628
MabI	ACCWGGT	2 cut(s)	12, 358
MaeI	CTAG	2 cut(s)	500, 537
MaeII	ACGT	2 cut(s)	490, 730
MaeIII	GTNAC	3 cut(s)	166, 491, 841
MalI	GATC	3 cut(s)	9, 85, 459
MbiI	CCGCTC	1 cut(s)	558
MboI	GATC	3 cut(s)	7, 83, 457
MboII	GAAGA	9 cut(s)	78, 81, 185, 188, 191, 233, 236, 407, 677
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	1 cut(s)	83
MluCI	AATT	6 cut(s)	238, 275, 336, 405, 570, 861
MlyI	GAGTC	1 cut(s)	838
MmeI	TCCRAC	1 cut(s)	404
MseI	TTAA	4 cut(s)	144, 234, 272, 575
MspA1I	CMGCKG	2 cut(s)	482, 677
MspI	CCGG	2 cut(s)	670, 805
MspR9I	CCNGG	7 cut(s)	14, 81, 218, 360, 671, 806, 831
MunI	CAATTG	1 cut(s)	405
MvaI	CCWGG	5 cut(s)	14, 81, 218, 360, 831
MwoI	GCNNNNNNNGC	7 cut(s)	61, 267, 479, 542, 761, 764, 796
NciI	CCSGG	2 cut(s)	671, 806
NdeII	GATC	3 cut(s)	7, 83, 457
NlaIII	CATG	3 cut(s)	105, 602, 696
NlaIV	GGNNCC	3 cut(s)	78, 439, 858
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	2 cut(s)	491, 841
NspI	RCATGY	1 cut(s)	602
PaeI	GCATGC	1 cut(s)	602
PciSI	GCTCTTC	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	190
PfoI	TCCNGGA	1 cut(s)	829
PleI	GAGTC	1 cut(s)	838
PpsI	GAGTC	1 cut(s)	838
PpuMI	RGGWCCY	1 cut(s)	833
Psp5II	RGGWCCY	1 cut(s)	833
Psp6I	CCWGG	5 cut(s)	12, 79, 216, 358, 829
PspGI	CCWGG	5 cut(s)	12, 79, 216, 358, 829
PspN4I	GGNNCC	3 cut(s)	78, 439, 858
PspPI	GGNCC	4 cut(s)	76, 672, 711, 833
PspPPI	RGGWCCY	1 cut(s)	833
PstI	CTGCAG	2 cut(s)	792, 841
PstNI	CAGNNNCTG	2 cut(s)	485, 836
PsuI	RGATCY	1 cut(s)	83
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	4 cut(s)	144, 234, 272, 575
Sau3AI	GATC	3 cut(s)	7, 83, 457
Sau96I	GGNCC	4 cut(s)	76, 672, 711, 833
SchI	GAGTC	1 cut(s)	838
ScrFI	CCNGG	7 cut(s)	14, 81, 218, 360, 671, 806, 831
SexAI	ACCWGGT	2 cut(s)	12, 358
SfaNI	GCATC	1 cut(s)	628
SfcI	CTRYAG	2 cut(s)	788, 837
SinI	GGWCC	1 cut(s)	833
SmlI	CTYRAG	1 cut(s)	592
SmoI	CTYRAG	1 cut(s)	592
SphI	GCATGC	1 cut(s)	602
Sse9I	AATT	6 cut(s)	238, 275, 336, 405, 570, 861
SsiI	CCGC	6 cut(s)	31, 383, 482, 556, 675, 764
SspMI	CTAG	2 cut(s)	500, 537
StyD4I	CCNGG	7 cut(s)	12, 79, 216, 358, 669, 804, 829
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	2 cut(s)	493, 733
TaqI	TCGA	2 cut(s)	463, 733
TasI	AATT	6 cut(s)	238, 275, 336, 405, 570, 861
TauI	GCSGC	4 cut(s)	485, 558, 677, 767
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	4 cut(s)	144, 234, 272, 575
Tru9I	TTAA	4 cut(s)	144, 234, 272, 575
TscAI	CASTG	5 cut(s)	66, 192, 268, 421, 846
TseFI	GTSAC	2 cut(s)	491, 841
TseI	GCWGC	7 cut(s)	267, 479, 545, 563, 752, 755, 787
Tsp45I	GTSAC	2 cut(s)	491, 841
TspDTI	ATGAA	1 cut(s)	90
TspRI	CASTG	5 cut(s)	66, 192, 268, 421, 846
VpaK11BI	GGWCC	1 cut(s)	833
XapI	RAATTY	3 cut(s)	238, 275, 336
XbaI	TCTAGA	1 cut(s)	499
XceI	RCATGY	1 cut(s)	602
XspI	CTAG	2 cut(s)	500, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.