Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0004910

Physical Location & Seq

Genomic Coordinates Reverse (-)

28987955 .. 28992027

Gene Structure 4073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1200500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGTGATCACCTGGTGTTGTGTGTTGACCGCTTCACAAAAACTGAAAGCTTGCAAGGGAGTGAGACCCCAGGATCTTCTGTAGAGGGTTCAAGCTCCCAATCTGCTGAGCTACCCACTTGTGCCATTGATGTTAAGGGGGTCGGGGAGAAGGCTATAGCTGAAGAAGAAGAAGAGCCTCTGATTCAGACGGTTGAATGTCGCATTTGCCAGGAAGAAGATAGCGTTAAAAATTTGGAGGTCCCCTGTTCTTGCAGCGGTAGCTTAAAATTCGCTCATAGGAAATGTGTCCAGCGATGGTGCAATGAGAAGGGAGATATAATTTGTGAAATTTGTCATCAGTCATACCAACCTGATTATACTGCCCCACCACCTCCTCCTCAGTCTGAAGATACCACAATTGACATCAGTGATGGTTGGACAATCTCTGGTACCCCTTTGGATTTGCGTGATCCTCGACTATTAGCAATGGCAGCGGCTGAACGTCACTTACTAGAGGCCGAATATGATGAGTATTCTGACACAAATGCTAGTGGAGCAGCCTTTTGCCGCTCTGTTGCTCTAATTTTAATGGCTCTTCTCCTCTTGAGGCATGCATTGACCCTCCCCAATGGTGACGGGGATGATGATGATGCATCCACTTTTTTTTCTCTTTTCATGCTCCGGGCTGCTGGTTTTCTTCTCCCGTGCTACATTATGGCTTGGGCCATCAGCATATTACAACGTCGAAGGCAAAGACAGGAAGCAGCAGCACTTGCAGCAACTGAGGTTGCATTTATGCTGCAGGCAGGGCAACGCAGGGGCTTGCAGTTCACAATAGCTCCAGGACCTGCAGTGACTCCCCATCAGGAGCCAATTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070647 GO:0071704 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

288

Amino Acids

31.37

Weight (kDa)

4.64

Isoelectric Point (pI)

58.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	67 - 112	5e-13	RING-variant domain
DUF3675	PF12428	118 - 237	6.1e-46	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47550 AT3G47550 AT3G47550 AT3G47550
fragaria_vesca	FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930
malus_domestica	MD06G1193400.v1.1 MD14G1200500.v1.1
prunus_persica	Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1
pyrus_communis	pycom06g17150 pycom14g16620
rosa_chinensis	RchiOBHm_Chr7g0181451
rosa_laevigata	RLG00000005193
rosa_multiflora	Rmu_sc0004621.1_g000021
rosa_roxburghii	Rroxscaffold_3G00271990
rosa_rugosa	Rorug06G0441300 Rorug06G0441400 Rorug06G0441400
rosa_samantha	Rh7BG042600 Rh7CG044400
rosa_wichuraiana	Rw7G003590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	838
Acc65I	GGTACC	1 cut(s)	431
AccB1I	GGYRCC	1 cut(s)	431
AccBSI	CCGCTC	1 cut(s)	552
AciI	CCGC	4 cut(s)	31, 258, 476, 550
AclWI	GGATC	2 cut(s)	82, 446
AcsI	RAATTY	3 cut(s)	232, 269, 330
AcuI	CTGAAG	2 cut(s)	183, 408
AdeI	CACNNNGTG	1 cut(s)	16
AfaI	GTAC	1 cut(s)	433
AgsI	TTSAA	3 cut(s)	93, 197, 860
AjnI	CCWGG	4 cut(s)	12, 70, 210, 823
AluBI	AGCT	6 cut(s)	51, 96, 112, 161, 264, 821
AluI	AGCT	6 cut(s)	51, 96, 112, 161, 264, 821
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	2 cut(s)	82, 446
AlwNI	CAGNNNCTG	3 cut(s)	479, 764, 830
AoxI	GGCC	2 cut(s)	498, 705
ApeKI	GCWGC	8 cut(s)	255, 473, 539, 668, 746, 749, 758, 781
ApoI	RAATTY	3 cut(s)	232, 269, 330
Asp718I	GGTACC	1 cut(s)	431
AspS9I	GGNCC	3 cut(s)	241, 705, 827
AsuC2I	CCSGG	1 cut(s)	665
AsuHPI	GGTGA	2 cut(s)	17, 626
AvaII	GGWCC	2 cut(s)	241, 827
BanI	GGYRCC	1 cut(s)	431
BbvI	GCAGC	8 cut(s)	267, 485, 551, 655, 758, 761, 768, 770
BccI	CCATC	4 cut(s)	291, 407, 716, 852
BciT130I	CCWGG	4 cut(s)	14, 72, 212, 825
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	665
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	494, 531
BfmI	CTRYAG	4 cut(s)	81, 156, 782, 831
BfuAI	ACCTGC	1 cut(s)	838
BlpI	GCTNAGC	1 cut(s)	108
Bme1390I	CCNGG	5 cut(s)	14, 72, 212, 665, 825
Bme18I	GGWCC	2 cut(s)	241, 827
BmgT120I	GGNCC	3 cut(s)	241, 705, 827
BmiI	GGNNCC	3 cut(s)	243, 433, 852
BmrFI	CCNGG	5 cut(s)	14, 72, 212, 665, 825
BmsI	GCATC	2 cut(s)	622, 644
BpmI	CTGGAG	1 cut(s)	807
Bpu1102I	GCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	607
BpuMI	CCSGG	1 cut(s)	665
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	805, 835
Bse3DI	GCAATG	2 cut(s)	310, 474
BseBI	CCWGG	4 cut(s)	14, 72, 212, 825
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	2 cut(s)	628, 635
BseMI	GCAATG	2 cut(s)	310, 474
BseMII	CTCAG	3 cut(s)	99, 395, 756
BseRI	GAGGAG	3 cut(s)	366, 369, 572
BseXI	GCAGC	8 cut(s)	267, 485, 551, 655, 758, 761, 768, 770
BshFI	GGCC	2 cut(s)	500, 707
BshNI	GGYRCC	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	664
BslFI	GGGAC	1 cut(s)	227
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	500, 707
Bso31I	GGTCTC	1 cut(s)	59
Bsp143I	GATC	3 cut(s)	7, 74, 451
Bsp1720I	GCTNAGC	1 cut(s)	108
BspACI	CCGC	4 cut(s)	31, 258, 476, 550
BspANI	GGCC	2 cut(s)	500, 707
BspCNI	CTCAG	3 cut(s)	100, 394, 757
BspLI	GGNNCC	3 cut(s)	243, 433, 852
BspMAI	CTGCAG	2 cut(s)	786, 835
BspMI	ACCTGC	1 cut(s)	838
BspPI	GGATC	2 cut(s)	82, 446
BspQI	GCTCTTC	2 cut(s)	168, 582
BspT107I	GGYRCC	1 cut(s)	431
BspTNI	GGTCTC	1 cut(s)	59
BsrBI	CCGCTC	1 cut(s)	552
BsrDI	GCAATG	2 cut(s)	310, 474
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	3 cut(s)	7, 74, 451
Bst2UI	CCWGG	4 cut(s)	14, 72, 212, 825
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	2 cut(s)	168, 582
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstC8I	GCNNGC	4 cut(s)	53, 594, 786, 806
BstDEI	CTNAG	3 cut(s)	108, 381, 765
BstF5I	GGATG	2 cut(s)	628, 635
BstKTI	GATC	3 cut(s)	10, 77, 454
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	3 cut(s)	7, 74, 451
BstMWI	GCNNNNNNNGC	6 cut(s)	261, 473, 536, 755, 758, 790
BstNI	CCWGG	4 cut(s)	14, 72, 212, 825
BstNSI	RCATGY	1 cut(s)	596
BstSCI	CCNGG	5 cut(s)	12, 70, 210, 663, 823
BstSFI	CTRYAG	4 cut(s)	81, 156, 782, 831
BstV1I	GCAGC	8 cut(s)	267, 485, 551, 655, 758, 761, 768, 770
BstX2I	RGATCY	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	74
BsuRI	GGCC	2 cut(s)	500, 707
BtgZI	GCGATG	1 cut(s)	310
BtsCI	GGATG	2 cut(s)	628, 635
BtsI	GCAGTG	1 cut(s)	840
BtsIMutI	CAGTG	2 cut(s)	415, 840
BveI	ACCTGC	1 cut(s)	838
Cac8I	GCNNGC	4 cut(s)	53, 594, 786, 806
CaiI	CAGNNNCTG	3 cut(s)	479, 764, 830
Cfr13I	GGNCC	3 cut(s)	241, 705, 827
CsiI	ACCWGGT	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	432
CviAII	CATG	2 cut(s)	593, 658
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	3 cut(s)	108, 381, 765
DpnI	GATC	3 cut(s)	9, 76, 453
DpnII	GATC	3 cut(s)	7, 74, 451
DraIII	CACNNNGTG	1 cut(s)	16
Eam1104I	CTCTTC	2 cut(s)	168, 582
EarI	CTCTTC	2 cut(s)	168, 582
Eco31I	GGTCTC	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	241, 827
Eco57I	CTGAAG	2 cut(s)	183, 408
EcoO109I	RGGNCCY	2 cut(s)	241, 827
EcoRII	CCWGG	4 cut(s)	12, 70, 210, 823
EcoT22I	ATGCAT	2 cut(s)	598, 637
FaeI	CATG	2 cut(s)	596, 661
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	2 cut(s)	592, 657
FbaI	TGATCA	1 cut(s)	7
FokI	GGATG	2 cut(s)	622, 635
FspBI	CTAG	2 cut(s)	494, 531
GsuI	CTGGAG	1 cut(s)	807
HaeIII	GGCC	2 cut(s)	500, 707
HapII	CCGG	1 cut(s)	664
Hin1II	CATG	2 cut(s)	596, 661
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	2 cut(s)	184, 838
HpaII	CCGG	1 cut(s)	664
HphI	GGTGA	2 cut(s)	17, 626
Hpy166II	GTNNAC	2 cut(s)	28, 813
Hpy188I	TCNGA	4 cut(s)	183, 189, 388, 520
Hpy188III	TCNNGA	2 cut(s)	586, 848
Hpy8I	GTNNAC	2 cut(s)	28, 813
Hpy99I	CGWCG	1 cut(s)	729
HpyAV	CCTTC	3 cut(s)	145, 304, 723
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	2 cut(s)	484, 724
HpyF10VI	GCNNNNNNNGC	6 cut(s)	261, 473, 536, 755, 758, 790
HpyF3I	CTNAG	3 cut(s)	108, 381, 765
HpySE526I	ACGT	2 cut(s)	484, 724
Hsp92II	CATG	2 cut(s)	596, 661
KpnI	GGTACC	1 cut(s)	435
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 74, 451
LguI	GCTCTTC	2 cut(s)	168, 582
LmnI	GCTCC	5 cut(s)	101, 536, 666, 826, 850
Lsp1109I	GCAGC	8 cut(s)	267, 485, 551, 655, 758, 761, 768, 770
LweI	GCATC	2 cut(s)	622, 644
MabI	ACCWGGT	1 cut(s)	12
MaeI	CTAG	2 cut(s)	494, 531
MaeII	ACGT	2 cut(s)	484, 724
MaeIII	GTNAC	3 cut(s)	485, 614, 835
MalI	GATC	3 cut(s)	9, 76, 453
MbiI	CCGCTC	1 cut(s)	552
MboI	GATC	3 cut(s)	7, 74, 451
MfeI	CAATTG	1 cut(s)	399
MflI	RGATCY	1 cut(s)	74
MluCI	AATT	7 cut(s)	232, 269, 321, 330, 399, 564, 855
MlyI	GAGTC	1 cut(s)	832
MmeI	TCCRAC	1 cut(s)	398
Mph1103I	ATGCAT	2 cut(s)	598, 637
MseI	TTAA	4 cut(s)	135, 228, 266, 569
MspA1I	CMGCKG	2 cut(s)	258, 476
MspI	CCGG	1 cut(s)	664
MspR9I	CCNGG	5 cut(s)	14, 72, 212, 665, 825
MunI	CAATTG	1 cut(s)	399
MvaI	CCWGG	4 cut(s)	14, 72, 212, 825
MwoI	GCNNNNNNNGC	6 cut(s)	261, 473, 536, 755, 758, 790
NciI	CCSGG	1 cut(s)	665
NdeII	GATC	3 cut(s)	7, 74, 451
NlaIII	CATG	2 cut(s)	596, 661
NlaIV	GGNNCC	3 cut(s)	243, 433, 852
NmuCI	GTSAC	3 cut(s)	485, 614, 835
NsiI	ATGCAT	2 cut(s)	598, 637
NspI	RCATGY	1 cut(s)	596
PaeI	GCATGC	1 cut(s)	596
PciSI	GCTCTTC	2 cut(s)	168, 582
PfeI	GAWTC	1 cut(s)	184
PfoI	TCCNGGA	1 cut(s)	823
PleI	GAGTC	1 cut(s)	832
PpsI	GAGTC	1 cut(s)	832
PpuMI	RGGWCCY	2 cut(s)	241, 827
Psp5II	RGGWCCY	2 cut(s)	241, 827
Psp6I	CCWGG	4 cut(s)	12, 70, 210, 823
PspGI	CCWGG	4 cut(s)	12, 70, 210, 823
PspN4I	GGNNCC	3 cut(s)	243, 433, 852
PspPI	GGNCC	3 cut(s)	241, 705, 827
PspPPI	RGGWCCY	2 cut(s)	241, 827
PsrI	GAACNNNNNNTAC	2 cut(s)	474, 506
PstI	CTGCAG	2 cut(s)	786, 835
PstNI	CAGNNNCTG	3 cut(s)	479, 764, 830
PsuI	RGATCY	1 cut(s)	74
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
SapI	GCTCTTC	2 cut(s)	168, 582
SaqAI	TTAA	4 cut(s)	135, 228, 266, 569
Sau3AI	GATC	3 cut(s)	7, 74, 451
Sau96I	GGNCC	3 cut(s)	241, 705, 827
SchI	GAGTC	1 cut(s)	832
ScrFI	CCNGG	5 cut(s)	14, 72, 212, 665, 825
SexAI	ACCWGGT	1 cut(s)	12
SfaNI	GCATC	2 cut(s)	622, 644
SfcI	CTRYAG	4 cut(s)	81, 156, 782, 831
SinI	GGWCC	2 cut(s)	241, 827
SmlI	CTYRAG	1 cut(s)	586
SmoI	CTYRAG	1 cut(s)	586
SphI	GCATGC	1 cut(s)	596
Sse9I	AATT	7 cut(s)	232, 269, 321, 330, 399, 564, 855
SsiI	CCGC	4 cut(s)	31, 258, 476, 550
SspMI	CTAG	2 cut(s)	494, 531
StyD4I	CCNGG	5 cut(s)	12, 70, 210, 663, 823
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	2 cut(s)	487, 727
TaqI	TCGA	2 cut(s)	457, 727
TasI	AATT	7 cut(s)	232, 269, 321, 330, 399, 564, 855
TauI	GCSGC	2 cut(s)	479, 552
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	4 cut(s)	135, 228, 266, 569
Tru9I	TTAA	4 cut(s)	135, 228, 266, 569
TscAI	CASTG	2 cut(s)	415, 840
TseFI	GTSAC	3 cut(s)	485, 614, 835
TseI	GCWGC	8 cut(s)	255, 473, 539, 668, 746, 749, 758, 781
Tsp45I	GTSAC	3 cut(s)	485, 614, 835
TspDTI	ATGAA	1 cut(s)	646
TspRI	CASTG	2 cut(s)	415, 840
VpaK11BI	GGWCC	2 cut(s)	241, 827
XapI	RAATTY	3 cut(s)	232, 269, 330
XceI	RCATGY	1 cut(s)	596
XspI	CTAG	2 cut(s)	494, 531
Zsp2I	ATGCAT	2 cut(s)	598, 637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.