Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004910

Physical Location & Seq

Genomic Coordinates Reverse (-)

2702382 .. 2708215

Gene Structure 5834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG042600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGACCGCTTTGAGTATCCAGCTCACATTCACTCAGCTTGTGAAGAAGAAGAAGAAGACTTTTCAGATAGAGAGAACCAAAAAAATTTCAGAGAATTCCAAAGCAAAAATTCTAGGTCTTGTCCAGGAGCTTTTGTTTCAGTGAGAATGAGTGATCACCTGGTGTTGTGTGTTGACCGCTTCACAAAACCTGAAAATTCGCAATCAGTGGTGCAAGGGACTGAGACTCCAGGATCTTCTTCTCTAGAGGCCTCATCCTCCCAATCGGCTGAGATACCCAGCTGTGCAATTGATATCAAGGGAACGGGGGAGAATGTTGTATCAGAAGAAGAGGAGCCACTGATTCAAACTGTTGAATGTCGCATTTGCCAGGAAGAGGATGGCGTTAGCAATTTGGAGGTCCCCTGTGCTTGCAGTGGCAGCTTAAAATATGCTCATAGAAAATGTGTCCAGAGGTGGTGCAATGAGAAGGGAGATATTATTTGTGAAATCTGTCATCAGCCTTACCAACCTGGTTATACTGCCCCATCACCTCCCCCTCAATCTGACGACACTACTATTGACATCAGTGAGGGCTGGACAATCTCTGGTACCCCCTTGGATTTACGTGATCCTCGACTATTGGCAATGGCAGCGGCAGAACGTCACTTTCTTGAATCTGAATATGATGAGTATGCTGATACAAGTGCTAATGGAGCAGCTTTTTGCCGCTCTGCTGCTCTAATTTTAATGGCTCTTCTACTCCTGAGGCATGCTTTGACTCTTCCCAATGGTGATGGTGATGGTGATGATGATGATGCTTCTACATTTTTCTCTCTTTTCTTGCTCCGAGCTGCTGGTTTTCTTCTCCCCTGCTACATTATGGCCTGGGCCATCAGCATATTACAACGTCGAAGGCAAAGACAGGTTAGTTCTCGGCTTTGCTGTTTTTGGAGCAACAAATTCTACTCAATTTTTCTCTTTTCTCTTTTCTTTTTTGACCAAAAGAAGATCACATCTATGAGATTGGTTCCATCAGGAAGCCTGAATGGGATTTGTTCATGCTTCTATTACACTGAAAGAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070647 GO:0071704 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

355

Amino Acids

39.8

Weight (kDa)

4.79

Isoelectric Point (pI)

62.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	120 - 165	5e-13	RING-variant domain
DUF3675	PF12428	171 - 292	2.7e-44	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47550 AT3G47550 AT3G47550 AT3G47550
fragaria_vesca	FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930
malus_domestica	MD06G1193400.v1.1 MD14G1200500.v1.1
prunus_persica	Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1
pyrus_communis	pycom06g17150 pycom14g16620
rosa_chinensis	RchiOBHm_Chr7g0181451
rosa_laevigata	RLG00000005193
rosa_multiflora	Rmu_sc0004621.1_g000021
rosa_roxburghii	Rroxscaffold_3G00271990
rosa_rugosa	Rorug06G0441300 Rorug06G0441400 Rorug06G0441400
rosa_samantha	Rh7BG042600 Rh7CG044400
rosa_wichuraiana	Rw7G003590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	590
AccB1I	GGYRCC	1 cut(s)	590
AccBSI	CCGCTC	1 cut(s)	711
AciI	CCGC	4 cut(s)	7, 178, 635, 709
AclWI	GGATC	2 cut(s)	241, 605
AcsI	RAATTY	5 cut(s)	85, 95, 109, 196, 941
AdeI	CACNNNGTG	1 cut(s)	163
AfaI	GTAC	1 cut(s)	592
AfiI	CCNNNNNNNGG	1 cut(s)	376
AgsI	TTSAA	3 cut(s)	347, 356, 656
AjnI	CCWGG	6 cut(s)	124, 159, 229, 369, 511, 866
AluBI	AGCT	7 cut(s)	23, 38, 131, 282, 423, 701, 833
AluI	AGCT	7 cut(s)	23, 38, 131, 282, 423, 701, 833
Alw26I	GTCTC	1 cut(s)	218
AlwI	GGATC	2 cut(s)	241, 605
AoxI	GGCC	3 cut(s)	249, 864, 870
ApeKI	GCWGC	5 cut(s)	420, 632, 698, 716, 833
ApoI	RAATTY	5 cut(s)	85, 95, 109, 196, 941
Asp718I	GGTACC	1 cut(s)	590
AspS9I	GGNCC	3 cut(s)	4, 400, 870
AsuHPI	GGTGA	5 cut(s)	149, 522, 785, 791, 797
AvaII	GGWCC	2 cut(s)	4, 400
AxyI	CCTNAGG	1 cut(s)	746
BanI	GGYRCC	1 cut(s)	590
BbsI	GAAGAC	1 cut(s)	63
BbvI	GCAGC	5 cut(s)	432, 644, 703, 710, 820
BccI	CCATC	6 cut(s)	374, 535, 770, 776, 881, 1021
BciT130I	CCWGG	6 cut(s)	126, 161, 231, 371, 513, 868
BciVI	GTATCC	1 cut(s)	27
BclI	TGATCA	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	2 cut(s)	114, 245
BfuI	GTATCC	1 cut(s)	27
BisI	GCNGC	7 cut(s)	421, 633, 636, 699, 709, 717, 834
BlsI	GCNGC	7 cut(s)	422, 634, 637, 700, 710, 718, 835
Bme1390I	CCNGG	6 cut(s)	126, 161, 231, 371, 513, 868
Bme18I	GGWCC	2 cut(s)	4, 400
BmgT120I	GGNCC	3 cut(s)	4, 400, 870
BmiI	GGNNCC	4 cut(s)	336, 402, 592, 1011
BmrFI	CCNGG	6 cut(s)	126, 161, 231, 371, 513, 868
BmsI	GCATC	1 cut(s)	787
BpiI	GAAGAC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	213
BsaAI	YACGTR	1 cut(s)	608
BsaJI	CCNNGG	2 cut(s)	597, 867
BsaXI	ACNNNNNCTCC	4 cut(s)	120, 150, 211, 241
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse21I	CCTNAGG	1 cut(s)	746
Bse3DI	GCAATG	2 cut(s)	469, 633
BseBI	CCWGG	6 cut(s)	126, 161, 231, 371, 513, 868
BseDI	CCNNGG	2 cut(s)	597, 867
BseGI	GGATG	2 cut(s)	254, 385
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMI	GCAATG	2 cut(s)	469, 633
BseMII	CTCAG	4 cut(s)	48, 213, 261, 737
BseRI	GAGGAG	1 cut(s)	347
BseXI	GCAGC	5 cut(s)	432, 644, 703, 710, 820
BseYI	CCCAGC	1 cut(s)	278
BshFI	GGCC	3 cut(s)	251, 866, 872
BshNI	GGYRCC	1 cut(s)	590
BslFI	GGGAC	2 cut(s)	232, 386
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmAI	GTCTC	1 cut(s)	218
BsmFI	GGGAC	2 cut(s)	232, 386
BsnI	GGCC	3 cut(s)	251, 866, 872
Bsp143I	GATC	4 cut(s)	154, 233, 610, 990
BspACI	CCGC	4 cut(s)	7, 178, 635, 709
BspANI	GGCC	3 cut(s)	251, 866, 872
BspCNI	CTCAG	4 cut(s)	47, 214, 262, 738
BspLI	GGNNCC	4 cut(s)	336, 402, 592, 1011
BspPI	GGATC	2 cut(s)	241, 605
BspQI	GCTCTTC	1 cut(s)	741
BspT107I	GGYRCC	1 cut(s)	590
BsrBI	CCGCTC	1 cut(s)	711
BsrDI	GCAATG	2 cut(s)	469, 633
BssECI	CCNNGG	2 cut(s)	597, 867
BssMI	GATC	4 cut(s)	154, 233, 610, 990
BssT1I	CCWWGG	1 cut(s)	597
Bst2UI	CCWGG	6 cut(s)	126, 161, 231, 371, 513, 868
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	4 cut(s)	324, 369, 741, 768
BstBAI	YACGTR	1 cut(s)	608
BstC8I	GCNNGC	2 cut(s)	412, 753
BstDEI	CTNAG	4 cut(s)	34, 222, 270, 746
BstF5I	GGATG	2 cut(s)	254, 385
BstKTI	GATC	4 cut(s)	157, 236, 613, 993
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	4 cut(s)	154, 233, 610, 990
BstMWI	GCNNNNNNNGC	3 cut(s)	420, 632, 695
BstNI	CCWGG	6 cut(s)	126, 161, 231, 371, 513, 868
BstNSI	RCATGY	1 cut(s)	755
BstSCI	CCNGG	6 cut(s)	124, 159, 229, 369, 511, 866
BstV1I	GCAGC	5 cut(s)	432, 644, 703, 710, 820
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	233
Bsu36I	CCTNAGG	1 cut(s)	746
BsuI	GTATCC	1 cut(s)	27
BsuRI	GGCC	3 cut(s)	251, 866, 872
BtsCI	GGATG	2 cut(s)	254, 385
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	6 cut(s)	147, 213, 338, 421, 574, 1053
Cac8I	GCNNGC	2 cut(s)	412, 753
Cfr13I	GGNCC	3 cut(s)	4, 400, 870
CsiI	ACCWGGT	2 cut(s)	159, 511
Csp6I	GTAC	1 cut(s)	591
CviAII	CATG	2 cut(s)	752, 1041
CviQI	GTAC	1 cut(s)	591
DdeI	CTNAG	4 cut(s)	34, 222, 270, 746
DpnI	GATC	4 cut(s)	156, 235, 612, 992
DpnII	GATC	4 cut(s)	154, 233, 610, 990
DraIII	CACNNNGTG	1 cut(s)	163
Eam1104I	CTCTTC	4 cut(s)	324, 369, 741, 768
EarI	CTCTTC	4 cut(s)	324, 369, 741, 768
Eco130I	CCWWGG	1 cut(s)	597
Eco147I	AGGCCT	1 cut(s)	251
Eco32I	GATATC	1 cut(s)	295
Eco47I	GGWCC	2 cut(s)	4, 400
Eco81I	CCTNAGG	1 cut(s)	746
EcoO109I	RGGNCCY	1 cut(s)	400
EcoRI	GAATTC	1 cut(s)	95
EcoRII	CCWGG	6 cut(s)	124, 159, 229, 369, 511, 866
EcoRV	GATATC	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	597
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	2 cut(s)	755, 1044
FaqI	GGGAC	2 cut(s)	232, 386
FatI	CATG	2 cut(s)	751, 1040
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	7 cut(s)	421, 633, 636, 699, 709, 717, 834
FokI	GGATG	2 cut(s)	241, 392
Fsp4HI	GCNGC	7 cut(s)	421, 633, 636, 699, 709, 717, 834
FspBI	CTAG	2 cut(s)	114, 245
GluI	GCNGC	7 cut(s)	421, 633, 636, 699, 709, 717, 834
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	3 cut(s)	251, 866, 872
Hin1II	CATG	2 cut(s)	755, 1044
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	4 cut(s)	226, 343, 656, 760
HphI	GGTGA	5 cut(s)	149, 522, 785, 791, 797
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	6 cut(s)	67, 92, 325, 547, 661, 830
Hpy188III	TCNNGA	5 cut(s)	245, 451, 653, 745, 1017
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	894
HpyAV	CCTTC	2 cut(s)	463, 888
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4IV	ACGT	3 cut(s)	607, 643, 889
HpyCH4V	TGCA	4 cut(s)	214, 287, 414, 462
HpyF10VI	GCNNNNNNNGC	3 cut(s)	420, 632, 695
HpyF3I	CTNAG	4 cut(s)	34, 222, 270, 746
HpySE526I	ACGT	3 cut(s)	607, 643, 889
Hsp92II	CATG	2 cut(s)	755, 1044
KpnI	GGTACC	1 cut(s)	594
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	4 cut(s)	154, 233, 610, 990
LguI	GCTCTTC	1 cut(s)	741
LmnI	GCTCC	5 cut(s)	128, 334, 695, 831, 933
Lsp1109I	GCAGC	5 cut(s)	432, 644, 703, 710, 820
LweI	GCATC	1 cut(s)	787
MabI	ACCWGGT	2 cut(s)	159, 511
MaeI	CTAG	2 cut(s)	114, 245
MaeII	ACGT	3 cut(s)	607, 643, 889
MaeIII	GTNAC	1 cut(s)	644
MalI	GATC	4 cut(s)	156, 235, 612, 992
MbiI	CCGCTC	1 cut(s)	711
MboI	GATC	4 cut(s)	154, 233, 610, 990
MfeI	CAATTG	1 cut(s)	288
MflI	RGATCY	1 cut(s)	233
MluCI	AATT	9 cut(s)	85, 95, 109, 196, 288, 391, 723, 941, 951
MlyI	GAGTC	2 cut(s)	220, 754
MseI	TTAA	2 cut(s)	425, 728
MslI	CAYNNNNRTG	1 cut(s)	998
MspA1I	CMGCKG	2 cut(s)	282, 635
MspR9I	CCNGG	6 cut(s)	126, 161, 231, 371, 513, 868
MunI	CAATTG	1 cut(s)	288
MvaI	CCWGG	6 cut(s)	126, 161, 231, 371, 513, 868
MwoI	GCNNNNNNNGC	3 cut(s)	420, 632, 695
NdeII	GATC	4 cut(s)	154, 233, 610, 990
NlaIII	CATG	2 cut(s)	755, 1044
NlaIV	GGNNCC	4 cut(s)	336, 402, 592, 1011
NmeAIII	GCCGAG	1 cut(s)	895
NmuCI	GTSAC	1 cut(s)	644
NspI	RCATGY	1 cut(s)	755
PaeI	GCATGC	1 cut(s)	755
PceI	AGGCCT	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	741
PcsI	WCGNNNNNNNCGW	1 cut(s)	613
PfeI	GAWTC	2 cut(s)	343, 656
PfoI	TCCNGGA	2 cut(s)	124, 229
PkrI	GCNGC	7 cut(s)	422, 634, 637, 700, 710, 718, 835
PleI	GAGTC	2 cut(s)	220, 754
PpsI	GAGTC	2 cut(s)	220, 754
Ppu21I	YACGTR	1 cut(s)	608
PpuMI	RGGWCCY	1 cut(s)	400
Psp5II	RGGWCCY	1 cut(s)	400
Psp6I	CCWGG	6 cut(s)	124, 159, 229, 369, 511, 866
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	6 cut(s)	124, 159, 229, 369, 511, 866
PspN4I	GGNNCC	4 cut(s)	336, 402, 592, 1011
PspPI	GGNCC	3 cut(s)	4, 400, 870
PspPPI	RGGWCCY	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	282
RsaI	GTAC	1 cut(s)	592
RsaNI	GTAC	1 cut(s)	591
RseI	CAYNNNNRTG	1 cut(s)	998
SapI	GCTCTTC	1 cut(s)	741
SaqAI	TTAA	2 cut(s)	425, 728
SatI	GCNGC	7 cut(s)	421, 633, 636, 699, 709, 717, 834
Sau3AI	GATC	4 cut(s)	154, 233, 610, 990
Sau96I	GGNCC	3 cut(s)	4, 400, 870
SchI	GAGTC	2 cut(s)	220, 754
ScrFI	CCNGG	6 cut(s)	126, 161, 231, 371, 513, 868
SexAI	ACCWGGT	2 cut(s)	159, 511
SfaNI	GCATC	1 cut(s)	787
SinI	GGWCC	2 cut(s)	4, 400
SmiMI	CAYNNNNRTG	1 cut(s)	998
SphI	GCATGC	1 cut(s)	755
Sse9I	AATT	9 cut(s)	85, 95, 109, 196, 288, 391, 723, 941, 951
SseBI	AGGCCT	1 cut(s)	251
SsiI	CCGC	4 cut(s)	7, 178, 635, 709
SspMI	CTAG	2 cut(s)	114, 245
StuI	AGGCCT	1 cut(s)	251
StyD4I	CCNGG	6 cut(s)	124, 159, 229, 369, 511, 866
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	1 cut(s)	352
TaiI	ACGT	3 cut(s)	610, 646, 892
TaqI	TCGA	2 cut(s)	616, 892
TasI	AATT	9 cut(s)	85, 95, 109, 196, 288, 391, 723, 941, 951
TauI	GCSGC	2 cut(s)	638, 711
TfiI	GAWTC	2 cut(s)	343, 656
Tru1I	TTAA	2 cut(s)	425, 728
Tru9I	TTAA	2 cut(s)	425, 728
TscAI	CASTG	6 cut(s)	147, 213, 345, 421, 574, 1060
TseFI	GTSAC	1 cut(s)	644
TseI	GCWGC	5 cut(s)	420, 632, 698, 716, 833
Tsp45I	GTSAC	1 cut(s)	644
TspDTI	ATGAA	1 cut(s)	1029
TspRI	CASTG	6 cut(s)	147, 213, 345, 421, 574, 1060
VpaK11BI	GGWCC	2 cut(s)	4, 400
XapI	RAATTY	5 cut(s)	85, 95, 109, 196, 941
XbaI	TCTAGA	1 cut(s)	244
XceI	RCATGY	1 cut(s)	755
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377
XspI	CTAG	2 cut(s)	114, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.