Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004910

Physical Location & Seq

Genomic Coordinates Forward (+)

8445464 .. 8449543

Gene Structure 4080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g14930.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAGTGATCACCTGGTGTTGTGTGTTGACCACTTCACGAAACCTGACAGTTTGCAAGCACCGAAAGGGACTGAGACTCCAGGATCTTCTCTGGAGGCCTCGTCGTCATCATCGTCCCAATCGGCTGAGATACCGAGTTGTGCAATTGATATTAAGGGAGCAGGGGAGAATGCTGTATCTGAAGAAGAGGAGCCGCTGATTCAGACTGTTGAATGTCGCATTTGCCAGGAAGAGGATGGTGTTAGTAATCTGGAGGTCCCCTGTGCTTGCAGTGGCAGCTTAAAATATGCTCATAGAAAATGTGTTCAGAGGTGGTGCAATGAGAAGGGAGATATCATTTGTGAAATTTGTCATCAGCCTTACCAACCTGGTTATACTGCCCCATCACCTCCTCCTCAGTCTGAAGACACTACTATTGACATCAGTGAGGCCTGGACAATCTCTGGTACCCCCTTGGATTTACGTGATCCTCGACTACTGGCAATGGCAGCGGCAGAACGTCACTTTCTTGAATCTGAATATGATGAGTATGCTGATACAAGTGCTAATGGAGCAGCTTTTTGCCGCTCTGCTGCTCTAATTTTAATGGCTCTTCTACTCTTAAGGCATGCTTTGACTCTTCCCAATGGTGACGGGGATGATGATGATGCTTCTACATTTTTCTCTCTTTTCTTACTCCGAGCTGCTGGTTTTCTTCTTCCCTGCTACATTATGGCCTGGGCCATCAGTATATTACAACGTCGAAGGCAAAGACAGGAAGCAGCAGCACTTGCAGCAACTGAGGTTGCATTTATGCTGCAGGCAGGGCAACGTCGTGGATTGCAGTTCACAATAGCTTCAGGACCTGCTGTGACTCCCCATCAGGAGCCAATTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070647 GO:0071704 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

293

Amino Acids

31.67

Weight (kDa)

4.65

Isoelectric Point (pI)

62.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	72 - 117	3.8e-13	RING-variant domain
DUF3675	PF12428	123 - 242	1.4e-45	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47550 AT3G47550 AT3G47550 AT3G47550
fragaria_vesca	FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930
malus_domestica	MD06G1193400.v1.1 MD14G1200500.v1.1
prunus_persica	Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1
pyrus_communis	pycom06g17150 pycom14g16620
rosa_chinensis	RchiOBHm_Chr7g0181451
rosa_laevigata	RLG00000005193
rosa_multiflora	Rmu_sc0004621.1_g000021
rosa_roxburghii	Rroxscaffold_3G00271990
rosa_rugosa	Rorug06G0441300 Rorug06G0441400 Rorug06G0441400
rosa_samantha	Rh7BG042600 Rh7CG044400
rosa_wichuraiana	Rw7G003590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	853
Acc65I	GGTACC	1 cut(s)	446
AccB1I	GGYRCC	1 cut(s)	446
AccBSI	CCGCTC	1 cut(s)	567
AciI	CCGC	3 cut(s)	194, 491, 565
AclWI	GGATC	2 cut(s)	91, 461
AcsI	RAATTY	1 cut(s)	345
AcuI	CTGAAG	3 cut(s)	201, 423, 822
AdeI	CACNNNGTG	1 cut(s)	16
AfaI	GTAC	1 cut(s)	448
AfiI	CCNNNNNNNGG	1 cut(s)	232
AflII	CTTAAG	1 cut(s)	601
AgsI	TTSAA	3 cut(s)	212, 512, 875
AjnI	CCWGG	6 cut(s)	12, 79, 225, 367, 431, 716
AluBI	AGCT	4 cut(s)	279, 557, 683, 836
AluI	AGCT	4 cut(s)	279, 557, 683, 836
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	2 cut(s)	91, 461
AlwNI	CAGNNNCTG	2 cut(s)	779, 845
AoxI	GGCC	4 cut(s)	96, 429, 714, 720
ApeKI	GCWGC	9 cut(s)	276, 488, 554, 572, 683, 761, 764, 773, 796
ApoI	RAATTY	1 cut(s)	345
Asp718I	GGTACC	1 cut(s)	446
AspS9I	GGNCC	3 cut(s)	256, 720, 842
AsuHPI	GGTGA	2 cut(s)	378, 641
AvaII	GGWCC	2 cut(s)	256, 842
BanI	GGYRCC	1 cut(s)	446
BbsI	GAAGAC	1 cut(s)	411
BbvI	GCAGC	9 cut(s)	288, 500, 559, 566, 670, 773, 776, 783, 785
BccI	CCATC	4 cut(s)	230, 391, 731, 867
BciT130I	CCWGG	6 cut(s)	14, 81, 227, 369, 433, 718
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	797
BfrI	CTTAAG	1 cut(s)	601
BfuAI	ACCTGC	1 cut(s)	853
Bme1390I	CCNGG	6 cut(s)	14, 81, 227, 369, 433, 718
Bme18I	GGWCC	2 cut(s)	256, 842
BmgT120I	GGNCC	3 cut(s)	256, 720, 842
BmiI	GGNNCC	4 cut(s)	192, 258, 448, 867
BmrFI	CCNGG	6 cut(s)	14, 81, 227, 369, 433, 718
BmsI	GCATC	1 cut(s)	637
BpiI	GAAGAC	1 cut(s)	411
BpmI	CTGGAG	3 cut(s)	63, 113, 272
BsaAI	YACGTR	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	453, 717
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 86, 91, 116
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse1I	ACTGG	1 cut(s)	483
Bse3DI	GCAATG	2 cut(s)	325, 489
BseBI	CCWGG	6 cut(s)	14, 81, 227, 369, 433, 718
BseDI	CCNNGG	2 cut(s)	453, 717
BseGI	GGATG	2 cut(s)	241, 643
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMI	GCAATG	2 cut(s)	325, 489
BseMII	CTCAG	4 cut(s)	63, 117, 410, 771
BseNI	ACTGG	1 cut(s)	483
BseRI	GAGGAG	3 cut(s)	203, 381, 384
BseXI	GCAGC	9 cut(s)	288, 500, 559, 566, 670, 773, 776, 783, 785
BshFI	GGCC	4 cut(s)	98, 431, 716, 722
BshNI	GGYRCC	1 cut(s)	446
BslFI	GGGAC	3 cut(s)	82, 100, 242
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	68
BsmFI	GGGAC	3 cut(s)	82, 100, 242
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	4 cut(s)	98, 431, 716, 722
Bsp143I	GATC	3 cut(s)	7, 83, 466
BspACI	CCGC	3 cut(s)	194, 491, 565
BspANI	GGCC	4 cut(s)	98, 431, 716, 722
BspCNI	CTCAG	4 cut(s)	64, 118, 409, 772
BspLI	GGNNCC	4 cut(s)	192, 258, 448, 867
BspMAI	CTGCAG	1 cut(s)	801
BspMI	ACCTGC	1 cut(s)	853
BspPI	GGATC	2 cut(s)	91, 461
BspQI	GCTCTTC	1 cut(s)	597
BspT107I	GGYRCC	1 cut(s)	446
BspTI	CTTAAG	1 cut(s)	601
BsrBI	CCGCTC	1 cut(s)	567
BsrDI	GCAATG	2 cut(s)	325, 489
BsrI	ACTGG	1 cut(s)	483
BssECI	CCNNGG	2 cut(s)	453, 717
BssMI	GATC	3 cut(s)	7, 83, 466
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	6 cut(s)	14, 81, 227, 369, 433, 718
Bst4CI	ACNGT	2 cut(s)	50, 208
Bst6I	CTCTTC	4 cut(s)	180, 225, 597, 624
BstAFI	CTTAAG	1 cut(s)	601
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstBAI	YACGTR	1 cut(s)	464
BstC8I	GCNNGC	4 cut(s)	57, 268, 609, 801
BstDEI	CTNAG	4 cut(s)	72, 126, 396, 780
BstF5I	GGATG	2 cut(s)	241, 643
BstKTI	GATC	3 cut(s)	10, 86, 469
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	3 cut(s)	7, 83, 466
BstMWI	GCNNNNNNNGC	6 cut(s)	276, 488, 551, 770, 773, 805
BstNI	CCWGG	6 cut(s)	14, 81, 227, 369, 433, 718
BstNSI	RCATGY	1 cut(s)	611
BstSCI	CCNGG	6 cut(s)	12, 79, 225, 367, 431, 716
BstSFI	CTRYAG	1 cut(s)	797
BstV1I	GCAGC	9 cut(s)	288, 500, 559, 566, 670, 773, 776, 783, 785
BstV2I	GAAGAC	1 cut(s)	411
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BsuRI	GGCC	4 cut(s)	98, 431, 716, 722
BtsCI	GGATG	2 cut(s)	241, 643
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	2 cut(s)	277, 430
BveI	ACCTGC	1 cut(s)	853
Cac8I	GCNNGC	4 cut(s)	57, 268, 609, 801
CaiI	CAGNNNCTG	2 cut(s)	779, 845
Cfr13I	GGNCC	3 cut(s)	256, 720, 842
CsiI	ACCWGGT	2 cut(s)	12, 367
Csp6I	GTAC	1 cut(s)	447
CviAII	CATG	1 cut(s)	608
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	4 cut(s)	72, 126, 396, 780
DpnI	GATC	3 cut(s)	9, 85, 468
DpnII	GATC	3 cut(s)	7, 83, 466
DraIII	CACNNNGTG	1 cut(s)	16
Eam1104I	CTCTTC	4 cut(s)	180, 225, 597, 624
EarI	CTCTTC	4 cut(s)	180, 225, 597, 624
Eco130I	CCWWGG	1 cut(s)	453
Eco147I	AGGCCT	2 cut(s)	98, 431
Eco32I	GATATC	1 cut(s)	334
Eco47I	GGWCC	2 cut(s)	256, 842
Eco57I	CTGAAG	3 cut(s)	201, 423, 822
EcoO109I	RGGNCCY	2 cut(s)	256, 842
EcoRII	CCWGG	6 cut(s)	12, 79, 225, 367, 431, 716
EcoRV	GATATC	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	1 cut(s)	611
FaiI	YATR	9 cut(s)	288, 294, 375, 522, 531, 609, 713, 731, 794
FalI	AAGNNNNNCTT	2 cut(s)	595, 627
FaqI	GGGAC	3 cut(s)	82, 100, 242
FatI	CATG	1 cut(s)	607
FbaI	TGATCA	1 cut(s)	7
FokI	GGATG	2 cut(s)	248, 650
GsuI	CTGGAG	3 cut(s)	63, 113, 272
HaeIII	GGCC	4 cut(s)	98, 431, 716, 722
Hin1II	CATG	1 cut(s)	611
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	5 cut(s)	76, 199, 512, 616, 853
HphI	GGTGA	2 cut(s)	378, 641
Hpy166II	GTNNAC	2 cut(s)	28, 828
Hpy188I	TCNGA	6 cut(s)	181, 204, 309, 403, 517, 680
Hpy188III	TCNNGA	6 cut(s)	37, 92, 251, 509, 840, 863
Hpy8I	GTNNAC	2 cut(s)	28, 828
Hpy99I	CGWCG	3 cut(s)	106, 744, 816
HpyAV	CCTTC	2 cut(s)	319, 738
HpyCH4III	ACNGT	2 cut(s)	50, 208
HpyCH4IV	ACGT	4 cut(s)	463, 499, 739, 811
HpyCH4V	TGCA	8 cut(s)	55, 143, 270, 318, 773, 788, 799, 823
HpyF10VI	GCNNNNNNNGC	6 cut(s)	276, 488, 551, 770, 773, 805
HpyF3I	CTNAG	4 cut(s)	72, 126, 396, 780
HpySE526I	ACGT	4 cut(s)	463, 499, 739, 811
Hsp92II	CATG	1 cut(s)	611
KpnI	GGTACC	1 cut(s)	450
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 83, 466
LguI	GCTCTTC	1 cut(s)	597
LmnI	GCTCC	4 cut(s)	158, 190, 551, 865
Lsp1109I	GCAGC	9 cut(s)	288, 500, 559, 566, 670, 773, 776, 783, 785
LweI	GCATC	1 cut(s)	637
MabI	ACCWGGT	2 cut(s)	12, 367
MaeII	ACGT	4 cut(s)	463, 499, 739, 811
MaeIII	GTNAC	3 cut(s)	500, 629, 850
MalI	GATC	3 cut(s)	9, 85, 468
MbiI	CCGCTC	1 cut(s)	567
MboI	GATC	3 cut(s)	7, 83, 466
MboII	GAAGA	9 cut(s)	78, 194, 197, 242, 416, 584, 611, 686, 689
MfeI	CAATTG	1 cut(s)	144
MflI	RGATCY	1 cut(s)	83
MluCI	AATT	4 cut(s)	144, 345, 579, 870
MlyI	GAGTC	3 cut(s)	70, 610, 847
MseI	TTAA	4 cut(s)	153, 281, 584, 602
MspA1I	CMGCKG	2 cut(s)	196, 491
MspCI	CTTAAG	1 cut(s)	601
MspR9I	CCNGG	6 cut(s)	14, 81, 227, 369, 433, 718
MunI	CAATTG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	6 cut(s)	14, 81, 227, 369, 433, 718
MwoI	GCNNNNNNNGC	6 cut(s)	276, 488, 551, 770, 773, 805
NdeII	GATC	3 cut(s)	7, 83, 466
NlaIII	CATG	1 cut(s)	611
NlaIV	GGNNCC	4 cut(s)	192, 258, 448, 867
NmuCI	GTSAC	3 cut(s)	500, 629, 850
NspI	RCATGY	1 cut(s)	611
PaeI	GCATGC	1 cut(s)	611
PceI	AGGCCT	2 cut(s)	98, 431
PciSI	GCTCTTC	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	2 cut(s)	110, 469
PctI	GAATGC	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	199, 512
PfoI	TCCNGGA	1 cut(s)	79
PleI	GAGTC	3 cut(s)	70, 610, 847
PpsI	GAGTC	3 cut(s)	70, 610, 847
Ppu21I	YACGTR	1 cut(s)	464
PpuMI	RGGWCCY	2 cut(s)	256, 842
Psp5II	RGGWCCY	2 cut(s)	256, 842
Psp6I	CCWGG	6 cut(s)	12, 79, 225, 367, 431, 716
PspGI	CCWGG	6 cut(s)	12, 79, 225, 367, 431, 716
PspN4I	GGNNCC	4 cut(s)	192, 258, 448, 867
PspPI	GGNCC	3 cut(s)	256, 720, 842
PspPPI	RGGWCCY	2 cut(s)	256, 842
PstI	CTGCAG	1 cut(s)	801
PstNI	CAGNNNCTG	2 cut(s)	779, 845
PsuI	RGATCY	1 cut(s)	83
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
SapI	GCTCTTC	1 cut(s)	597
SaqAI	TTAA	4 cut(s)	153, 281, 584, 602
Sau3AI	GATC	3 cut(s)	7, 83, 466
Sau96I	GGNCC	3 cut(s)	256, 720, 842
SchI	GAGTC	3 cut(s)	70, 610, 847
ScrFI	CCNGG	6 cut(s)	14, 81, 227, 369, 433, 718
SexAI	ACCWGGT	2 cut(s)	12, 367
SfaNI	GCATC	1 cut(s)	637
SfcI	CTRYAG	1 cut(s)	797
SinI	GGWCC	2 cut(s)	256, 842
SmlI	CTYRAG	1 cut(s)	601
SmoI	CTYRAG	1 cut(s)	601
SphI	GCATGC	1 cut(s)	611
Sse9I	AATT	4 cut(s)	144, 345, 579, 870
SseBI	AGGCCT	2 cut(s)	98, 431
SsiI	CCGC	3 cut(s)	194, 491, 565
StuI	AGGCCT	2 cut(s)	98, 431
StyD4I	CCNGG	6 cut(s)	12, 79, 225, 367, 431, 716
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	2 cut(s)	50, 208
TaiI	ACGT	4 cut(s)	466, 502, 742, 814
TaqI	TCGA	2 cut(s)	472, 742
TasI	AATT	4 cut(s)	144, 345, 579, 870
TauI	GCSGC	3 cut(s)	196, 494, 567
TfiI	GAWTC	2 cut(s)	199, 512
Tru1I	TTAA	4 cut(s)	153, 281, 584, 602
Tru9I	TTAA	4 cut(s)	153, 281, 584, 602
TscAI	CASTG	2 cut(s)	277, 430
TseFI	GTSAC	3 cut(s)	500, 629, 850
TseI	GCWGC	9 cut(s)	276, 488, 554, 572, 683, 761, 764, 773, 796
Tsp45I	GTSAC	3 cut(s)	500, 629, 850
TspRI	CASTG	2 cut(s)	277, 430
Vha464I	CTTAAG	1 cut(s)	601
VpaK11BI	GGWCC	2 cut(s)	256, 842
XapI	RAATTY	1 cut(s)	345
XceI	RCATGY	1 cut(s)	611
XcmI	CCANNNNNNNNNTGG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.