Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004910

Physical Location & Seq

Genomic Coordinates Reverse (-)

21198356 .. 21201146

Gene Structure 2791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17150.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGGTGATCACCTGGTGTTGTGTGTTGACCGCTTCACAAAACCTGAAGGCTTGCAAGGGAGTGAGACCCCAGGATCTTCTGTAGAGGGTTCATGCTCCCACTCTGCTGAGCTACCCACTTGTGCCATTGATGTTAAGGGAGTGGGGGAGAAGACTGTATCTGAAGAAGAAGAGCCTCTGATTCAGACGGTTGAATGTCGCATTTGCCAGGAAGAAGATAGCGTTAAGAATTTGGAGGTCCCCTGTTCTTGCAGTGGCAGCTTAAAATTTGCTCATAGGAAGTGTGTCCAGCGATGGTGCAATGAGAAGGGAGATATAATTTGTGAAATTTGTCATCAGCCATACCAACATGGTTATACTGCCCCACCACCTCCCCCTCAGTCCGAAGATACCACAATTGACATCAGTGATGGTTGGACAATCTCTGGTACTCCTTTGGATTTGCGTGATCCTCGACTATTAGCAATGGCAGCGGCTGAACGCCACATTCTAGAGGCCGAATATGATGAGTATGCTGACACAAATGCTAGTGGAGCAGCCTTTTGCCGCTCTGCTGCTCTAATTTTAATGGCTCTTCTCCTCTTGAGGCATGCGTTGACCCTTCCCAACGGTGACGGGGATGATGATGATGCATCCACCTTTTTTTCTCTTTTCTTGCTCCGGGCTGCTGGTTTTCTTCTCCCATGCTACATTATGGCTTGGGCCATCAGCATATTACAACGTCGAAGGCAAAGACAGGAAGCAGCAGCACTTGCGGCAACTGAGGTTGCATTTATGCTGCAGGCAGGGCAACGCAGGGGCTTGCAGTTCACAATAGCTCCGGGACCTGCAGTGACTCCCCATCAGGAGCCAATTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070647 GO:0071704 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

287

Amino Acids

31.2

Weight (kDa)

4.81

Isoelectric Point (pI)

55.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47550 AT3G47550 AT3G47550 AT3G47550
fragaria_vesca	FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930
malus_domestica	MD06G1193400.v1.1 MD14G1200500.v1.1
prunus_persica	Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1
pyrus_communis	pycom06g17150 pycom14g16620
rosa_chinensis	RchiOBHm_Chr7g0181451
rosa_laevigata	RLG00000005193
rosa_multiflora	Rmu_sc0004621.1_g000021
rosa_roxburghii	Rroxscaffold_3G00271990
rosa_rugosa	Rorug06G0441300 Rorug06G0441400 Rorug06G0441400
rosa_samantha	Rh7BG042600 Rh7CG044400
rosa_wichuraiana	Rw7G003590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	835
AccBSI	CCGCTC	1 cut(s)	549
AciI	CCGC	4 cut(s)	31, 473, 547, 755
AclWI	GGATC	2 cut(s)	82, 443
AcsI	RAATTY	3 cut(s)	229, 266, 327
AcuI	CTGAAG	2 cut(s)	66, 183
AdeI	CACNNNGTG	1 cut(s)	16
AfaI	GTAC	1 cut(s)	430
AgsI	TTSAA	1 cut(s)	194
AjnI	CCWGG	3 cut(s)	12, 70, 207
AluBI	AGCT	3 cut(s)	112, 261, 818
AluI	AGCT	3 cut(s)	112, 261, 818
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	2 cut(s)	82, 443
AlwNI	CAGNNNCTG	1 cut(s)	476
AoxI	GGCC	2 cut(s)	495, 702
ApeKI	GCWGC	8 cut(s)	258, 470, 536, 554, 665, 743, 746, 778
ApoI	RAATTY	3 cut(s)	229, 266, 327
AspS9I	GGNCC	3 cut(s)	238, 702, 824
AsuC2I	CCSGG	2 cut(s)	662, 822
AsuHPI	GGTGA	2 cut(s)	17, 623
AvaII	GGWCC	2 cut(s)	238, 824
BbsI	GAAGAC	1 cut(s)	158
BbvI	GCAGC	8 cut(s)	270, 482, 541, 548, 652, 755, 758, 765
BccI	CCATC	4 cut(s)	288, 404, 713, 849
BciT130I	CCWGG	3 cut(s)	14, 72, 209
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	2 cut(s)	662, 822
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	2 cut(s)	491, 528
BfmI	CTRYAG	3 cut(s)	81, 779, 828
BfuAI	ACCTGC	1 cut(s)	835
BlpI	GCTNAGC	1 cut(s)	108
Bme1390I	CCNGG	5 cut(s)	14, 72, 209, 662, 822
Bme18I	GGWCC	2 cut(s)	238, 824
BmgT120I	GGNCC	3 cut(s)	238, 702, 824
BmiI	GGNNCC	3 cut(s)	240, 825, 849
BmrFI	CCNGG	5 cut(s)	14, 72, 209, 662, 822
BmsI	GCATC	2 cut(s)	619, 641
BpiI	GAAGAC	1 cut(s)	158
Bpu1102I	GCTNAGC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	604
BpuMI	CCSGG	2 cut(s)	662, 822
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	70
BsaXI	ACNNNNNCTCC	2 cut(s)	802, 832
Bse3DI	GCAATG	2 cut(s)	307, 471
BseBI	CCWGG	3 cut(s)	14, 72, 209
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	2 cut(s)	625, 632
BseMI	GCAATG	2 cut(s)	307, 471
BseMII	CTCAG	3 cut(s)	99, 392, 753
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	8 cut(s)	270, 482, 541, 548, 652, 755, 758, 765
BshFI	GGCC	2 cut(s)	497, 704
BsiSI	CCGG	2 cut(s)	661, 821
BslFI	GGGAC	2 cut(s)	224, 837
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	224, 837
BsnI	GGCC	2 cut(s)	497, 704
Bso31I	GGTCTC	1 cut(s)	59
Bsp143I	GATC	3 cut(s)	7, 74, 448
Bsp1720I	GCTNAGC	1 cut(s)	108
BspACI	CCGC	4 cut(s)	31, 473, 547, 755
BspANI	GGCC	2 cut(s)	497, 704
BspCNI	CTCAG	3 cut(s)	100, 391, 754
BspLI	GGNNCC	3 cut(s)	240, 825, 849
BspMAI	CTGCAG	2 cut(s)	783, 832
BspMI	ACCTGC	1 cut(s)	835
BspPI	GGATC	2 cut(s)	82, 443
BspQI	GCTCTTC	2 cut(s)	165, 579
BspTNI	GGTCTC	1 cut(s)	59
BsrBI	CCGCTC	1 cut(s)	549
BsrDI	GCAATG	2 cut(s)	307, 471
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	3 cut(s)	7, 74, 448
Bst2UI	CCWGG	3 cut(s)	14, 72, 209
Bst4CI	ACNGT	3 cut(s)	157, 190, 611
Bst6I	CTCTTC	2 cut(s)	165, 579
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstC8I	GCNNGC	4 cut(s)	53, 591, 783, 803
BstDEI	CTNAG	3 cut(s)	108, 378, 762
BstF5I	GGATG	2 cut(s)	625, 632
BstKTI	GATC	3 cut(s)	10, 77, 451
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	3 cut(s)	7, 74, 448
BstMWI	GCNNNNNNNGC	6 cut(s)	258, 470, 533, 752, 755, 787
BstNI	CCWGG	3 cut(s)	14, 72, 209
BstNSI	RCATGY	1 cut(s)	593
BstSCI	CCNGG	5 cut(s)	12, 70, 207, 660, 820
BstSFI	CTRYAG	3 cut(s)	81, 779, 828
BstV1I	GCAGC	8 cut(s)	270, 482, 541, 548, 652, 755, 758, 765
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	74
BsuRI	GGCC	2 cut(s)	497, 704
BtgZI	GCGATG	1 cut(s)	307
BtsCI	GGATG	2 cut(s)	625, 632
BtsI	GCAGTG	2 cut(s)	259, 837
BtsIMutI	CAGTG	3 cut(s)	259, 412, 837
BveI	ACCTGC	1 cut(s)	835
Cac8I	GCNNGC	4 cut(s)	53, 591, 783, 803
CaiI	CAGNNNCTG	1 cut(s)	476
Cfr13I	GGNCC	3 cut(s)	238, 702, 824
CsiI	ACCWGGT	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	429
CviAII	CATG	4 cut(s)	93, 350, 590, 684
CviQI	GTAC	1 cut(s)	429
DdeI	CTNAG	3 cut(s)	108, 378, 762
DpnI	GATC	3 cut(s)	9, 76, 450
DpnII	GATC	3 cut(s)	7, 74, 448
DraIII	CACNNNGTG	1 cut(s)	16
Eam1104I	CTCTTC	2 cut(s)	165, 579
EarI	CTCTTC	2 cut(s)	165, 579
Eco31I	GGTCTC	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	238, 824
Eco57I	CTGAAG	2 cut(s)	66, 183
EcoO109I	RGGNCCY	2 cut(s)	238, 824
EcoRII	CCWGG	3 cut(s)	12, 70, 207
EcoT22I	ATGCAT	1 cut(s)	634
FaeI	CATG	4 cut(s)	96, 353, 593, 687
FaqI	GGGAC	2 cut(s)	224, 837
FatI	CATG	4 cut(s)	92, 349, 589, 683
FbaI	TGATCA	1 cut(s)	7
FokI	GGATG	2 cut(s)	619, 632
FspBI	CTAG	2 cut(s)	491, 528
HaeIII	GGCC	2 cut(s)	497, 704
HapII	CCGG	2 cut(s)	661, 821
Hin1II	CATG	4 cut(s)	96, 353, 593, 687
HincII	GTYRAC	2 cut(s)	28, 597
HindII	GTYRAC	2 cut(s)	28, 597
HinfI	GANTC	2 cut(s)	181, 835
HpaII	CCGG	2 cut(s)	661, 821
HphI	GGTGA	2 cut(s)	17, 623
Hpy166II	GTNNAC	3 cut(s)	28, 597, 810
Hpy188I	TCNGA	4 cut(s)	163, 180, 186, 385
Hpy188III	TCNNGA	3 cut(s)	491, 583, 845
Hpy8I	GTNNAC	3 cut(s)	28, 597, 810
Hpy99I	CGWCG	1 cut(s)	726
HpyAV	CCTTC	4 cut(s)	41, 301, 611, 720
HpyCH4III	ACNGT	3 cut(s)	157, 190, 611
HpyCH4IV	ACGT	1 cut(s)	721
HpyCH4V	TGCA	8 cut(s)	55, 252, 300, 632, 770, 781, 805, 830
HpyF10VI	GCNNNNNNNGC	6 cut(s)	258, 470, 533, 752, 755, 787
HpyF3I	CTNAG	3 cut(s)	108, 378, 762
HpySE526I	ACGT	1 cut(s)	721
Hsp92II	CATG	4 cut(s)	96, 353, 593, 687
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 74, 448
LguI	GCTCTTC	2 cut(s)	165, 579
LmnI	GCTCC	5 cut(s)	101, 533, 663, 823, 847
Lsp1109I	GCAGC	8 cut(s)	270, 482, 541, 548, 652, 755, 758, 765
LweI	GCATC	2 cut(s)	619, 641
MabI	ACCWGGT	1 cut(s)	12
MaeI	CTAG	2 cut(s)	491, 528
MaeII	ACGT	1 cut(s)	721
MaeIII	GTNAC	2 cut(s)	611, 832
MalI	GATC	3 cut(s)	9, 76, 450
MbiI	CCGCTC	1 cut(s)	549
MboI	GATC	3 cut(s)	7, 74, 448
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	1 cut(s)	74
MluCI	AATT	7 cut(s)	229, 266, 318, 327, 396, 561, 852
MlyI	GAGTC	1 cut(s)	829
MmeI	TCCRAC	1 cut(s)	395
Mph1103I	ATGCAT	1 cut(s)	634
MseI	TTAA	4 cut(s)	135, 225, 263, 566
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	2 cut(s)	661, 821
MspR9I	CCNGG	5 cut(s)	14, 72, 209, 662, 822
MunI	CAATTG	1 cut(s)	396
MvaI	CCWGG	3 cut(s)	14, 72, 209
MwoI	GCNNNNNNNGC	6 cut(s)	258, 470, 533, 752, 755, 787
NciI	CCSGG	2 cut(s)	662, 822
NdeII	GATC	3 cut(s)	7, 74, 448
NlaIII	CATG	4 cut(s)	96, 353, 593, 687
NlaIV	GGNNCC	3 cut(s)	240, 825, 849
NmuCI	GTSAC	2 cut(s)	611, 832
NsiI	ATGCAT	1 cut(s)	634
NspI	RCATGY	1 cut(s)	593
PaeI	GCATGC	1 cut(s)	593
PciSI	GCTCTTC	2 cut(s)	165, 579
PfeI	GAWTC	1 cut(s)	181
PfoI	TCCNGGA	1 cut(s)	820
PleI	GAGTC	1 cut(s)	829
PpsI	GAGTC	1 cut(s)	829
PpuMI	RGGWCCY	2 cut(s)	238, 824
Psp5II	RGGWCCY	2 cut(s)	238, 824
Psp6I	CCWGG	3 cut(s)	12, 70, 207
PspGI	CCWGG	3 cut(s)	12, 70, 207
PspN4I	GGNNCC	3 cut(s)	240, 825, 849
PspPI	GGNCC	3 cut(s)	238, 702, 824
PspPPI	RGGWCCY	2 cut(s)	238, 824
PstI	CTGCAG	2 cut(s)	783, 832
PstNI	CAGNNNCTG	1 cut(s)	476
PsuI	RGATCY	1 cut(s)	74
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
SapI	GCTCTTC	2 cut(s)	165, 579
SaqAI	TTAA	4 cut(s)	135, 225, 263, 566
Sau3AI	GATC	3 cut(s)	7, 74, 448
Sau96I	GGNCC	3 cut(s)	238, 702, 824
SchI	GAGTC	1 cut(s)	829
ScrFI	CCNGG	5 cut(s)	14, 72, 209, 662, 822
SexAI	ACCWGGT	1 cut(s)	12
SfaNI	GCATC	2 cut(s)	619, 641
SfcI	CTRYAG	3 cut(s)	81, 779, 828
SinI	GGWCC	2 cut(s)	238, 824
SmlI	CTYRAG	1 cut(s)	583
SmoI	CTYRAG	1 cut(s)	583
SphI	GCATGC	1 cut(s)	593
Sse9I	AATT	7 cut(s)	229, 266, 318, 327, 396, 561, 852
SsiI	CCGC	4 cut(s)	31, 473, 547, 755
SspMI	CTAG	2 cut(s)	491, 528
StyD4I	CCNGG	5 cut(s)	12, 70, 207, 660, 820
TaaI	ACNGT	3 cut(s)	157, 190, 611
TaiI	ACGT	1 cut(s)	724
TaqI	TCGA	2 cut(s)	454, 724
TasI	AATT	7 cut(s)	229, 266, 318, 327, 396, 561, 852
TauI	GCSGC	3 cut(s)	476, 549, 758
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	4 cut(s)	135, 225, 263, 566
Tru9I	TTAA	4 cut(s)	135, 225, 263, 566
TscAI	CASTG	3 cut(s)	259, 412, 837
TseFI	GTSAC	2 cut(s)	611, 832
TseI	GCWGC	8 cut(s)	258, 470, 536, 554, 665, 743, 746, 778
Tsp45I	GTSAC	2 cut(s)	611, 832
TspDTI	ATGAA	1 cut(s)	81
TspRI	CASTG	3 cut(s)	259, 412, 837
VpaK11BI	GGWCC	2 cut(s)	238, 824
XapI	RAATTY	3 cut(s)	229, 266, 327
XbaI	TCTAGA	1 cut(s)	490
XceI	RCATGY	1 cut(s)	593
XspI	CTAG	2 cut(s)	491, 528
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.