Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004621.1

Orthogroup ID

OG0004910

Physical Location & Seq

Genomic Coordinates Reverse (-)

80173 .. 83448

Gene Structure 3276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004621.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgagtgatcacctggtgttgtgtgttgaccgcttcacaaaacctgaaaattcgcaatcagtgcaagggactgagactccaggatcttcttctctagaggcctcatcctcccaatcggctgagatacccagctgtgcaattgatatcaagggaacgggggagaatgttgtatcagaagaagaggagccactgattcaaactgttgaatgtcgcatttgccaggaagaggatggcgttagcaatttggaggtcccctgtgcttgcagtggcagcttaaaatatgctcatagaaaatgtgtccagaggtggtgcaatgagaagggagatattatttgtgaaatctgtcatcagccttaccaacctggttatactgccccatcacctccccctcagtctgacgacactactatagacatcagtgagggctggacaatctctggtacccccttggatttacgtgatcctcgactattggcaatggcagcagcagaacgtcactttcttgaatctgaatatgatgagtatgctgatacaagtgctaatggagcagctttttgccgctctgctgctctaattttaatggctcttctactcctgaggcatgctttgactcttcccaatggtgatggtgatgatgatgatgcttctacatttttctctcttttcttgctacgagctgctggttttcttctcccctgctacattatggcctgggccatcagcatattacaacgtcgaaggcaaagacaggaagcagcagcacttgcggcaactgaggttgcatttatgctgcaggcagggcaacgtcgtggattgcagttcacaatagcttcaggacctgctgcaactccccatcaggagccaattcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005802 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031984 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070647 GO:0071704 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

290

Amino Acids

31.55

Weight (kDa)

4.61

Isoelectric Point (pI)

61.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47550 AT3G47550 AT3G47550 AT3G47550
fragaria_vesca	FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930 FvH4_5g14930
malus_domestica	MD06G1193400.v1.1 MD14G1200500.v1.1
prunus_persica	Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1 Prupe.5G193700_v2.0.a1
pyrus_communis	pycom06g17150 pycom14g16620
rosa_chinensis	RchiOBHm_Chr7g0181451
rosa_laevigata	RLG00000005193
rosa_multiflora	Rmu_sc0004621.1_g000021
rosa_roxburghii	Rroxscaffold_3G00271990
rosa_rugosa	Rorug06G0441300 Rorug06G0441400 Rorug06G0441400
rosa_samantha	Rh7BG042600 Rh7CG044400
rosa_wichuraiana	Rw7G003590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	847
Acc65I	GGTACC	1 cut(s)	440
AccB1I	GGYRCC	1 cut(s)	440
AccBSI	CCGCTC	1 cut(s)	561
AciI	CCGC	3 cut(s)	31, 559, 767
AclWI	GGATC	2 cut(s)	91, 455
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	816
AdeI	CACNNNGTG	1 cut(s)	16
AfaI	GTAC	1 cut(s)	442
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	4 cut(s)	197, 206, 506, 869
AjnI	CCWGG	5 cut(s)	12, 79, 219, 361, 710
AluBI	AGCT	5 cut(s)	132, 273, 551, 677, 830
AluI	AGCT	5 cut(s)	132, 273, 551, 677, 830
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	2 cut(s)	91, 455
AlwNI	CAGNNNCTG	1 cut(s)	839
AoxI	GGCC	3 cut(s)	99, 708, 714
ApoI	RAATTY	1 cut(s)	49
Asp718I	GGTACC	1 cut(s)	440
AspS9I	GGNCC	3 cut(s)	250, 714, 836
AsuHPI	GGTGA	3 cut(s)	372, 635, 641
AvaII	GGWCC	2 cut(s)	250, 836
AxyI	CCTNAGG	1 cut(s)	596
BanI	GGYRCC	1 cut(s)	440
BccI	CCATC	5 cut(s)	224, 385, 620, 725, 861
BciT130I	CCWGG	5 cut(s)	14, 81, 221, 363, 712
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	2 cut(s)	408, 791
BfuAI	ACCTGC	1 cut(s)	847
Bme1390I	CCNGG	5 cut(s)	14, 81, 221, 363, 712
Bme18I	GGWCC	2 cut(s)	250, 836
BmgT120I	GGNCC	3 cut(s)	250, 714, 836
BmiI	GGNNCC	4 cut(s)	186, 252, 442, 861
BmrFI	CCNGG	5 cut(s)	14, 81, 221, 363, 712
BmsI	GCATC	1 cut(s)	631
BpmI	CTGGAG	1 cut(s)	63
BsaAI	YACGTR	1 cut(s)	458
BsaJI	CCNNGG	2 cut(s)	447, 711
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse21I	CCTNAGG	1 cut(s)	596
Bse3DI	GCAATG	2 cut(s)	319, 483
BseBI	CCWGG	5 cut(s)	14, 81, 221, 363, 712
BseDI	CCNNGG	2 cut(s)	447, 711
BseGI	GGATG	2 cut(s)	104, 235
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMI	GCAATG	2 cut(s)	319, 483
BseMII	CTCAG	5 cut(s)	63, 111, 404, 587, 765
BseRI	GAGGAG	1 cut(s)	197
BseYI	CCCAGC	1 cut(s)	128
BshFI	GGCC	3 cut(s)	101, 710, 716
BshNI	GGYRCC	1 cut(s)	440
BslFI	GGGAC	2 cut(s)	82, 236
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	68
BsmFI	GGGAC	2 cut(s)	82, 236
BsnI	GGCC	3 cut(s)	101, 710, 716
Bsp143I	GATC	3 cut(s)	7, 83, 460
BspACI	CCGC	3 cut(s)	31, 559, 767
BspANI	GGCC	3 cut(s)	101, 710, 716
BspCNI	CTCAG	5 cut(s)	64, 112, 403, 588, 766
BspLI	GGNNCC	4 cut(s)	186, 252, 442, 861
BspMAI	CTGCAG	1 cut(s)	795
BspMI	ACCTGC	1 cut(s)	847
BspPI	GGATC	2 cut(s)	91, 455
BspQI	GCTCTTC	1 cut(s)	591
BspT107I	GGYRCC	1 cut(s)	440
BsrBI	CCGCTC	1 cut(s)	561
BsrDI	GCAATG	2 cut(s)	319, 483
BssECI	CCNNGG	2 cut(s)	447, 711
BssMI	GATC	3 cut(s)	7, 83, 460
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	5 cut(s)	14, 81, 221, 363, 712
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	4 cut(s)	174, 219, 591, 618
BstAPI	GCANNNNNTGC	2 cut(s)	61, 764
BstBAI	YACGTR	1 cut(s)	458
BstC8I	GCNNGC	3 cut(s)	262, 603, 795
BstDEI	CTNAG	5 cut(s)	72, 120, 390, 596, 774
BstF5I	GGATG	2 cut(s)	104, 235
BstKTI	GATC	3 cut(s)	10, 86, 463
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	3 cut(s)	7, 83, 460
BstMWI	GCNNNNNNNGC	7 cut(s)	61, 270, 482, 545, 764, 767, 799
BstNI	CCWGG	5 cut(s)	14, 81, 221, 363, 712
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	5 cut(s)	12, 79, 219, 361, 710
BstSFI	CTRYAG	2 cut(s)	408, 791
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
Bsu36I	CCTNAGG	1 cut(s)	596
BsuRI	GGCC	3 cut(s)	101, 710, 716
BtsCI	GGATG	2 cut(s)	104, 235
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	4 cut(s)	66, 188, 271, 424
BveI	ACCTGC	1 cut(s)	847
Cac8I	GCNNGC	3 cut(s)	262, 603, 795
CaiI	CAGNNNCTG	1 cut(s)	839
Cfr13I	GGNCC	3 cut(s)	250, 714, 836
CsiI	ACCWGGT	2 cut(s)	12, 361
Csp6I	GTAC	1 cut(s)	441
CviAII	CATG	1 cut(s)	602
CviQI	GTAC	1 cut(s)	441
DdeI	CTNAG	5 cut(s)	72, 120, 390, 596, 774
DpnI	GATC	3 cut(s)	9, 85, 462
DpnII	GATC	3 cut(s)	7, 83, 460
DraIII	CACNNNGTG	1 cut(s)	16
Eam1104I	CTCTTC	4 cut(s)	174, 219, 591, 618
EarI	CTCTTC	4 cut(s)	174, 219, 591, 618
Eco130I	CCWWGG	1 cut(s)	447
Eco147I	AGGCCT	1 cut(s)	101
Eco32I	GATATC	1 cut(s)	145
Eco47I	GGWCC	2 cut(s)	250, 836
Eco57I	CTGAAG	1 cut(s)	816
Eco81I	CCTNAGG	1 cut(s)	596
EcoO109I	RGGNCCY	2 cut(s)	250, 836
EcoRII	CCWGG	5 cut(s)	12, 79, 219, 361, 710
EcoRV	GATATC	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	447
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	1 cut(s)	605
FaqI	GGGAC	2 cut(s)	82, 236
FatI	CATG	1 cut(s)	601
FbaI	TGATCA	1 cut(s)	7
FokI	GGATG	2 cut(s)	91, 242
FspBI	CTAG	1 cut(s)	95
GsaI	CCCAGC	1 cut(s)	132
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	3 cut(s)	101, 710, 716
Hin1II	CATG	1 cut(s)	605
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	4 cut(s)	76, 193, 506, 610
HphI	GGTGA	3 cut(s)	372, 635, 641
Hpy166II	GTNNAC	2 cut(s)	28, 822
Hpy188I	TCNGA	3 cut(s)	175, 397, 511
Hpy188III	TCNNGA	6 cut(s)	95, 301, 503, 595, 834, 857
Hpy8I	GTNNAC	2 cut(s)	28, 822
Hpy99I	CGWCG	2 cut(s)	738, 810
HpyAV	CCTTC	2 cut(s)	313, 732
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	4 cut(s)	457, 493, 733, 805
HpyCH4V	TGCA	8 cut(s)	64, 137, 264, 312, 782, 793, 817, 845
HpyF10VI	GCNNNNNNNGC	7 cut(s)	61, 270, 482, 545, 764, 767, 799
HpyF3I	CTNAG	5 cut(s)	72, 120, 390, 596, 774
HpySE526I	ACGT	4 cut(s)	457, 493, 733, 805
Hsp92II	CATG	1 cut(s)	605
KpnI	GGTACC	1 cut(s)	444
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 83, 460
LguI	GCTCTTC	1 cut(s)	591
LmnI	GCTCC	3 cut(s)	184, 545, 859
LweI	GCATC	1 cut(s)	631
MabI	ACCWGGT	2 cut(s)	12, 361
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	4 cut(s)	457, 493, 733, 805
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	3 cut(s)	9, 85, 462
MbiI	CCGCTC	1 cut(s)	561
MboI	GATC	3 cut(s)	7, 83, 460
MboII	GAAGA	8 cut(s)	78, 81, 188, 191, 236, 578, 605, 680
MfeI	CAATTG	1 cut(s)	138
MflI	RGATCY	1 cut(s)	83
MluCI	AATT	5 cut(s)	49, 138, 241, 573, 864
MlyI	GAGTC	2 cut(s)	70, 604
MseI	TTAA	2 cut(s)	275, 578
MspA1I	CMGCKG	1 cut(s)	132
MspR9I	CCNGG	5 cut(s)	14, 81, 221, 363, 712
MunI	CAATTG	1 cut(s)	138
MvaI	CCWGG	5 cut(s)	14, 81, 221, 363, 712
MwoI	GCNNNNNNNGC	7 cut(s)	61, 270, 482, 545, 764, 767, 799
NdeII	GATC	3 cut(s)	7, 83, 460
NlaIII	CATG	1 cut(s)	605
NlaIV	GGNNCC	4 cut(s)	186, 252, 442, 861
NmuCI	GTSAC	1 cut(s)	494
NspI	RCATGY	1 cut(s)	605
PaeI	GCATGC	1 cut(s)	605
PceI	AGGCCT	1 cut(s)	101
PciSI	GCTCTTC	1 cut(s)	591
PcsI	WCGNNNNNNNCGW	1 cut(s)	463
PfeI	GAWTC	2 cut(s)	193, 506
PfoI	TCCNGGA	1 cut(s)	79
PleI	GAGTC	2 cut(s)	70, 604
PpsI	GAGTC	2 cut(s)	70, 604
Ppu21I	YACGTR	1 cut(s)	458
PpuMI	RGGWCCY	2 cut(s)	250, 836
Psp5II	RGGWCCY	2 cut(s)	250, 836
Psp6I	CCWGG	5 cut(s)	12, 79, 219, 361, 710
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	5 cut(s)	12, 79, 219, 361, 710
PspN4I	GGNNCC	4 cut(s)	186, 252, 442, 861
PspPI	GGNCC	3 cut(s)	250, 714, 836
PspPPI	RGGWCCY	2 cut(s)	250, 836
PstI	CTGCAG	1 cut(s)	795
PstNI	CAGNNNCTG	1 cut(s)	839
PsuI	RGATCY	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	132
RsaI	GTAC	1 cut(s)	442
RsaNI	GTAC	1 cut(s)	441
SapI	GCTCTTC	1 cut(s)	591
SaqAI	TTAA	2 cut(s)	275, 578
Sau3AI	GATC	3 cut(s)	7, 83, 460
Sau96I	GGNCC	3 cut(s)	250, 714, 836
SchI	GAGTC	2 cut(s)	70, 604
ScrFI	CCNGG	5 cut(s)	14, 81, 221, 363, 712
SexAI	ACCWGGT	2 cut(s)	12, 361
SfaNI	GCATC	1 cut(s)	631
SfcI	CTRYAG	2 cut(s)	408, 791
SinI	GGWCC	2 cut(s)	250, 836
SphI	GCATGC	1 cut(s)	605
Sse9I	AATT	5 cut(s)	49, 138, 241, 573, 864
SseBI	AGGCCT	1 cut(s)	101
SsiI	CCGC	3 cut(s)	31, 559, 767
SspMI	CTAG	1 cut(s)	95
StuI	AGGCCT	1 cut(s)	101
StyD4I	CCNGG	5 cut(s)	12, 79, 219, 361, 710
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	4 cut(s)	460, 496, 736, 808
TaqI	TCGA	2 cut(s)	466, 736
TasI	AATT	5 cut(s)	49, 138, 241, 573, 864
TauI	GCSGC	2 cut(s)	561, 770
TfiI	GAWTC	2 cut(s)	193, 506
Tru1I	TTAA	2 cut(s)	275, 578
Tru9I	TTAA	2 cut(s)	275, 578
TscAI	CASTG	4 cut(s)	66, 195, 271, 424
TseFI	GTSAC	1 cut(s)	494
Tsp45I	GTSAC	1 cut(s)	494
TspRI	CASTG	4 cut(s)	66, 195, 271, 424
VpaK11BI	GGWCC	2 cut(s)	250, 836
XapI	RAATTY	1 cut(s)	49
XbaI	TCTAGA	1 cut(s)	94
XceI	RCATGY	1 cut(s)	605
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.