Putative zinc finger motif, C2HC5-type
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G47610 |
| fragaria_vesca | FvH4_5g15050 FvH4_5g15050 |
| malus_domestica | MD06G1192400.v1.1 MD14G1199100.v1.1 |
| prunus_persica | Prupe.5G192200_v2.0.a1 |
| pyrus_communis | pycom06g17050 pycom14g16520 |
| rosa_chinensis | RchiOBHm_Chr7g0181151 |
| rosa_laevigata | RLG00000005209 |
| rosa_multiflora | Rmu_sc0020165.1_g000001 Rmu_sc0034479.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00272230 |
| rosa_rugosa | Rorug06G0438700 |
| rosa_samantha | Rh7AG040800 Rh7BG040200 Rh7CG042200 Rh7DG040600 |
| rosa_wichuraiana | Rw7G003370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 496, 629 |
| AciI | CCGC | 6 cut(s) | 11, 52, 381, 576, 705, 773 |
| AclWI | GGATC | 3 cut(s) | 212, 457, 1133 |
| AcoI | YGGCCR | 3 cut(s) | 702, 868, 1163 |
| AcsI | RAATTY | 2 cut(s) | 73, 697 |
| AcuI | CTGAAG | 1 cut(s) | 681 |
| AdeI | CACNNNGTG | 1 cut(s) | 508 |
| AfaI | GTAC | 3 cut(s) | 604, 712, 760 |
| AfeI | AGCGCT | 1 cut(s) | 36 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 65, 332 |
| AgeI | ACCGGT | 1 cut(s) | 65 |
| AgsI | TTSAA | 2 cut(s) | 73, 815 |
| AjnI | CCWGG | 1 cut(s) | 1006 |
| AluBI | AGCT | 7 cut(s) | 356, 377, 443, 491, 659, 787, 821 |
| AluI | AGCT | 7 cut(s) | 356, 377, 443, 491, 659, 787, 821 |
| Alw21I | GWGCWC | 1 cut(s) | 583 |
| Alw26I | GTCTC | 3 cut(s) | 56, 109, 935 |
| AlwI | GGATC | 3 cut(s) | 212, 457, 1133 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 641 |
| Aor51HI | AGCGCT | 1 cut(s) | 36 |
| AoxI | GGCC | 4 cut(s) | 560, 702, 868, 1163 |
| ApeKI | GCWGC | 3 cut(s) | 236, 440, 656 |
| ApoI | RAATTY | 2 cut(s) | 73, 697 |
| AsiGI | ACCGGT | 1 cut(s) | 65 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 340 |
| AspLEI | GCGC | 1 cut(s) | 37 |
| AspS9I | GGNCC | 4 cut(s) | 248, 560, 932, 1010 |
| AsuHPI | GGTGA | 2 cut(s) | 433, 1214 |
| AvaII | GGWCC | 3 cut(s) | 248, 932, 1010 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 621, 654 |
| BalI | TGGCCA | 1 cut(s) | 1165 |
| Bbv12I | GWGCWC | 1 cut(s) | 583 |
| BbvI | GCAGC | 3 cut(s) | 248, 452, 668 |
| BccI | CCATC | 4 cut(s) | 229, 1172, 1174, 1190 |
| BceAI | ACGGC | 2 cut(s) | 24, 855 |
| BciT130I | CCWGG | 1 cut(s) | 1008 |
| BciVI | GTATCC | 1 cut(s) | 203 |
| BcoDI | GTCTC | 3 cut(s) | 56, 109, 935 |
| BfaI | CTAG | 7 cut(s) | 26, 225, 297, 617, 788, 908, 1082 |
| BfmI | CTRYAG | 1 cut(s) | 197 |
| BfoI | RGCGCY | 1 cut(s) | 38 |
| BfuI | GTATCC | 1 cut(s) | 203 |
| BisI | GCNGC | 5 cut(s) | 52, 237, 441, 657, 705 |
| BlpI | GCTNAGC | 1 cut(s) | 123 |
| BlsI | GCNGC | 5 cut(s) | 53, 238, 442, 658, 706 |
| BmcAI | AGTACT | 1 cut(s) | 760 |
| Bme1390I | CCNGG | 1 cut(s) | 1008 |
| Bme18I | GGWCC | 3 cut(s) | 248, 932, 1010 |
| BmgT120I | GGNCC | 4 cut(s) | 248, 560, 932, 1010 |
| BmiI | GGNNCC | 2 cut(s) | 304, 933 |
| BmrFI | CCNGG | 1 cut(s) | 1008 |
| BmrI | ACTGGG | 1 cut(s) | 372 |
| BmsI | GCATC | 3 cut(s) | 124, 189, 634 |
| BmuI | ACTGGG | 1 cut(s) | 372 |
| BpmI | CTGGAG | 1 cut(s) | 618 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 123 |
| BsaAI | YACGTR | 1 cut(s) | 710 |
| BsaI | GGTCTC | 1 cut(s) | 56 |
| BsaJI | CCNNGG | 2 cut(s) | 138, 1006 |
| BsaWI | WCCGGW | 2 cut(s) | 65, 95 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 570, 600 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 65, 332 |
| Bse118I | RCCGGY | 1 cut(s) | 65 |
| Bse1I | ACTGG | 3 cut(s) | 240, 367, 635 |
| Bse3DI | GCAATG | 1 cut(s) | 183 |
| BseBI | CCWGG | 1 cut(s) | 1008 |
| BseDI | CCNNGG | 2 cut(s) | 138, 1006 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 65, 332 |
| BseMI | GCAATG | 1 cut(s) | 183 |
| BseMII | CTCAG | 4 cut(s) | 137, 741, 915, 930 |
| BseNI | ACTGG | 3 cut(s) | 240, 367, 635 |
| BseRI | GAGGAG | 1 cut(s) | 821 |
| BseX3I | CGGCCG | 2 cut(s) | 702, 868 |
| BseXI | GCAGC | 3 cut(s) | 248, 452, 668 |
| BseYI | CCCAGC | 2 cut(s) | 384, 611 |
| Bsh1285I | CGRYCG | 3 cut(s) | 82, 705, 871 |
| BshFI | GGCC | 4 cut(s) | 562, 704, 870, 1165 |
| BshTI | ACCGGT | 1 cut(s) | 65 |
| BsiEI | CGRYCG | 3 cut(s) | 82, 705, 871 |
| BsiHKAI | GWGCWC | 1 cut(s) | 583 |
| BsiSI | CCGG | 2 cut(s) | 66, 96 |
| BslFI | GGGAC | 2 cut(s) | 30, 945 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 65, 332 |
| BsmAI | GTCTC | 3 cut(s) | 56, 109, 935 |
| BsmFI | GGGAC | 2 cut(s) | 30, 945 |
| BsnI | GGCC | 4 cut(s) | 562, 704, 870, 1165 |
| Bso31I | GGTCTC | 1 cut(s) | 56 |
| Bsp1286I | GDGCHC | 1 cut(s) | 583 |
| Bsp143I | GATC | 6 cut(s) | 79, 115, 217, 449, 1086, 1138 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 123 |
| BspACI | CCGC | 6 cut(s) | 11, 52, 381, 576, 705, 773 |
| BspANI | GGCC | 4 cut(s) | 562, 704, 870, 1165 |
| BspCNI | CTCAG | 4 cut(s) | 136, 742, 914, 931 |
| BspLI | GGNNCC | 2 cut(s) | 304, 933 |
| BspPI | GGATC | 3 cut(s) | 212, 457, 1133 |
| BspTNI | GGTCTC | 1 cut(s) | 56 |
| BsrDI | GCAATG | 1 cut(s) | 183 |
| BsrFI | RCCGGY | 1 cut(s) | 65 |
| BsrI | ACTGG | 3 cut(s) | 240, 367, 635 |
| BssAI | RCCGGY | 1 cut(s) | 65 |
| BssECI | CCNNGG | 2 cut(s) | 138, 1006 |
| BssMI | GATC | 6 cut(s) | 79, 115, 217, 449, 1086, 1138 |
| BssNAI | GTATAC | 1 cut(s) | 630 |
| BssT1I | CCWWGG | 1 cut(s) | 138 |
| Bst1107I | GTATAC | 1 cut(s) | 630 |
| Bst2UI | CCWGG | 1 cut(s) | 1008 |
| Bst4CI | ACNGT | 6 cut(s) | 21, 315, 477, 718, 1073, 1154 |
| Bst6I | CTCTTC | 1 cut(s) | 199 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 573 |
| BstBAI | YACGTR | 1 cut(s) | 710 |
| BstC8I | GCNNGC | 2 cut(s) | 354, 484 |
| BstDEI | CTNAG | 8 cut(s) | 123, 399, 505, 750, 901, 939, 1000, 1213 |
| BstH2I | RGCGCY | 1 cut(s) | 38 |
| BstHHI | GCGC | 1 cut(s) | 37 |
| BstKTI | GATC | 6 cut(s) | 82, 118, 220, 452, 1089, 1141 |
| BstMAI | GTCTC | 3 cut(s) | 56, 109, 935 |
| BstMBI | GATC | 6 cut(s) | 79, 115, 217, 449, 1086, 1138 |
| BstMCI | CGRYCG | 3 cut(s) | 82, 705, 871 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 440, 488, 573, 653, 662 |
| BstNI | CCWGG | 1 cut(s) | 1008 |
| BstNSI | RCATGY | 1 cut(s) | 486 |
| BstSCI | CCNGG | 1 cut(s) | 1006 |
| BstSFI | CTRYAG | 1 cut(s) | 197 |
| BstV1I | GCAGC | 3 cut(s) | 248, 452, 668 |
| BstX2I | RGATCY | 1 cut(s) | 217 |
| BstYI | RGATCY | 1 cut(s) | 217 |
| BstZ17I | GTATAC | 1 cut(s) | 630 |
| BstZI | CGGCCG | 2 cut(s) | 702, 868 |
| BsuI | GTATCC | 1 cut(s) | 203 |
| BsuRI | GGCC | 4 cut(s) | 562, 704, 870, 1165 |
| BtsIMutI | CAGTG | 1 cut(s) | 26 |
| Cac8I | GCNNGC | 2 cut(s) | 354, 484 |
| CaiI | CAGNNNCTG | 1 cut(s) | 641 |
| CfoI | GCGC | 1 cut(s) | 37 |
| Cfr10I | RCCGGY | 1 cut(s) | 65 |
| Cfr13I | GGNCC | 4 cut(s) | 248, 560, 932, 1010 |
| Csp6I | GTAC | 3 cut(s) | 603, 711, 759 |
| CspAI | ACCGGT | 1 cut(s) | 65 |
| CviAII | CATG | 4 cut(s) | 230, 483, 1106, 1187 |
| CviQI | GTAC | 3 cut(s) | 603, 711, 759 |
| DdeI | CTNAG | 8 cut(s) | 123, 399, 505, 750, 901, 939, 1000, 1213 |
| DpnI | GATC | 6 cut(s) | 81, 117, 219, 451, 1088, 1140 |
| DpnII | GATC | 6 cut(s) | 79, 115, 217, 449, 1086, 1138 |
| DraI | TTTAAA | 1 cut(s) | 319 |
| DraIII | CACNNNGTG | 1 cut(s) | 508 |
| EaeI | YGGCCR | 3 cut(s) | 702, 868, 1163 |
| EagI | CGGCCG | 2 cut(s) | 702, 868 |
| Eam1104I | CTCTTC | 1 cut(s) | 199 |
| EarI | CTCTTC | 1 cut(s) | 199 |
| EclXI | CGGCCG | 2 cut(s) | 702, 868 |
| Eco130I | CCWWGG | 1 cut(s) | 138 |
| Eco31I | GGTCTC | 1 cut(s) | 56 |
| Eco32I | GATATC | 1 cut(s) | 898 |
| Eco47I | GGWCC | 3 cut(s) | 248, 932, 1010 |
| Eco47III | AGCGCT | 1 cut(s) | 36 |
| Eco52I | CGGCCG | 2 cut(s) | 702, 868 |
| Eco57I | CTGAAG | 1 cut(s) | 681 |
| EcoO109I | RGGNCCY | 1 cut(s) | 560 |
| EcoRII | CCWGG | 1 cut(s) | 1006 |
| EcoRV | GATATC | 1 cut(s) | 898 |
| EcoT14I | CCWWGG | 1 cut(s) | 138 |
| ErhI | CCWWGG | 1 cut(s) | 138 |
| FaeI | CATG | 4 cut(s) | 233, 486, 1109, 1190 |
| FaqI | GGGAC | 2 cut(s) | 30, 945 |
| FatI | CATG | 4 cut(s) | 229, 482, 1105, 1186 |
| FauI | CCCGC | 1 cut(s) | 388 |
| FauNDI | CATATG | 2 cut(s) | 607, 667 |
| FblI | GTMKAC | 2 cut(s) | 496, 629 |
| Fnu4HI | GCNGC | 5 cut(s) | 52, 237, 441, 657, 705 |
| Fsp4HI | GCNGC | 5 cut(s) | 52, 237, 441, 657, 705 |
| FspBI | CTAG | 7 cut(s) | 26, 225, 297, 617, 788, 908, 1082 |
| GlaI | GCGC | 1 cut(s) | 36 |
| GluI | GCNGC | 5 cut(s) | 52, 237, 441, 657, 705 |
| GsaI | CCCAGC | 2 cut(s) | 388, 615 |
| GsuI | CTGGAG | 1 cut(s) | 618 |
| HaeII | RGCGCY | 1 cut(s) | 38 |
| HaeIII | GGCC | 4 cut(s) | 562, 704, 870, 1165 |
| HapII | CCGG | 2 cut(s) | 66, 96 |
| HhaI | GCGC | 1 cut(s) | 37 |
| Hin1II | CATG | 4 cut(s) | 233, 486, 1109, 1190 |
| Hin6I | GCGC | 1 cut(s) | 35 |
| HinP1I | GCGC | 1 cut(s) | 35 |
| HincII | GTYRAC | 1 cut(s) | 43 |
| HindII | GTYRAC | 1 cut(s) | 43 |
| HinfI | GANTC | 4 cut(s) | 746, 911, 925, 984 |
| HpaII | CCGG | 2 cut(s) | 66, 96 |
| HphI | GGTGA | 2 cut(s) | 433, 1214 |
| Hpy166II | GTNNAC | 5 cut(s) | 43, 497, 630, 955, 1118 |
| Hpy188I | TCNGA | 4 cut(s) | 643, 751, 904, 1150 |
| Hpy188III | TCNNGA | 5 cut(s) | 83, 149, 251, 1082, 1170 |
| Hpy8I | GTNNAC | 5 cut(s) | 43, 497, 630, 955, 1118 |
| HpyAV | CCTTC | 5 cut(s) | 164, 545, 551, 590, 1089 |
| HpyCH4III | ACNGT | 6 cut(s) | 21, 315, 477, 718, 1073, 1154 |
| HpyCH4IV | ACGT | 2 cut(s) | 709, 951 |
| HpyCH4V | TGCA | 6 cut(s) | 188, 259, 482, 567, 980, 1102 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 440, 488, 573, 653, 662 |
| HpyF3I | CTNAG | 8 cut(s) | 123, 399, 505, 750, 901, 939, 1000, 1213 |
| HpySE526I | ACGT | 2 cut(s) | 709, 951 |
| Hsp92II | CATG | 4 cut(s) | 233, 486, 1109, 1190 |
| HspAI | GCGC | 1 cut(s) | 35 |
| Kzo9I | GATC | 6 cut(s) | 79, 115, 217, 449, 1086, 1138 |
| LmnI | GCTCC | 2 cut(s) | 382, 578 |
| Lsp1109I | GCAGC | 3 cut(s) | 248, 452, 668 |
| LweI | GCATC | 3 cut(s) | 124, 189, 634 |
| MaeI | CTAG | 7 cut(s) | 26, 225, 297, 617, 788, 908, 1082 |
| MaeII | ACGT | 2 cut(s) | 709, 951 |
| MalI | GATC | 6 cut(s) | 81, 117, 219, 451, 1088, 1140 |
| MboI | GATC | 6 cut(s) | 79, 115, 217, 449, 1086, 1138 |
| MboII | GAAGA | 9 cut(s) | 216, 333, 415, 808, 827, 902, 988, 1033, 1205 |
| MflI | RGATCY | 1 cut(s) | 217 |
| MhlI | GDGCHC | 1 cut(s) | 583 |
| MlsI | TGGCCA | 1 cut(s) | 1165 |
| MluCI | AATT | 3 cut(s) | 73, 368, 697 |
| MluNI | TGGCCA | 1 cut(s) | 1165 |
| MlyI | GAGTC | 1 cut(s) | 978 |
| MnlI | CCTC | 8 cut(s) | 22, 56, 200, 325, 613, 769, 786, 799 |
| Mox20I | TGGCCA | 1 cut(s) | 1165 |
| MroXI | GAANNNNTTC | 1 cut(s) | 340 |
| MscI | TGGCCA | 1 cut(s) | 1165 |
| MseI | TTAA | 6 cut(s) | 270, 318, 371, 393, 863, 884 |
| Msp20I | TGGCCA | 1 cut(s) | 1165 |
| MspA1I | CMGCKG | 1 cut(s) | 659 |
| MspI | CCGG | 2 cut(s) | 66, 96 |
| MspR9I | CCNGG | 1 cut(s) | 1008 |
| MvaI | CCWGG | 1 cut(s) | 1008 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 440, 488, 573, 653, 662 |
| NdeI | CATATG | 2 cut(s) | 607, 667 |
| NdeII | GATC | 6 cut(s) | 79, 115, 217, 449, 1086, 1138 |
| NlaIII | CATG | 4 cut(s) | 233, 486, 1109, 1190 |
| NlaIV | GGNNCC | 2 cut(s) | 304, 933 |
| NspI | RCATGY | 1 cut(s) | 486 |
| PaeI | GCATGC | 1 cut(s) | 486 |
| PdmI | GAANNNNTTC | 1 cut(s) | 340 |
| PfeI | GAWTC | 3 cut(s) | 746, 911, 925 |
| PinAI | ACCGGT | 1 cut(s) | 65 |
| PkrI | GCNGC | 5 cut(s) | 53, 238, 442, 658, 706 |
| Ple19I | CGATCG | 1 cut(s) | 82 |
| PleI | GAGTC | 1 cut(s) | 978 |
| PpsI | GAGTC | 1 cut(s) | 978 |
| Ppu21I | YACGTR | 1 cut(s) | 710 |
| Psp6I | CCWGG | 1 cut(s) | 1006 |
| PspFI | CCCAGC | 2 cut(s) | 384, 611 |
| PspGI | CCWGG | 1 cut(s) | 1006 |
| PspN4I | GGNNCC | 2 cut(s) | 304, 933 |
| PspPI | GGNCC | 4 cut(s) | 248, 560, 932, 1010 |
| PstNI | CAGNNNCTG | 1 cut(s) | 641 |
| PsuI | RGATCY | 1 cut(s) | 217 |
| PvuI | CGATCG | 1 cut(s) | 82 |
| PvuII | CAGCTG | 1 cut(s) | 659 |
| RsaI | GTAC | 3 cut(s) | 604, 712, 760 |
| RsaNI | GTAC | 3 cut(s) | 603, 711, 759 |
| SaqAI | TTAA | 6 cut(s) | 270, 318, 371, 393, 863, 884 |
| SatI | GCNGC | 5 cut(s) | 52, 237, 441, 657, 705 |
| Sau3AI | GATC | 6 cut(s) | 79, 115, 217, 449, 1086, 1138 |
| Sau96I | GGNCC | 4 cut(s) | 248, 560, 932, 1010 |
| ScaI | AGTACT | 1 cut(s) | 760 |
| SchI | GAGTC | 1 cut(s) | 978 |
| ScrFI | CCNGG | 1 cut(s) | 1008 |
| SduI | GDGCHC | 1 cut(s) | 583 |
| SfaNI | GCATC | 3 cut(s) | 124, 189, 634 |
| SfcI | CTRYAG | 1 cut(s) | 197 |
| SinI | GGWCC | 3 cut(s) | 248, 932, 1010 |
| SphI | GCATGC | 1 cut(s) | 486 |
| Sse9I | AATT | 3 cut(s) | 73, 368, 697 |
| SsiI | CCGC | 6 cut(s) | 11, 52, 381, 576, 705, 773 |
| SspI | AATATT | 1 cut(s) | 157 |
| SspMI | CTAG | 7 cut(s) | 26, 225, 297, 617, 788, 908, 1082 |
| StyD4I | CCNGG | 1 cut(s) | 1006 |
| StyI | CCWWGG | 1 cut(s) | 138 |
| TaaI | ACNGT | 6 cut(s) | 21, 315, 477, 718, 1073, 1154 |
| TaiI | ACGT | 2 cut(s) | 712, 954 |
| TaqI | TCGA | 3 cut(s) | 78, 132, 150 |
| TasI | AATT | 3 cut(s) | 73, 368, 697 |
| TatI | WGTACW | 2 cut(s) | 602, 758 |
| TauI | GCSGC | 2 cut(s) | 54, 707 |
| TfiI | GAWTC | 3 cut(s) | 746, 911, 925 |
| Tru1I | TTAA | 6 cut(s) | 270, 318, 371, 393, 863, 884 |
| Tru9I | TTAA | 6 cut(s) | 270, 318, 371, 393, 863, 884 |
| TscAI | CASTG | 1 cut(s) | 26 |
| TseI | GCWGC | 3 cut(s) | 236, 440, 656 |
| TspDTI | ATGAA | 3 cut(s) | 759, 903, 1175 |
| TspRI | CASTG | 1 cut(s) | 26 |
| VpaK11BI | GGWCC | 3 cut(s) | 248, 932, 1010 |
| XapI | RAATTY | 2 cut(s) | 73, 697 |
| XbaI | TCTAGA | 1 cut(s) | 1081 |
| XceI | RCATGY | 1 cut(s) | 486 |
| XmiI | GTMKAC | 2 cut(s) | 496, 629 |
| XmnI | GAANNNNTTC | 1 cut(s) | 340 |
| XspI | CTAG | 7 cut(s) | 26, 225, 297, 617, 788, 908, 1082 |
| ZrmI | AGTACT | 1 cut(s) | 760 |