AT3G47610

Putative zinc finger motif, C2HC5-type

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
17549111 .. 17551520
2410 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47610.1

Sequence Viewer

Length: 1227 bp
ATGGGAACGGCGGTGGGACAGTGGCTAGAGGAAGCGCTTGTTGACCTCTGCCGCAAACCAGAGACCGGTTTGAATTTCGATCGTGATGTCATCTCCGGTTTAGTCTCCTATTGCGATCTTGCTCAGCCTGTCGATGCCAAGGAATATCTCGACAATATTATTGGAAAAGAAGGCAAAAGCATCATTGCAGAATATCTACAGCGAAGAGGATACAAAGATCCATCTAGCCATGTAGCAGCCAGTTCAGGTCCAGAACTGCAAATGTATGTTAAGCCAAAAGTGGATAATGGTGCTTCTAGTGGAACCAAGAAACCGTTTAAAACACCAAAAGAGGGAACATCTTCTAATCAGCAAGCTGGAACTGGGAAATTAACAGCTCCCGCCCAGCAAGTTAATCCTAAGAAGAAAAAAGGTGGAAAGGTGATTTCTCTTGCCGAAGCAGCTAAAGGATCAATAGTGTTTCAGCAAGGAAAACCGTGTGCATGCCAAGCTCGTAGACACCACTTAGTGAGCAACTGCTTGTCGTGTGGGAAAATAGTGTGCGAACAAGAAGGAGAAGGGCCTTGCAGTTTTTGCGGAGCACTTGTGCTGAAAGAAGGAAGTACATATGCTGGGCTAGAGGTAGGGTATACTCCAGTATCTGATGCTGATGTGGCAGCTGAAGCATATGCGAAAAGGCTTGTAGAGTATGATAGAAATTCGGCCGCACGTACAACGGTTATTGATGACCAAAGCGATTACTATGAATCTGAGAGCAGTACTTGGCTCTCTGCGGAGGAAAAAGAGCTAGTGAGGAAGAAGCGAGAGGAGATTGAAGAAGCTGAACGAGTAAAAAAGAGCAAAGTGGTTATGACATTTGATTTAATCGGCCGTAAGGTTCTGTTAAATGAAGATGATATCTCAGAACTAGAATCAGGGAACAGGATTCTGGGACCACCTGAGACTAAAAACGTGAACAGAATAAAACCGAACCCGACTGCAAGACTCGTTCCAATCTTCTTAGACCCAGGACCAACCGAGAAGAAGCCAAACAGCACCACCACCAAGAAAGACAACAAGAAAAACCGAAACGGTTTGTGTCTAGAGATCACAGGAAGGGTGCAACATGACAGAAGTGAACTCAAATACTTACAAGCCGATCCAAAATCGGACGGTAAATCTTGGCCATCAGGAAACGATGGACTTCATGTAGAAGATGGTGGTGAATGTTCCTTAGATTACGACTAA

Protein Analysis

408

Amino Acids

44.56

Weight (kDa)

6.32

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2HC5 PF06221 158 - 199 1e-12 Putative zinc finger motif, C2HC5-type
TRIP4_3rd PF23134 243 - 294 2.2e-18 TRIP4, third domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012117)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 496, 629
AciI CCGC 6 cut(s) 11, 52, 381, 576, 705, 773
AclWI GGATC 3 cut(s) 212, 457, 1133
AcoI YGGCCR 3 cut(s) 702, 868, 1163
AcsI RAATTY 2 cut(s) 73, 697
AcuI CTGAAG 1 cut(s) 681
AdeI CACNNNGTG 1 cut(s) 508
AfaI GTAC 3 cut(s) 604, 712, 760
AfeI AGCGCT 1 cut(s) 36
AfiI CCNNNNNNNGG 2 cut(s) 65, 332
AgeI ACCGGT 1 cut(s) 65
AgsI TTSAA 2 cut(s) 73, 815
AjnI CCWGG 1 cut(s) 1006
AluBI AGCT 7 cut(s) 356, 377, 443, 491, 659, 787, 821
AluI AGCT 7 cut(s) 356, 377, 443, 491, 659, 787, 821
Alw21I GWGCWC 1 cut(s) 583
Alw26I GTCTC 3 cut(s) 56, 109, 935
AlwI GGATC 3 cut(s) 212, 457, 1133
AlwNI CAGNNNCTG 1 cut(s) 641
Aor51HI AGCGCT 1 cut(s) 36
AoxI GGCC 4 cut(s) 560, 702, 868, 1163
ApeKI GCWGC 3 cut(s) 236, 440, 656
ApoI RAATTY 2 cut(s) 73, 697
AsiGI ACCGGT 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 340
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 4 cut(s) 248, 560, 932, 1010
AsuHPI GGTGA 2 cut(s) 433, 1214
AvaII GGWCC 3 cut(s) 248, 932, 1010
BaeI ACNNNNGTAYC 2 cut(s) 621, 654
BalI TGGCCA 1 cut(s) 1165
Bbv12I GWGCWC 1 cut(s) 583
BbvI GCAGC 3 cut(s) 248, 452, 668
BccI CCATC 4 cut(s) 229, 1172, 1174, 1190
BceAI ACGGC 2 cut(s) 24, 855
BciT130I CCWGG 1 cut(s) 1008
BciVI GTATCC 1 cut(s) 203
BcoDI GTCTC 3 cut(s) 56, 109, 935
BfaI CTAG 7 cut(s) 26, 225, 297, 617, 788, 908, 1082
BfmI CTRYAG 1 cut(s) 197
BfoI RGCGCY 1 cut(s) 38
BfuI GTATCC 1 cut(s) 203
BisI GCNGC 5 cut(s) 52, 237, 441, 657, 705
BlpI GCTNAGC 1 cut(s) 123
BlsI GCNGC 5 cut(s) 53, 238, 442, 658, 706
BmcAI AGTACT 1 cut(s) 760
Bme1390I CCNGG 1 cut(s) 1008
Bme18I GGWCC 3 cut(s) 248, 932, 1010
BmgT120I GGNCC 4 cut(s) 248, 560, 932, 1010
BmiI GGNNCC 2 cut(s) 304, 933
BmrFI CCNGG 1 cut(s) 1008
BmrI ACTGGG 1 cut(s) 372
BmsI GCATC 3 cut(s) 124, 189, 634
BmuI ACTGGG 1 cut(s) 372
BpmI CTGGAG 1 cut(s) 618
Bpu1102I GCTNAGC 1 cut(s) 123
BsaAI YACGTR 1 cut(s) 710
BsaI GGTCTC 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 138, 1006
BsaWI WCCGGW 2 cut(s) 65, 95
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 332
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 3 cut(s) 240, 367, 635
Bse3DI GCAATG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 1008
BseDI CCNNGG 2 cut(s) 138, 1006
BseLI CCNNNNNNNGG 2 cut(s) 65, 332
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 4 cut(s) 137, 741, 915, 930
BseNI ACTGG 3 cut(s) 240, 367, 635
BseRI GAGGAG 1 cut(s) 821
BseX3I CGGCCG 2 cut(s) 702, 868
BseXI GCAGC 3 cut(s) 248, 452, 668
BseYI CCCAGC 2 cut(s) 384, 611
Bsh1285I CGRYCG 3 cut(s) 82, 705, 871
BshFI GGCC 4 cut(s) 562, 704, 870, 1165
BshTI ACCGGT 1 cut(s) 65
BsiEI CGRYCG 3 cut(s) 82, 705, 871
BsiHKAI GWGCWC 1 cut(s) 583
BsiSI CCGG 2 cut(s) 66, 96
BslFI GGGAC 2 cut(s) 30, 945
BslI CCNNNNNNNGG 2 cut(s) 65, 332
BsmAI GTCTC 3 cut(s) 56, 109, 935
BsmFI GGGAC 2 cut(s) 30, 945
BsnI GGCC 4 cut(s) 562, 704, 870, 1165
Bso31I GGTCTC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 583
Bsp143I GATC 6 cut(s) 79, 115, 217, 449, 1086, 1138
Bsp1720I GCTNAGC 1 cut(s) 123
BspACI CCGC 6 cut(s) 11, 52, 381, 576, 705, 773
BspANI GGCC 4 cut(s) 562, 704, 870, 1165
BspCNI CTCAG 4 cut(s) 136, 742, 914, 931
BspLI GGNNCC 2 cut(s) 304, 933
BspPI GGATC 3 cut(s) 212, 457, 1133
BspTNI GGTCTC 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 3 cut(s) 240, 367, 635
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 2 cut(s) 138, 1006
BssMI GATC 6 cut(s) 79, 115, 217, 449, 1086, 1138
BssNAI GTATAC 1 cut(s) 630
BssT1I CCWWGG 1 cut(s) 138
Bst1107I GTATAC 1 cut(s) 630
Bst2UI CCWGG 1 cut(s) 1008
Bst4CI ACNGT 6 cut(s) 21, 315, 477, 718, 1073, 1154
Bst6I CTCTTC 1 cut(s) 199
BstAPI GCANNNNNTGC 1 cut(s) 573
BstBAI YACGTR 1 cut(s) 710
BstC8I GCNNGC 2 cut(s) 354, 484
BstDEI CTNAG 8 cut(s) 123, 399, 505, 750, 901, 939, 1000, 1213
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 6 cut(s) 82, 118, 220, 452, 1089, 1141
BstMAI GTCTC 3 cut(s) 56, 109, 935
BstMBI GATC 6 cut(s) 79, 115, 217, 449, 1086, 1138
BstMCI CGRYCG 3 cut(s) 82, 705, 871
BstMWI GCNNNNNNNGC 5 cut(s) 440, 488, 573, 653, 662
BstNI CCWGG 1 cut(s) 1008
BstNSI RCATGY 1 cut(s) 486
BstSCI CCNGG 1 cut(s) 1006
BstSFI CTRYAG 1 cut(s) 197
BstV1I GCAGC 3 cut(s) 248, 452, 668
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BstZ17I GTATAC 1 cut(s) 630
BstZI CGGCCG 2 cut(s) 702, 868
BsuI GTATCC 1 cut(s) 203
BsuRI GGCC 4 cut(s) 562, 704, 870, 1165
BtsIMutI CAGTG 1 cut(s) 26
Cac8I GCNNGC 2 cut(s) 354, 484
CaiI CAGNNNCTG 1 cut(s) 641
CfoI GCGC 1 cut(s) 37
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 4 cut(s) 248, 560, 932, 1010
Csp6I GTAC 3 cut(s) 603, 711, 759
CspAI ACCGGT 1 cut(s) 65
CviAII CATG 4 cut(s) 230, 483, 1106, 1187
CviQI GTAC 3 cut(s) 603, 711, 759
DdeI CTNAG 8 cut(s) 123, 399, 505, 750, 901, 939, 1000, 1213
DpnI GATC 6 cut(s) 81, 117, 219, 451, 1088, 1140
DpnII GATC 6 cut(s) 79, 115, 217, 449, 1086, 1138
DraI TTTAAA 1 cut(s) 319
DraIII CACNNNGTG 1 cut(s) 508
EaeI YGGCCR 3 cut(s) 702, 868, 1163
EagI CGGCCG 2 cut(s) 702, 868
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
EclXI CGGCCG 2 cut(s) 702, 868
Eco130I CCWWGG 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 56
Eco32I GATATC 1 cut(s) 898
Eco47I GGWCC 3 cut(s) 248, 932, 1010
Eco47III AGCGCT 1 cut(s) 36
Eco52I CGGCCG 2 cut(s) 702, 868
Eco57I CTGAAG 1 cut(s) 681
EcoO109I RGGNCCY 1 cut(s) 560
EcoRII CCWGG 1 cut(s) 1006
EcoRV GATATC 1 cut(s) 898
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 4 cut(s) 233, 486, 1109, 1190
FaqI GGGAC 2 cut(s) 30, 945
FatI CATG 4 cut(s) 229, 482, 1105, 1186
FauI CCCGC 1 cut(s) 388
FauNDI CATATG 2 cut(s) 607, 667
FblI GTMKAC 2 cut(s) 496, 629
Fnu4HI GCNGC 5 cut(s) 52, 237, 441, 657, 705
Fsp4HI GCNGC 5 cut(s) 52, 237, 441, 657, 705
FspBI CTAG 7 cut(s) 26, 225, 297, 617, 788, 908, 1082
GlaI GCGC 1 cut(s) 36
GluI GCNGC 5 cut(s) 52, 237, 441, 657, 705
GsaI CCCAGC 2 cut(s) 388, 615
GsuI CTGGAG 1 cut(s) 618
HaeII RGCGCY 1 cut(s) 38
HaeIII GGCC 4 cut(s) 562, 704, 870, 1165
HapII CCGG 2 cut(s) 66, 96
HhaI GCGC 1 cut(s) 37
Hin1II CATG 4 cut(s) 233, 486, 1109, 1190
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 4 cut(s) 746, 911, 925, 984
HpaII CCGG 2 cut(s) 66, 96
HphI GGTGA 2 cut(s) 433, 1214
Hpy166II GTNNAC 5 cut(s) 43, 497, 630, 955, 1118
Hpy188I TCNGA 4 cut(s) 643, 751, 904, 1150
Hpy188III TCNNGA 5 cut(s) 83, 149, 251, 1082, 1170
Hpy8I GTNNAC 5 cut(s) 43, 497, 630, 955, 1118
HpyAV CCTTC 5 cut(s) 164, 545, 551, 590, 1089
HpyCH4III ACNGT 6 cut(s) 21, 315, 477, 718, 1073, 1154
HpyCH4IV ACGT 2 cut(s) 709, 951
HpyCH4V TGCA 6 cut(s) 188, 259, 482, 567, 980, 1102
HpyF10VI GCNNNNNNNGC 5 cut(s) 440, 488, 573, 653, 662
HpyF3I CTNAG 8 cut(s) 123, 399, 505, 750, 901, 939, 1000, 1213
HpySE526I ACGT 2 cut(s) 709, 951
Hsp92II CATG 4 cut(s) 233, 486, 1109, 1190
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 6 cut(s) 79, 115, 217, 449, 1086, 1138
LmnI GCTCC 2 cut(s) 382, 578
Lsp1109I GCAGC 3 cut(s) 248, 452, 668
LweI GCATC 3 cut(s) 124, 189, 634
MaeI CTAG 7 cut(s) 26, 225, 297, 617, 788, 908, 1082
MaeII ACGT 2 cut(s) 709, 951
MalI GATC 6 cut(s) 81, 117, 219, 451, 1088, 1140
MboI GATC 6 cut(s) 79, 115, 217, 449, 1086, 1138
MboII GAAGA 9 cut(s) 216, 333, 415, 808, 827, 902, 988, 1033, 1205
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 583
MlsI TGGCCA 1 cut(s) 1165
MluCI AATT 3 cut(s) 73, 368, 697
MluNI TGGCCA 1 cut(s) 1165
MlyI GAGTC 1 cut(s) 978
MnlI CCTC 8 cut(s) 22, 56, 200, 325, 613, 769, 786, 799
Mox20I TGGCCA 1 cut(s) 1165
MroXI GAANNNNTTC 1 cut(s) 340
MscI TGGCCA 1 cut(s) 1165
MseI TTAA 6 cut(s) 270, 318, 371, 393, 863, 884
Msp20I TGGCCA 1 cut(s) 1165
MspA1I CMGCKG 1 cut(s) 659
MspI CCGG 2 cut(s) 66, 96
MspR9I CCNGG 1 cut(s) 1008
MvaI CCWGG 1 cut(s) 1008
MwoI GCNNNNNNNGC 5 cut(s) 440, 488, 573, 653, 662
NdeI CATATG 2 cut(s) 607, 667
NdeII GATC 6 cut(s) 79, 115, 217, 449, 1086, 1138
NlaIII CATG 4 cut(s) 233, 486, 1109, 1190
NlaIV GGNNCC 2 cut(s) 304, 933
NspI RCATGY 1 cut(s) 486
PaeI GCATGC 1 cut(s) 486
PdmI GAANNNNTTC 1 cut(s) 340
PfeI GAWTC 3 cut(s) 746, 911, 925
PinAI ACCGGT 1 cut(s) 65
PkrI GCNGC 5 cut(s) 53, 238, 442, 658, 706
Ple19I CGATCG 1 cut(s) 82
PleI GAGTC 1 cut(s) 978
PpsI GAGTC 1 cut(s) 978
Ppu21I YACGTR 1 cut(s) 710
Psp6I CCWGG 1 cut(s) 1006
PspFI CCCAGC 2 cut(s) 384, 611
PspGI CCWGG 1 cut(s) 1006
PspN4I GGNNCC 2 cut(s) 304, 933
PspPI GGNCC 4 cut(s) 248, 560, 932, 1010
PstNI CAGNNNCTG 1 cut(s) 641
PsuI RGATCY 1 cut(s) 217
PvuI CGATCG 1 cut(s) 82
PvuII CAGCTG 1 cut(s) 659
RsaI GTAC 3 cut(s) 604, 712, 760
RsaNI GTAC 3 cut(s) 603, 711, 759
SaqAI TTAA 6 cut(s) 270, 318, 371, 393, 863, 884
SatI GCNGC 5 cut(s) 52, 237, 441, 657, 705
Sau3AI GATC 6 cut(s) 79, 115, 217, 449, 1086, 1138
Sau96I GGNCC 4 cut(s) 248, 560, 932, 1010
ScaI AGTACT 1 cut(s) 760
SchI GAGTC 1 cut(s) 978
ScrFI CCNGG 1 cut(s) 1008
SduI GDGCHC 1 cut(s) 583
SfaNI GCATC 3 cut(s) 124, 189, 634
SfcI CTRYAG 1 cut(s) 197
SinI GGWCC 3 cut(s) 248, 932, 1010
SphI GCATGC 1 cut(s) 486
Sse9I AATT 3 cut(s) 73, 368, 697
SsiI CCGC 6 cut(s) 11, 52, 381, 576, 705, 773
SspI AATATT 1 cut(s) 157
SspMI CTAG 7 cut(s) 26, 225, 297, 617, 788, 908, 1082
StyD4I CCNGG 1 cut(s) 1006
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 6 cut(s) 21, 315, 477, 718, 1073, 1154
TaiI ACGT 2 cut(s) 712, 954
TaqI TCGA 3 cut(s) 78, 132, 150
TasI AATT 3 cut(s) 73, 368, 697
TatI WGTACW 2 cut(s) 602, 758
TauI GCSGC 2 cut(s) 54, 707
TfiI GAWTC 3 cut(s) 746, 911, 925
Tru1I TTAA 6 cut(s) 270, 318, 371, 393, 863, 884
Tru9I TTAA 6 cut(s) 270, 318, 371, 393, 863, 884
TscAI CASTG 1 cut(s) 26
TseI GCWGC 3 cut(s) 236, 440, 656
TspDTI ATGAA 3 cut(s) 759, 903, 1175
TspRI CASTG 1 cut(s) 26
VpaK11BI GGWCC 3 cut(s) 248, 932, 1010
XapI RAATTY 2 cut(s) 73, 697
XbaI TCTAGA 1 cut(s) 1081
XceI RCATGY 1 cut(s) 486
XmiI GTMKAC 2 cut(s) 496, 629
XmnI GAANNNNTTC 1 cut(s) 340
XspI CTAG 7 cut(s) 26, 225, 297, 617, 788, 908, 1082
ZrmI AGTACT 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.