Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034479.1

Orthogroup ID

OG0012117

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1010

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034479.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgggtcagtcgggtcagtggctagaaaaggcgttggtggatctatgccagaagatggaatcgggtttgggcttggatcgggatatgatttcgggtctagtctcctactgtgagctagctgatcccagagacgctaaagaataccttgataacataatagggcaggaggtggggaaatctgtgattgaggagtatctacagaaaagaggtcgttcagatctttgcagcagcaccccggatgttgcagccttgagtttacatgcatatgttaagccaccatcgaatgagttttctgtagggggaaccaagaaacaactgaaaacgccaaaagtggctaaagtacctagtcatcaggaagcttctagctctcagggaaagcctgttccggctcaggccagtgagtcaaggaccacaaataatgcaaaccaaagtaattctaagaagaagaaggctggaaaagttgtttcgcttgcggaggctgctaaaggatcaattgtattccagcaggggaagccatgcacgtgccaagcgcgtcgccaccggctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006810 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016604 GO:0016922 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030331 GO:0030518 GO:0030520 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031594 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0033993 GO:0035035 GO:0035257 GO:0035258 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043401 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045202 GO:0045595 GO:0045661 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048545 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051252 GO:0051254 GO:0051427 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0080090 GO:0099053 GO:0140110 GO:1901998 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2HC5

Protein Analysis

182

Amino Acids

19.65

Weight (kDa)

9.28

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47610
fragaria_vesca	FvH4_5g15050 FvH4_5g15050
malus_domestica	MD06G1192400.v1.1 MD14G1199100.v1.1
prunus_persica	Prupe.5G192200_v2.0.a1
pyrus_communis	pycom06g17050 pycom14g16520
rosa_chinensis	RchiOBHm_Chr7g0181151
rosa_laevigata	RLG00000005209
rosa_multiflora	Rmu_sc0020165.1_g000001 Rmu_sc0034479.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272230
rosa_rugosa	Rorug06G0438700
rosa_samantha	Rh7AG040800 Rh7BG040200 Rh7CG042200 Rh7DG040600
rosa_wichuraiana	Rw7G003370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	55
AccII	CGCG	1 cut(s)	532
AciI	CCGC	1 cut(s)	473
AclWI	GGATC	4 cut(s)	48, 84, 116, 496
AcvI	CACGTG	1 cut(s)	522
AfaI	GTAC	1 cut(s)	342
AfiI	CCNNNNNNNGG	1 cut(s)	55
AloI	GAACNNNNNNTCC	2 cut(s)	366, 398
AluBI	AGCT	4 cut(s)	115, 119, 359, 366
AluI	AGCT	4 cut(s)	115, 119, 359, 366
Alw26I	GTCTC	2 cut(s)	106, 123
AlwI	GGATC	4 cut(s)	48, 84, 116, 496
AoxI	GGCC	1 cut(s)	393
ApeKI	GCWGC	4 cut(s)	225, 228, 245, 479
AspLEI	GCGC	1 cut(s)	532
AspS9I	GGNCC	1 cut(s)	408
AsuC2I	CCSGG	1 cut(s)	236
AsuNHI	GCTAGC	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	408
BbrPI	CACGTG	1 cut(s)	522
BbvI	GCAGC	4 cut(s)	237, 240, 257, 466
BccI	CCATC	2 cut(s)	49, 286
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	106, 123
BfaI	CTAG	5 cut(s)	23, 98, 116, 345, 363
BfmI	CTRYAG	2 cut(s)	197, 294
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	4 cut(s)	226, 229, 246, 480
BlsI	GCNGC	4 cut(s)	227, 230, 247, 481
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	408
BmgT120I	GGNCC	1 cut(s)	408
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	1 cut(s)	236
BmtI	GCTAGC	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	271
BpuMI	CCSGG	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	522
BsaJI	CCNNGG	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse118I	RCCGGY	1 cut(s)	540
Bse1I	ACTGG	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	383, 404
BseNI	ACTGG	1 cut(s)	396
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	4 cut(s)	237, 240, 257, 466
Bsh1236I	CGCG	1 cut(s)	532
BshFI	GGCC	1 cut(s)	395
BsiSI	CCGG	3 cut(s)	236, 386, 541
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	2 cut(s)	106, 123
BsmBI	CGTCTC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	395
Bsp143I	GATC	5 cut(s)	40, 76, 121, 217, 488
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	1 cut(s)	395
BspCNI	CTCAG	2 cut(s)	382, 403
BspFNI	CGCG	1 cut(s)	532
BspLI	GGNNCC	1 cut(s)	304
BspOI	GCTAGC	1 cut(s)	119
BspPI	GGATC	4 cut(s)	48, 84, 116, 496
BsrFI	RCCGGY	1 cut(s)	540
BsrI	ACTGG	1 cut(s)	396
BssAI	RCCGGY	1 cut(s)	540
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	5 cut(s)	40, 76, 121, 217, 488
Bst4CI	ACNGT	1 cut(s)	110
BstBAI	YACGTR	1 cut(s)	522
BstC8I	GCNNGC	2 cut(s)	117, 471
BstDEI	CTNAG	3 cut(s)	369, 390, 438
BstF5I	GGATG	1 cut(s)	244
BstFNI	CGCG	1 cut(s)	532
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	5 cut(s)	43, 79, 124, 220, 491
BstMAI	GTCTC	2 cut(s)	106, 123
BstMBI	GATC	5 cut(s)	40, 76, 121, 217, 488
BstMWI	GCNNNNNNNGC	2 cut(s)	479, 511
BstNSI	RCATGY	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	234
BstSFI	CTRYAG	2 cut(s)	197, 294
BstUI	CGCG	1 cut(s)	532
BstV1I	GCAGC	4 cut(s)	237, 240, 257, 466
BstX2I	RGATCY	2 cut(s)	40, 217
BstYI	RGATCY	2 cut(s)	40, 217
BsuRI	GGCC	1 cut(s)	395
BtsCI	GGATG	1 cut(s)	244
BtsIMutI	CAGTG	2 cut(s)	23, 403
Cac8I	GCNNGC	2 cut(s)	117, 471
CfoI	GCGC	1 cut(s)	532
Cfr10I	RCCGGY	1 cut(s)	540
Cfr13I	GGNCC	1 cut(s)	408
CseI	GACGC	2 cut(s)	140, 521
Csp6I	GTAC	1 cut(s)	341
CviAII	CATG	2 cut(s)	260, 516
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	3 cut(s)	369, 390, 438
DpnI	GATC	5 cut(s)	42, 78, 123, 219, 490
DpnII	GATC	5 cut(s)	40, 76, 121, 217, 488
Eco47I	GGWCC	1 cut(s)	408
Eco72I	CACGTG	1 cut(s)	522
EcoT22I	ATGCAT	1 cut(s)	265
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	2 cut(s)	263, 519
FaiI	YATR	7 cut(s)	46, 86, 155, 261, 265, 267, 517
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	2 cut(s)	259, 515
FauNDI	CATATG	1 cut(s)	265
Fnu4HI	GCNGC	4 cut(s)	226, 229, 246, 480
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	4 cut(s)	226, 229, 246, 480
FspBI	CTAG	5 cut(s)	23, 98, 116, 345, 363
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	4 cut(s)	226, 229, 246, 480
HaeIII	GGCC	1 cut(s)	395
HapII	CCGG	3 cut(s)	236, 386, 541
HgaI	GACGC	2 cut(s)	140, 521
HhaI	GCGC	1 cut(s)	532
Hin1II	CATG	2 cut(s)	263, 519
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	2 cut(s)	59, 401
HpaII	CCGG	3 cut(s)	236, 386, 541
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	2 cut(s)	80, 353
Hpy8I	GTNNAC	1 cut(s)	257
Hpy99I	CGWCG	1 cut(s)	537
HpyAV	CCTTC	1 cut(s)	442
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	521
HpyCH4V	TGCA	5 cut(s)	225, 245, 263, 422, 519
HpyF10VI	GCNNNNNNNGC	2 cut(s)	479, 511
HpyF3I	CTNAG	3 cut(s)	369, 390, 438
HpySE526I	ACGT	1 cut(s)	521
Hsp92II	CATG	2 cut(s)	263, 519
HspAI	GCGC	1 cut(s)	530
Kzo9I	GATC	5 cut(s)	40, 76, 121, 217, 488
Lsp1109I	GCAGC	4 cut(s)	237, 240, 257, 466
MaeI	CTAG	5 cut(s)	23, 98, 116, 345, 363
MaeII	ACGT	1 cut(s)	521
MalI	GATC	5 cut(s)	42, 78, 123, 219, 490
MboI	GATC	5 cut(s)	40, 76, 121, 217, 488
MboII	GAAGA	3 cut(s)	64, 454, 457
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	2 cut(s)	40, 217
MluCI	AATT	2 cut(s)	433, 492
MlyI	GAGTC	1 cut(s)	410
MnlI	CCTC	4 cut(s)	160, 181, 200, 469
Mph1103I	ATGCAT	1 cut(s)	265
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	2 cut(s)	264, 520
MspI	CCGG	3 cut(s)	236, 386, 541
MspR9I	CCNGG	1 cut(s)	236
MunI	CAATTG	1 cut(s)	492
MvnI	CGCG	1 cut(s)	532
MwoI	GCNNNNNNNGC	2 cut(s)	479, 511
NciI	CCSGG	1 cut(s)	236
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	5 cut(s)	40, 76, 121, 217, 488
NheI	GCTAGC	1 cut(s)	115
NlaIII	CATG	2 cut(s)	263, 519
NlaIV	GGNNCC	1 cut(s)	304
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	59
PflMI	CCANNNNNTGG	1 cut(s)	55
PkrI	GCNGC	4 cut(s)	227, 230, 247, 481
PleI	GAGTC	1 cut(s)	409
PmaCI	CACGTG	1 cut(s)	522
PmlI	CACGTG	1 cut(s)	522
PpsI	GAGTC	1 cut(s)	409
Ppu21I	YACGTR	1 cut(s)	522
PspCI	CACGTG	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	1 cut(s)	408
PsuI	RGATCY	2 cut(s)	40, 217
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
RseI	CAYNNNNRTG	2 cut(s)	264, 520
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	4 cut(s)	226, 229, 246, 480
Sau3AI	GATC	5 cut(s)	40, 76, 121, 217, 488
Sau96I	GGNCC	1 cut(s)	408
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	1 cut(s)	236
SetI	ASST	9 cut(s)	117, 121, 147, 171, 211, 346, 361, 368, 524
SfcI	CTRYAG	2 cut(s)	197, 294
SinI	GGWCC	1 cut(s)	408
SmiMI	CAYNNNNRTG	2 cut(s)	264, 520
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
Sse9I	AATT	2 cut(s)	433, 492
SsiI	CCGC	1 cut(s)	473
SspMI	CTAG	5 cut(s)	23, 98, 116, 345, 363
StyD4I	CCNGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	1 cut(s)	524
TaqI	TCGA	1 cut(s)	281
TasI	AATT	2 cut(s)	433, 492
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	2 cut(s)	23, 403
TseI	GCWGC	4 cut(s)	225, 228, 245, 479
TspRI	CASTG	2 cut(s)	23, 403
Van91I	CCANNNNNTGG	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	408
XceI	RCATGY	1 cut(s)	263
XspI	CTAG	5 cut(s)	23, 98, 116, 345, 363
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.