Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012117

Physical Location & Seq

Genomic Coordinates Forward (+)

8520005 .. 8522337

Gene Structure 2333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15050.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGGTCAGTCGGGTCAATGGCTAGAGAAGGCGCTGGTGGATCTATGCCAGAAGATGGAATCGGGTTTGGGCTTGGATCAGGATATGATTTCGGGTCTGGTCTCCTACTGTGAGCTAGCTGATCCCAGAGACGCTAAAGAATACCTTGATAACATAATAGGGCAGAAGGTGGGGAAGTCTGTGATTGAGGAATATTTACAGAAAAGAGGGCGTTCTGATCTTTGCAGCGGGACCCCAAATGTTCCAACCTCGAGTTTACAGGCATATGTTAAGGCATCTTCAAGTGAGTATACTGTAAGTGGGACCAAGAAACAATTGAAAATGCCGAAAGTGGCTAAAGTACCGAGTCAGCAAGCAGCTTCTACTCCTTCTAGCTCTAAGGGAAAGCCTGTTCCGCCTCAAGCCAGTGAGTCAAGAACCACAAATAATGCAAACCAAAGTAATTCTAAGAAGAAGAAGGCAGGAAAAGTTGTTTCGCTTGCGGAGGCTGCTAAAGGATCGATTGTATTCCAGCAGGGCAAGCCATGCTCGTGCCAAGCGCGTCGCCACGGGCTTGTGAGTAATTGTTTATCATGTGGGAAGATAGTCTGTGAACAAGAGGGAGAGGGACCTTGCAATTTTTGTGGAGCTCTTGTGCTGAAGGAAGGGAGCAGTTATGCTGGTCTGGATGAGAGTTACACTCCTGTGGTGTCAGATGCGGAGGCAGCAGCTGAAGCTTATGCGAAGAGACTCGTTGAGTATGATAGAGACTCTGCAGCCCGTACAACAGTTATTGATGACCAAAGTGACTACTTTGAAATTGAGGGGAACAGCTGGTTATCAAAAGAGGAAAAGAAACTTCTAAAAGAGAAGCAGGAGCAAATTGAAGAAGCTGAGCGGGCCAAACGAAATAGAGTAGTTGTGACTTTTGATTTGTTTGGGCGCAAGCGCATGAATATTCTGCATTGTCTGAGGTTGCACATTTTTTCTTTTAACATTTGGTGTTCTGCAGGTACTTTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006810 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016604 GO:0016922 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030331 GO:0030518 GO:0030520 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031594 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0033993 GO:0035035 GO:0035257 GO:0035258 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043401 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045202 GO:0045595 GO:0045661 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048545 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051252 GO:0051254 GO:0051427 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0080090 GO:0099053 GO:0140110 GO:1901998 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2HC5

Protein Analysis

335

Amino Acids

36.56

Weight (kDa)

8.49

Isoelectric Point (pI)

55.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2HC5	PF06221	174 - 214	1.9e-12	Putative zinc finger motif, C2HC5-type
TRIP4_3rd	PF23134	260 - 311	6.8e-20	TRIP4, third domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47610
fragaria_vesca	FvH4_5g15050 FvH4_5g15050
malus_domestica	MD06G1192400.v1.1 MD14G1199100.v1.1
prunus_persica	Prupe.5G192200_v2.0.a1
pyrus_communis	pycom06g17050 pycom14g16520
rosa_chinensis	RchiOBHm_Chr7g0181151
rosa_laevigata	RLG00000005209
rosa_multiflora	Rmu_sc0020165.1_g000001 Rmu_sc0034479.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272230
rosa_rugosa	Rorug06G0438700
rosa_samantha	Rh7AG040800 Rh7BG040200 Rh7CG042200 Rh7DG040600
rosa_wichuraiana	Rw7G003370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	980
AccB7I	CCANNNNNTGG	1 cut(s)	55
AccBSI	CCGCTC	1 cut(s)	877
AccI	GTMKAC	1 cut(s)	290
AccII	CGCG	1 cut(s)	541
AciI	CCGC	5 cut(s)	228, 395, 482, 698, 877
AclWI	GGATC	4 cut(s)	48, 84, 116, 505
AcuI	CTGAAG	2 cut(s)	659, 732
AfaI	GTAC	3 cut(s)	342, 763, 994
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	5 cut(s)	282, 319, 797, 866, 1001
AleI	CACNNNNGTG	1 cut(s)	683
AloI	GAACNNNNNNTCC	2 cut(s)	375, 407
AluBI	AGCT	9 cut(s)	115, 119, 359, 375, 629, 710, 716, 813, 872
AluI	AGCT	9 cut(s)	115, 119, 359, 375, 629, 710, 716, 813, 872
Alw21I	GWGCWC	1 cut(s)	631
Alw26I	GTCTC	4 cut(s)	106, 123, 721, 741
AlwI	GGATC	4 cut(s)	48, 84, 116, 505
AlwNI	CAGNNNCTG	1 cut(s)	710
Ama87I	CYCGRG	1 cut(s)	250
AoxI	GGCC	1 cut(s)	879
ApeKI	GCWGC	6 cut(s)	225, 356, 488, 704, 707, 755
ArsI	GACNNNNNNTTYG	2 cut(s)	895, 927
AspLEI	GCGC	4 cut(s)	34, 541, 924, 930
AspS9I	GGNCC	4 cut(s)	231, 303, 608, 879
AsuNHI	GCTAGC	1 cut(s)	115
AvaI	CYCGRG	1 cut(s)	250
AvaII	GGWCC	3 cut(s)	231, 303, 608
BanII	GRGCYC	1 cut(s)	631
BauI	CACGAG	1 cut(s)	529
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	6 cut(s)	237, 368, 475, 716, 719, 767
BccI	CCATC	1 cut(s)	49
BcoDI	GTCTC	4 cut(s)	106, 123, 721, 741
BfaI	CTAG	3 cut(s)	23, 116, 372
BfmI	CTRYAG	2 cut(s)	753, 987
BfoI	RGCGCY	1 cut(s)	35
BfuAI	ACCTGC	1 cut(s)	980
BisI	GCNGC	6 cut(s)	226, 357, 489, 705, 708, 756
BlpI	GCTNAGC	1 cut(s)	873
BlsI	GCNGC	6 cut(s)	227, 358, 490, 706, 709, 757
Bme18I	GGWCC	3 cut(s)	231, 303, 608
BmeT110I	CYCGRG	1 cut(s)	250
BmgT120I	GGNCC	4 cut(s)	231, 303, 608, 879
BmiI	GGNNCC	4 cut(s)	232, 233, 304, 609
BmsI	GCATC	2 cut(s)	284, 685
BmtI	GCTAGC	1 cut(s)	119
BplI	GAGNNNNNCTC	2 cut(s)	664, 696
Bpu1102I	GCTNAGC	1 cut(s)	873
BpuEI	CTTGAG	1 cut(s)	384
Bsa29I	ATCGAT	1 cut(s)	500
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	547
BsaXI	ACNNNNNCTCC	2 cut(s)	618, 648
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	405
BseCI	ATCGAT	1 cut(s)	500
BseDI	CCNNGG	1 cut(s)	547
BseGI	GGATG	1 cut(s)	673
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	2 cut(s)	864, 941
BseNI	ACTGG	1 cut(s)	405
BseXI	GCAGC	6 cut(s)	237, 368, 475, 716, 719, 767
Bsh1236I	CGCG	1 cut(s)	541
BshFI	GGCC	1 cut(s)	881
BshVI	ATCGAT	1 cut(s)	500
BsiHKAI	GWGCWC	1 cut(s)	631
BsiHKCI	CYCGRG	1 cut(s)	250
BslFI	GGGAC	3 cut(s)	244, 316, 621
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	4 cut(s)	106, 123, 721, 741
BsmBI	CGTCTC	1 cut(s)	123
BsmFI	GGGAC	3 cut(s)	244, 316, 621
BsnI	GGCC	1 cut(s)	881
Bso31I	GGTCTC	1 cut(s)	106
BsoBI	CYCGRG	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	631
Bsp143I	GATC	5 cut(s)	40, 76, 121, 217, 497
Bsp1720I	GCTNAGC	1 cut(s)	873
BspACI	CCGC	5 cut(s)	228, 395, 482, 698, 877
BspANI	GGCC	1 cut(s)	881
BspCNI	CTCAG	2 cut(s)	865, 942
BspDI	ATCGAT	1 cut(s)	500
BspFNI	CGCG	1 cut(s)	541
BspLI	GGNNCC	4 cut(s)	232, 233, 304, 609
BspMAI	CTGCAG	2 cut(s)	757, 991
BspMI	ACCTGC	1 cut(s)	980
BspOI	GCTAGC	1 cut(s)	119
BspPI	GGATC	4 cut(s)	48, 84, 116, 505
BspTNI	GGTCTC	1 cut(s)	106
BsrBI	CCGCTC	1 cut(s)	877
BsrI	ACTGG	1 cut(s)	405
BssECI	CCNNGG	1 cut(s)	547
BssMI	GATC	5 cut(s)	40, 76, 121, 217, 497
BssNAI	GTATAC	1 cut(s)	291
BssSI	CACGAG	1 cut(s)	529
Bst1107I	GTATAC	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	529
Bst4CI	ACNGT	3 cut(s)	110, 295, 769
Bst6I	CTCTTC	1 cut(s)	719
BstAPI	GCANNNNNTGC	1 cut(s)	525
BstC8I	GCNNGC	6 cut(s)	117, 354, 480, 521, 879, 926
BstDEI	CTNAG	4 cut(s)	378, 447, 873, 950
BstDSI	CCRYGG	1 cut(s)	547
BstF5I	GGATG	1 cut(s)	673
BstFNI	CGCG	1 cut(s)	541
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	4 cut(s)	34, 541, 924, 930
BstKTI	GATC	5 cut(s)	43, 79, 124, 220, 500
BstMAI	GTCTC	4 cut(s)	106, 123, 721, 741
BstMBI	GATC	5 cut(s)	40, 76, 121, 217, 497
BstMWI	GCNNNNNNNGC	7 cut(s)	394, 488, 520, 525, 704, 713, 878
BstSFI	CTRYAG	2 cut(s)	753, 987
BstUI	CGCG	1 cut(s)	541
BstV1I	GCAGC	6 cut(s)	237, 368, 475, 716, 719, 767
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BstZ17I	GTATAC	1 cut(s)	291
Bsu15I	ATCGAT	1 cut(s)	500
BsuRI	GGCC	1 cut(s)	881
BsuTUI	ATCGAT	1 cut(s)	500
BtgI	CCRYGG	1 cut(s)	547
BtsCI	GGATG	1 cut(s)	673
BtsIMutI	CAGTG	1 cut(s)	412
BveI	ACCTGC	1 cut(s)	980
Cac8I	GCNNGC	6 cut(s)	117, 354, 480, 521, 879, 926
CaiI	CAGNNNCTG	1 cut(s)	710
CfoI	GCGC	4 cut(s)	34, 541, 924, 930
Cfr13I	GGNCC	4 cut(s)	231, 303, 608, 879
ClaI	ATCGAT	1 cut(s)	500
CseI	GACGC	2 cut(s)	140, 530
Csp6I	GTAC	3 cut(s)	341, 762, 993
CspCI	CAANNNNNGTGG	2 cut(s)	604, 639
CviAII	CATG	3 cut(s)	525, 573, 931
CviQI	GTAC	3 cut(s)	341, 762, 993
DdeI	CTNAG	4 cut(s)	378, 447, 873, 950
DpnI	GATC	5 cut(s)	42, 78, 123, 219, 499
DpnII	GATC	5 cut(s)	40, 76, 121, 217, 497
Eam1104I	CTCTTC	1 cut(s)	719
EarI	CTCTTC	1 cut(s)	719
EciI	GGCGGA	1 cut(s)	384
Ecl136II	GAGCTC	1 cut(s)	629
Eco24I	GRGCYC	1 cut(s)	631
Eco31I	GGTCTC	1 cut(s)	106
Eco47I	GGWCC	3 cut(s)	231, 303, 608
Eco53kI	GAGCTC	1 cut(s)	629
Eco57I	CTGAAG	2 cut(s)	659, 732
Eco88I	CYCGRG	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	629
EcoO109I	RGGNCCY	2 cut(s)	231, 608
EcoT38I	GRGCYC	1 cut(s)	631
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	3 cut(s)	528, 576, 934
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	3 cut(s)	244, 316, 621
FatI	CATG	3 cut(s)	524, 572, 930
FauI	CCCGC	2 cut(s)	221, 870
FauNDI	CATATG	1 cut(s)	265
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	6 cut(s)	226, 357, 489, 705, 708, 756
FokI	GGATG	1 cut(s)	680
FriOI	GRGCYC	1 cut(s)	631
Fsp4HI	GCNGC	6 cut(s)	226, 357, 489, 705, 708, 756
FspBI	CTAG	3 cut(s)	23, 116, 372
GlaI	GCGC	4 cut(s)	33, 540, 923, 929
GluI	GCNGC	6 cut(s)	226, 357, 489, 705, 708, 756
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	881
HgaI	GACGC	2 cut(s)	140, 530
HhaI	GCGC	4 cut(s)	34, 541, 924, 930
Hin1II	CATG	3 cut(s)	528, 576, 934
Hin6I	GCGC	4 cut(s)	32, 539, 922, 928
HinP1I	GCGC	4 cut(s)	32, 539, 922, 928
HindIII	AAGCTT	1 cut(s)	714
HinfI	GANTC	5 cut(s)	59, 346, 410, 729, 749
Hpy166II	GTNNAC	3 cut(s)	257, 291, 593
Hpy188I	TCNGA	3 cut(s)	217, 694, 951
Hpy188III	TCNNGA	3 cut(s)	80, 414, 665
Hpy8I	GTNNAC	3 cut(s)	257, 291, 593
Hpy99I	CGWCG	1 cut(s)	546
HpyAV	CCTTC	6 cut(s)	22, 160, 378, 451, 634, 638
HpyCH4III	ACNGT	3 cut(s)	110, 295, 769
HpyCH4V	TGCA	7 cut(s)	225, 431, 615, 755, 943, 958, 989
HpyF10VI	GCNNNNNNNGC	7 cut(s)	394, 488, 520, 525, 704, 713, 878
HpyF3I	CTNAG	4 cut(s)	378, 447, 873, 950
Hsp92II	CATG	3 cut(s)	528, 576, 934
HspAI	GCGC	4 cut(s)	32, 539, 922, 928
KflI	GGGWCCC	1 cut(s)	231
Kzo9I	GATC	5 cut(s)	40, 76, 121, 217, 497
LmnI	GCTCC	3 cut(s)	626, 648, 856
Lsp1109I	GCAGC	6 cut(s)	237, 368, 475, 716, 719, 767
LweI	GCATC	2 cut(s)	284, 685
MaeI	CTAG	3 cut(s)	23, 116, 372
MaeIII	GTNAC	3 cut(s)	674, 785, 901
MalI	GATC	5 cut(s)	42, 78, 123, 219, 499
MbiI	CCGCTC	1 cut(s)	877
MboI	GATC	5 cut(s)	40, 76, 121, 217, 497
MboII	GAAGA	7 cut(s)	64, 270, 463, 466, 592, 736, 878
MfeI	CAATTG	1 cut(s)	314
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	631
MluCI	AATT	6 cut(s)	314, 442, 562, 616, 798, 861
MlyI	GAGTC	4 cut(s)	355, 419, 723, 743
MmeI	TCCRAC	1 cut(s)	269
MseI	TTAA	2 cut(s)	270, 972
MslI	CAYNNNNRTG	2 cut(s)	529, 683
MspA1I	CMGCKG	3 cut(s)	228, 710, 813
MunI	CAATTG	1 cut(s)	314
MvnI	CGCG	1 cut(s)	541
MwoI	GCNNNNNNNGC	7 cut(s)	394, 488, 520, 525, 704, 713, 878
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	5 cut(s)	40, 76, 121, 217, 497
NheI	GCTAGC	1 cut(s)	115
NlaIII	CATG	3 cut(s)	528, 576, 934
NlaIV	GGNNCC	4 cut(s)	232, 233, 304, 609
NmuCI	GTSAC	2 cut(s)	785, 901
OliI	CACNNNNGTG	1 cut(s)	683
PaeR7I	CTCGAG	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	59
PflMI	CCANNNNNTGG	1 cut(s)	55
PkrI	GCNGC	6 cut(s)	227, 358, 490, 706, 709, 757
PleI	GAGTC	4 cut(s)	354, 418, 723, 743
PpsI	GAGTC	4 cut(s)	354, 418, 723, 743
PpuMI	RGGWCCY	2 cut(s)	231, 608
Psp124BI	GAGCTC	1 cut(s)	631
Psp5II	RGGWCCY	2 cut(s)	231, 608
PspN4I	GGNNCC	4 cut(s)	232, 233, 304, 609
PspPI	GGNCC	4 cut(s)	231, 303, 608, 879
PspPPI	RGGWCCY	2 cut(s)	231, 608
PspXI	VCTCGAGB	1 cut(s)	250
PstI	CTGCAG	2 cut(s)	757, 991
PstNI	CAGNNNCTG	1 cut(s)	710
PsuI	RGATCY	1 cut(s)	40
PvuII	CAGCTG	2 cut(s)	710, 813
RsaI	GTAC	3 cut(s)	342, 763, 994
RsaNI	GTAC	3 cut(s)	341, 762, 993
RseI	CAYNNNNRTG	2 cut(s)	529, 683
SacI	GAGCTC	1 cut(s)	631
SaqAI	TTAA	2 cut(s)	270, 972
SatI	GCNGC	6 cut(s)	226, 357, 489, 705, 708, 756
Sau3AI	GATC	5 cut(s)	40, 76, 121, 217, 497
Sau96I	GGNCC	4 cut(s)	231, 303, 608, 879
SchI	GAGTC	4 cut(s)	355, 419, 723, 743
SduI	GDGCHC	1 cut(s)	631
SfaNI	GCATC	2 cut(s)	284, 685
SfcI	CTRYAG	2 cut(s)	753, 987
Sfr274I	CTCGAG	1 cut(s)	250
SinI	GGWCC	3 cut(s)	231, 303, 608
SlaI	CTCGAG	1 cut(s)	250
SmiMI	CAYNNNNRTG	2 cut(s)	529, 683
SmlI	CTYRAG	2 cut(s)	250, 399
SmoI	CTYRAG	2 cut(s)	250, 399
Sse9I	AATT	6 cut(s)	314, 442, 562, 616, 798, 861
SsiI	CCGC	5 cut(s)	228, 395, 482, 698, 877
SspI	AATATT	2 cut(s)	194, 937
SspMI	CTAG	3 cut(s)	23, 116, 372
SstI	GAGCTC	1 cut(s)	631
TaaI	ACNGT	3 cut(s)	110, 295, 769
TaqI	TCGA	2 cut(s)	251, 500
TasI	AATT	6 cut(s)	314, 442, 562, 616, 798, 861
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	2 cut(s)	270, 972
Tru9I	TTAA	2 cut(s)	270, 972
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	2 cut(s)	785, 901
TseI	GCWGC	6 cut(s)	225, 356, 488, 704, 707, 755
Tsp45I	GTSAC	2 cut(s)	785, 901
TspDTI	ATGAA	1 cut(s)	947
TspRI	CASTG	1 cut(s)	412
Van91I	CCANNNNNTGG	1 cut(s)	55
VpaK11BI	GGWCC	3 cut(s)	231, 303, 608
XhoI	CTCGAG	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	290
XspI	CTAG	3 cut(s)	23, 116, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.