Rorug06G0438700
BHLH Family

Belongs to the nucleosome assembly protein (NAP) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
57218997 .. 57254440
35444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0438700.1

Sequence Viewer

Length: 1179 bp
ATGGCCGCCATGGATGAGAAGTTGTCAAGTGGAAACAGAGGGAAGCCTATTCGATGCAGAGCTGCGGTCTCTCGCAAGCCAGGTGAGCCACTAGTGATGGAAGAGATCATGGTGGCGCCGCCAATGCCCCATGAAGTTCGCGTTCGGATTGTCTATACTTCTCTGTGTCACAGTGATATCACTTTTTGGAAAATGAAGGACTTTCCTGGAGTCTTCCCTAGAATTCTCGGTCATGAAGCTATTGGGGTTGTGGAGAGTGTTGGGGAGGATGTGACTGAGGTAGCCGAAGGAGATACTGTCATCCCCACATTGATTTCGGATTGTGGAGAATGTGTAGATTGCCGATCAACAAAGAGCAATCTTTGTTCAAAACTTCCCTTCAAGATCTCACCTTTTATGCCAAGACATGAGACAAGCAGATTCACAGACCTCAATGGCGAGGTTATACACCATTTTGTATCTGTATCTAGTTTTAGCGAGTATACAGTGGTGGACATAGCCCATCTCACAAAGATTGACTCTGCAATACCTTTAACCAAGGCTGCAGGCCTTCTAGGTTGTGGAGTATCAACAGGGGTTGGTGCTGCTTGGAGAACAGCAAATGTGGAGCCGGGATCAACTGTGGCTATATTTGGGCTTGGTTCAATTGGATTGGCTGTGGCAGAGGGTGCAAGACTGTGTGGAGCTACTAGAATTATCGGGGTGGATGTTAACCAAGACAAATTTGAAATTGGAAAGAAGTTTGGAGTCACTGACTTCATCAACCCTGCAAATTGTGAGAATAAATCTGTGACAGAGGTGATGATTGAGATGACTGACGGGGGTGCAGATTATTGCTTTGAATGTGTTGGAATTGCATCACTGGTGCAACAAGCTTATGCTTGCTGCCGGAAGGGTTGGGGAAAAACAATTGTATTAGGTGTGGACCAGCCAGGGTCGCAGTTGACCCTTCCTTCATACGATGTGCTTCATAAGGGTAAAACCCTCATGGGATCCTTCTTTGGAGGACTCAAACCTAAGTCGGATATCCCTGTGCTCCTGAATCGCTACATCAACAAGGAACTACAACTAGATGAGTTTGTGACACATGAGGTGACATTTGAAGACATCAACAAAGCTTTTGATTTACTCATTGAAGGGAAATGTCTCCGTTGTGTAATCTGTATGAACAACCAGTAA

Protein Analysis

392

Amino Acids

42.5

Weight (kDa)

5.67

Isoelectric Point (pI)

32.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 43 - 173 1.1e-20 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 216 - 347 1.4e-27 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000433)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62480 AT5G62480 AT5G62480
fragaria_vesca FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis pycom06g17020
rosa_chinensis RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 115
AccI GTMKAC 1 cut(s) 482
AccII CGCG 1 cut(s) 141
AciI CCGC 3 cut(s) 6, 65, 119
AclWI GGATC 3 cut(s) 622, 987, 1000
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 222, 722
AcyI GRCGYC 1 cut(s) 116
AgsI TTSAA 7 cut(s) 369, 382, 645, 728, 842, 1103, 1136
AhlI ACTAGT 1 cut(s) 91
AjnI CCWGG 3 cut(s) 79, 205, 931
AluBI AGCT 5 cut(s) 62, 239, 686, 875, 1118
AluI AGCT 5 cut(s) 62, 239, 686, 875, 1118
Alw21I GWGCWC 1 cut(s) 1038
Alw26I GTCTC 3 cut(s) 73, 404, 1151
AlwI GGATC 3 cut(s) 622, 987, 1000
AoxI GGCC 2 cut(s) 3, 547
ApeKI GCWGC 4 cut(s) 62, 542, 584, 885
ApoI RAATTY 2 cut(s) 222, 722
AspLEI GCGC 1 cut(s) 118
AspS9I GGNCC 1 cut(s) 925
AsuC2I CCSGG 1 cut(s) 612
AsuHPI GGTGA 4 cut(s) 95, 381, 811, 1105
AvaII GGWCC 1 cut(s) 925
BamHI GGATCC 1 cut(s) 992
BanI GGYRCC 1 cut(s) 115
BbsI GAAGAC 2 cut(s) 205, 1110
Bbv12I GWGCWC 1 cut(s) 1038
BbvI GCAGC 4 cut(s) 49, 529, 571, 872
BccI CCATC 2 cut(s) 91, 510
BciT130I CCWGG 3 cut(s) 81, 207, 933
BcnI CCSGG 1 cut(s) 612
BcoDI GTCTC 3 cut(s) 73, 404, 1151
BcuI ACTAGT 1 cut(s) 91
BfaI CTAG 6 cut(s) 92, 219, 468, 554, 690, 1070
BfmI CTRYAG 1 cut(s) 543
BfoI RGCGCY 1 cut(s) 119
BglII AGATCT 1 cut(s) 384
BisI GCNGC 6 cut(s) 6, 63, 119, 543, 585, 886
BlsI GCNGC 6 cut(s) 7, 64, 120, 544, 586, 887
Bme1390I CCNGG 4 cut(s) 81, 207, 612, 933
Bme18I GGWCC 1 cut(s) 925
BmgT120I GGNCC 1 cut(s) 925
BmiI GGNNCC 3 cut(s) 117, 609, 994
BmrFI CCNGG 4 cut(s) 81, 207, 612, 933
BmsI GCATC 2 cut(s) 44, 866
BpiI GAAGAC 2 cut(s) 205, 1110
BpmI CTGGAG 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 612
BsaHI GRCGYC 1 cut(s) 116
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 3 cut(s) 9, 537, 932
BsaXI ACNNNNNCTCC 4 cut(s) 282, 312, 318, 348
Bse1I ACTGG 2 cut(s) 867, 1174
BseBI CCWGG 3 cut(s) 81, 207, 933
BseDI CCNNGG 3 cut(s) 9, 537, 932
BseGI GGATG 4 cut(s) 19, 274, 300, 712
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 2 cut(s) 867, 1174
BseXI GCAGC 4 cut(s) 49, 529, 571, 872
BsgI GTGCAG 1 cut(s) 846
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 2 cut(s) 5, 549
BshNI GGYRCC 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 1038
BsiSI CCGG 2 cut(s) 611, 889
BsmAI GTCTC 3 cut(s) 73, 404, 1151
BsnI GGCC 2 cut(s) 5, 549
Bso31I GGTCTC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 1038
Bsp143I GATC 5 cut(s) 105, 344, 384, 614, 992
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 3 cut(s) 6, 65, 119
BspANI GGCC 2 cut(s) 5, 549
BspCNI CTCAG 1 cut(s) 268
BspFNI CGCG 1 cut(s) 141
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 3 cut(s) 117, 609, 994
BspMAI CTGCAG 1 cut(s) 547
BspPI GGATC 3 cut(s) 622, 987, 1000
BspT107I GGYRCC 1 cut(s) 115
BspTNI GGTCTC 1 cut(s) 73
BsrI ACTGG 2 cut(s) 867, 1174
BssECI CCNNGG 3 cut(s) 9, 537, 932
BssMI GATC 5 cut(s) 105, 344, 384, 614, 992
BssNAI GTATAC 1 cut(s) 483
BssNI GRCGYC 1 cut(s) 116
BssT1I CCWWGG 2 cut(s) 9, 537
Bst1107I GTATAC 1 cut(s) 483
Bst2UI CCWGG 3 cut(s) 81, 207, 933
Bst4CI ACNGT 5 cut(s) 173, 298, 487, 622, 678
Bst6I CTCTTC 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 668
BstC8I GCNNGC 3 cut(s) 77, 547, 883
BstDEI CTNAG 2 cut(s) 276, 1017
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 4 cut(s) 19, 274, 300, 712
BstFNI CGCG 1 cut(s) 141
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 5 cut(s) 108, 347, 387, 617, 995
BstMAI GTCTC 3 cut(s) 73, 404, 1151
BstMBI GATC 5 cut(s) 105, 344, 384, 614, 992
BstMWI GCNNNNNNNGC 4 cut(s) 85, 124, 668, 937
BstNI CCWGG 3 cut(s) 81, 207, 933
BstSCI CCNGG 4 cut(s) 79, 205, 610, 931
BstSFI CTRYAG 1 cut(s) 543
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 4 cut(s) 49, 529, 571, 872
BstV2I GAAGAC 2 cut(s) 205, 1110
BstX2I RGATCY 2 cut(s) 384, 992
BstYI RGATCY 2 cut(s) 384, 992
BstZ17I GTATAC 1 cut(s) 483
BsuRI GGCC 2 cut(s) 5, 549
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 4 cut(s) 19, 274, 300, 712
BtsIMutI CAGTG 4 cut(s) 178, 492, 750, 860
Cac8I GCNNGC 3 cut(s) 77, 547, 883
CciI TCATGA 1 cut(s) 232
CfoI GCGC 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 925
CviAII CATG 7 cut(s) 10, 109, 131, 233, 407, 988, 1088
DdeI CTNAG 2 cut(s) 276, 1017
DinI GGCGCC 1 cut(s) 117
DpnI GATC 5 cut(s) 107, 346, 386, 616, 994
DpnII GATC 5 cut(s) 105, 344, 384, 614, 992
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 2 cut(s) 9, 537
Eco147I AGGCCT 1 cut(s) 549
Eco31I GGTCTC 1 cut(s) 73
Eco32I GATATC 2 cut(s) 178, 1027
Eco47I GGWCC 1 cut(s) 925
EcoRI GAATTC 1 cut(s) 222
EcoRII CCWGG 3 cut(s) 79, 205, 931
EcoRV GATATC 2 cut(s) 178, 1027
EcoT14I CCWWGG 2 cut(s) 9, 537
EgeI GGCGCC 1 cut(s) 117
EheI GGCGCC 1 cut(s) 117
ErhI CCWWGG 2 cut(s) 9, 537
FaeI CATG 7 cut(s) 13, 112, 134, 236, 410, 991, 1091
FatI CATG 7 cut(s) 9, 108, 130, 232, 406, 987, 1087
FblI GTMKAC 1 cut(s) 482
Fnu4HI GCNGC 6 cut(s) 6, 63, 119, 543, 585, 886
FokI GGATG 4 cut(s) 26, 281, 287, 719
Fsp4HI GCNGC 6 cut(s) 6, 63, 119, 543, 585, 886
FspBI CTAG 6 cut(s) 92, 219, 468, 554, 690, 1070
GlaI GCGC 1 cut(s) 117
GluI GCNGC 6 cut(s) 6, 63, 119, 543, 585, 886
GsuI CTGGAG 1 cut(s) 228
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 2 cut(s) 5, 549
HapII CCGG 2 cut(s) 611, 889
HhaI GCGC 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 116
Hin1II CATG 7 cut(s) 13, 112, 134, 236, 410, 991, 1091
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HincII GTYRAC 2 cut(s) 712, 945
HindII GTYRAC 2 cut(s) 712, 945
HindIII AAGCTT 2 cut(s) 873, 1116
HinfI GANTC 6 cut(s) 210, 420, 518, 747, 1008, 1042
HpaI GTTAAC 1 cut(s) 712
HpaII CCGG 2 cut(s) 611, 889
HphI GGTGA 4 cut(s) 95, 381, 811, 1105
Hpy166II GTNNAC 5 cut(s) 483, 493, 712, 925, 945
Hpy188I TCNGA 3 cut(s) 147, 319, 1024
Hpy188III TCNNGA 3 cut(s) 233, 382, 1039
Hpy8I GTNNAC 5 cut(s) 483, 493, 712, 925, 945
HpyAV CCTTC 9 cut(s) 190, 281, 388, 560, 886, 959, 963, 1006, 1130
HpyCH4III ACNGT 5 cut(s) 173, 298, 487, 622, 678
HpyCH4V TGCA 8 cut(s) 57, 524, 545, 671, 770, 827, 857, 868
HpyF10VI GCNNNNNNNGC 4 cut(s) 85, 124, 668, 937
HpyF3I CTNAG 2 cut(s) 276, 1017
Hsp92I GRCGYC 1 cut(s) 116
Hsp92II CATG 7 cut(s) 13, 112, 134, 236, 410, 991, 1091
HspAI GCGC 1 cut(s) 116
KasI GGCGCC 1 cut(s) 115
KspAI GTTAAC 1 cut(s) 712
Kzo9I GATC 5 cut(s) 105, 344, 384, 614, 992
LmnI GCTCC 3 cut(s) 607, 683, 1041
Lsp1109I GCAGC 4 cut(s) 49, 529, 571, 872
LweI GCATC 2 cut(s) 44, 866
MaeI CTAG 6 cut(s) 92, 219, 468, 554, 690, 1070
MaeIII GTNAC 6 cut(s) 167, 271, 748, 790, 1081, 1093
MalI GATC 5 cut(s) 107, 346, 386, 616, 994
MboI GATC 5 cut(s) 105, 344, 384, 614, 992
MboII GAAGA 3 cut(s) 113, 205, 1115
MfeI CAATTG 2 cut(s) 645, 909
MflI RGATCY 2 cut(s) 384, 992
MhlI GDGCHC 1 cut(s) 1038
MluCI AATT 8 cut(s) 222, 645, 693, 722, 729, 772, 852, 909
Mly113I GGCGCC 1 cut(s) 116
MlyI GAGTC 4 cut(s) 219, 512, 756, 1002
MmeI TCCRAC 2 cut(s) 829, 1002
MseI TTAA 2 cut(s) 533, 711
MspI CCGG 2 cut(s) 611, 889
MspR9I CCNGG 4 cut(s) 81, 207, 612, 933
MunI CAATTG 2 cut(s) 645, 909
MvaI CCWGG 3 cut(s) 81, 207, 933
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 4 cut(s) 85, 124, 668, 937
NarI GGCGCC 1 cut(s) 116
NciI CCSGG 1 cut(s) 612
NcoI CCATGG 1 cut(s) 9
NdeII GATC 5 cut(s) 105, 344, 384, 614, 992
NlaIII CATG 7 cut(s) 13, 112, 134, 236, 410, 991, 1091
NlaIV GGNNCC 3 cut(s) 117, 609, 994
NmuCI GTSAC 6 cut(s) 167, 271, 748, 790, 1081, 1093
PagI TCATGA 1 cut(s) 232
PceI AGGCCT 1 cut(s) 549
PfeI GAWTC 2 cut(s) 420, 1042
PfoI TCCNGGA 1 cut(s) 205
PkrI GCNGC 6 cut(s) 7, 64, 120, 544, 586, 887
PleI GAGTC 4 cut(s) 218, 512, 755, 1002
PluTI GGCGCC 1 cut(s) 119
PpsI GAGTC 4 cut(s) 218, 512, 755, 1002
Psp6I CCWGG 3 cut(s) 79, 205, 931
PspGI CCWGG 3 cut(s) 79, 205, 931
PspN4I GGNNCC 3 cut(s) 117, 609, 994
PspPI GGNCC 1 cut(s) 925
PstI CTGCAG 1 cut(s) 547
PsuI RGATCY 2 cut(s) 384, 992
SaqAI TTAA 2 cut(s) 533, 711
SatI GCNGC 6 cut(s) 6, 63, 119, 543, 585, 886
Sau3AI GATC 5 cut(s) 105, 344, 384, 614, 992
Sau96I GGNCC 1 cut(s) 925
SchI GAGTC 4 cut(s) 219, 512, 756, 1002
ScrFI CCNGG 4 cut(s) 81, 207, 612, 933
SduI GDGCHC 1 cut(s) 1038
SfaNI GCATC 2 cut(s) 44, 866
SfcI CTRYAG 1 cut(s) 543
SfoI GGCGCC 1 cut(s) 117
SinI GGWCC 1 cut(s) 925
SpeI ACTAGT 1 cut(s) 91
Sse9I AATT 8 cut(s) 222, 645, 693, 722, 729, 772, 852, 909
SseBI AGGCCT 1 cut(s) 549
SsiI CCGC 3 cut(s) 6, 65, 119
SspDI GGCGCC 1 cut(s) 115
SspMI CTAG 6 cut(s) 92, 219, 468, 554, 690, 1070
StuI AGGCCT 1 cut(s) 549
StyD4I CCNGG 4 cut(s) 79, 205, 610, 931
StyI CCWWGG 2 cut(s) 9, 537
TaaI ACNGT 5 cut(s) 173, 298, 487, 622, 678
TaqI TCGA 1 cut(s) 52
TaqII GACCGA 1 cut(s) 218
TasI AATT 8 cut(s) 222, 645, 693, 722, 729, 772, 852, 909
TauI GCSGC 2 cut(s) 8, 121
TfiI GAWTC 2 cut(s) 420, 1042
Tru1I TTAA 2 cut(s) 533, 711
Tru9I TTAA 2 cut(s) 533, 711
TscAI CASTG 4 cut(s) 178, 492, 757, 867
TseFI GTSAC 6 cut(s) 167, 271, 748, 790, 1081, 1093
TseI GCWGC 4 cut(s) 62, 542, 584, 885
Tsp45I GTSAC 6 cut(s) 167, 271, 748, 790, 1081, 1093
TspDTI ATGAA 6 cut(s) 147, 209, 249, 748, 945, 959
TspGWI ACGGA 1 cut(s) 1139
TspRI CASTG 4 cut(s) 178, 492, 757, 867
VpaK11BI GGWCC 1 cut(s) 925
XapI RAATTY 2 cut(s) 222, 722
XmiI GTMKAC 1 cut(s) 482
XspI CTAG 6 cut(s) 92, 219, 468, 554, 690, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.