Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Forward (+)

2744309 .. 2745408

Gene Structure 1100 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G003440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGACAGGGAAAGACAGTGTGATATTACATGGGATGTGGGCAAGCCCTTACTCTACGAGAGTGGAACTAGCCCTCAAAGTGAAGGGCATATCCTATGAATATGTGGAAGAAGATTTCAAGAACAAAACCCCAGAGCTGCTCAAGTACAACCCAGTTCACAAGAAGATCCCTGTTCTTGTTCACAATGGAAAACCTGTTGCTGAGTCTCTTGTCATCCTTGAATATATTGAAGAAGTTTGGAAAGATGGTCCTCAACTTCTCCCACATGATCCCCACGAAAAGGCTCAAGTTCGATTCTGGGTCCATTTTATCAACACAAAGTACACTGAAATCATGACGACAGTAATTATAACTGAGGGAGAAGTACAAGAGAAAGCCCTCAGTCAGGTGTATGAACTAATGAAGTTACTTGATGAAGGAATCAAGACCTTTTTCCCAGATGGGAATCCAACTTTTGAGGCTAAGAATTTAGGGCTCCTAGACATTGTAGGAAATTCAATCATAGACCCAGAGAAGACTCCAGTGCTATTCTCTTGGATAACAGCTCTGAGAGAGCAACCTATAGTGATGGAGACAATTGCTCCTCCTGAAAAGCTGGTGTCACTTATTCTTAGGCCTTGGAGACAGGGTTTCATCAATCCTCATCTTTCTCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

219

Amino Acids

25.06

Weight (kDa)

5.68

Isoelectric Point (pI)

34.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	7 - 78	5.2e-21	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 78	5.4e-17	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 78	2.4e-17	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	350
AclWI	GGATC	2 cut(s)	160, 263
AcsI	RAATTY	2 cut(s)	466, 493
AfaI	GTAC	3 cut(s)	146, 323, 366
AfiI	CCNNNNNNNGG	2 cut(s)	280, 385
AgsI	TTSAA	4 cut(s)	118, 221, 230, 498
AluBI	AGCT	3 cut(s)	136, 545, 595
AluI	AGCT	3 cut(s)	136, 545, 595
Alw26I	GTCTC	3 cut(s)	210, 566, 616
AlwI	GGATC	2 cut(s)	160, 263
AoxI	GGCC	1 cut(s)	614
ApeKI	GCWGC	1 cut(s)	136
ApoI	RAATTY	2 cut(s)	466, 493
AspS9I	GGNCC	2 cut(s)	248, 301
AvaII	GGWCC	2 cut(s)	248, 301
BanII	GRGCYC	1 cut(s)	477
BbsI	GAAGAC	1 cut(s)	521
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	3 cut(s)	239, 434, 562
BcoDI	GTCTC	3 cut(s)	210, 566, 616
BfaI	CTAG	2 cut(s)	68, 479
BfmI	CTRYAG	1 cut(s)	561
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
Bme18I	GGWCC	2 cut(s)	248, 301
BmgT120I	GGNCC	2 cut(s)	248, 301
BmiI	GGNNCC	2 cut(s)	302, 476
BmrI	ACTGGG	1 cut(s)	146
BmuI	ACTGGG	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	521
BpmI	CTGGAG	1 cut(s)	504
BpuEI	CTTGAG	2 cut(s)	125, 270
BsaBI	GATNNNNATC	1 cut(s)	444
BsaJI	CCNNGG	1 cut(s)	617
BsaXI	ACNNNNNCTCC	4 cut(s)	565, 595, 613, 643
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 385
Bse1I	ACTGG	2 cut(s)	152, 521
Bse8I	GATNNNNATC	1 cut(s)	444
BseDI	CCNNGG	1 cut(s)	617
BseGI	GGATG	2 cut(s)	39, 213
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	2 cut(s)	280, 385
BseMII	CTCAG	4 cut(s)	192, 345, 394, 539
BseNI	ACTGG	2 cut(s)	152, 521
BseRI	GAGGAG	1 cut(s)	573
BseXI	GCAGC	1 cut(s)	123
BshFI	GGCC	1 cut(s)	616
BslI	CCNNNNNNNGG	2 cut(s)	280, 385
BsmAI	GTCTC	3 cut(s)	210, 566, 616
BsnI	GGCC	1 cut(s)	616
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	2 cut(s)	165, 268
BspANI	GGCC	1 cut(s)	616
BspCNI	CTCAG	4 cut(s)	193, 346, 393, 540
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	302, 476
BspPI	GGATC	2 cut(s)	160, 263
BsrI	ACTGG	2 cut(s)	152, 521
BssECI	CCNNGG	1 cut(s)	617
BssMI	GATC	2 cut(s)	165, 268
BssT1I	CCWWGG	1 cut(s)	617
Bst4CI	ACNGT	2 cut(s)	17, 343
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	6 cut(s)	201, 354, 380, 462, 548, 611
BstENI	CCTNNNNNAGG	1 cut(s)	383
BstF5I	GGATG	2 cut(s)	39, 213
BstKTI	GATC	2 cut(s)	168, 271
BstMAI	GTCTC	3 cut(s)	210, 566, 616
BstMBI	GATC	2 cut(s)	165, 268
BstSFI	CTRYAG	1 cut(s)	561
BstV1I	GCAGC	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	521
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	616
BtsCI	GGATG	2 cut(s)	39, 213
BtsIMutI	CAGTG	3 cut(s)	22, 324, 528
Cac8I	GCNNGC	1 cut(s)	43
CciI	TCATGA	1 cut(s)	333
Cfr13I	GGNCC	2 cut(s)	248, 301
Csp6I	GTAC	3 cut(s)	145, 322, 365
CviAII	CATG	3 cut(s)	29, 266, 334
CviQI	GTAC	3 cut(s)	145, 322, 365
DdeI	CTNAG	6 cut(s)	201, 354, 380, 462, 548, 611
DpnI	GATC	2 cut(s)	167, 270
DpnII	GATC	2 cut(s)	165, 268
Eco130I	CCWWGG	1 cut(s)	617
Eco147I	AGGCCT	1 cut(s)	616
Eco24I	GRGCYC	1 cut(s)	477
Eco47I	GGWCC	2 cut(s)	248, 301
EcoNI	CCTNNNNNAGG	1 cut(s)	383
EcoT14I	CCWWGG	1 cut(s)	617
EcoT38I	GRGCYC	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	617
FaeI	CATG	3 cut(s)	32, 269, 337
FatI	CATG	3 cut(s)	28, 265, 333
Fnu4HI	GCNGC	1 cut(s)	137
FokI	GGATG	2 cut(s)	46, 200
FriOI	GRGCYC	1 cut(s)	477
Fsp4HI	GCNGC	1 cut(s)	137
FspBI	CTAG	2 cut(s)	68, 479
GluI	GCNGC	1 cut(s)	137
GsuI	CTGGAG	1 cut(s)	504
HaeIII	GGCC	1 cut(s)	616
Hin1II	CATG	3 cut(s)	32, 269, 337
HinfI	GANTC	5 cut(s)	203, 294, 420, 445, 517
Hpy166II	GTNNAC	3 cut(s)	157, 181, 324
Hpy188I	TCNGA	1 cut(s)	549
Hpy188III	TCNNGA	4 cut(s)	118, 334, 424, 587
Hpy8I	GTNNAC	3 cut(s)	157, 181, 324
HpyAV	CCTTC	2 cut(s)	76, 410
HpyCH4III	ACNGT	2 cut(s)	17, 343
HpyF3I	CTNAG	6 cut(s)	201, 354, 380, 462, 548, 611
Hsp92II	CATG	3 cut(s)	32, 269, 337
Kzo9I	GATC	2 cut(s)	165, 268
LmnI	GCTCC	2 cut(s)	480, 586
Lsp1109I	GCAGC	1 cut(s)	123
MaeI	CTAG	2 cut(s)	68, 479
MaeIII	GTNAC	2 cut(s)	405, 600
MalI	GATC	2 cut(s)	167, 270
MboI	GATC	2 cut(s)	165, 268
MboII	GAAGA	5 cut(s)	119, 122, 175, 242, 526
MfeI	CAATTG	1 cut(s)	576
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	4 cut(s)	345, 466, 493, 576
MlyI	GAGTC	2 cut(s)	212, 511
MmeI	TCCRAC	1 cut(s)	473
MnlI	CCTC	7 cut(s)	83, 261, 349, 389, 451, 594, 651
MseI	TTAA	1 cut(s)	658
MunI	CAATTG	1 cut(s)	576
NdeII	GATC	2 cut(s)	165, 268
NlaIII	CATG	3 cut(s)	32, 269, 337
NlaIV	GGNNCC	2 cut(s)	302, 476
NmuCI	GTSAC	1 cut(s)	600
PagI	TCATGA	1 cut(s)	333
PceI	AGGCCT	1 cut(s)	616
PfeI	GAWTC	3 cut(s)	294, 420, 445
PkrI	GCNGC	1 cut(s)	138
PleI	GAGTC	2 cut(s)	211, 511
PpsI	GAGTC	2 cut(s)	211, 511
PsiI	TTATAA	1 cut(s)	350
PspN4I	GGNNCC	2 cut(s)	302, 476
PspPI	GGNCC	2 cut(s)	248, 301
PsuI	RGATCY	1 cut(s)	165
RsaI	GTAC	3 cut(s)	146, 323, 366
RsaNI	GTAC	3 cut(s)	145, 322, 365
SaqAI	TTAA	1 cut(s)	658
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	2 cut(s)	165, 268
Sau96I	GGNCC	2 cut(s)	248, 301
SchI	GAGTC	2 cut(s)	212, 511
SduI	GDGCHC	1 cut(s)	477
SetI	ASST	7 cut(s)	138, 196, 390, 431, 547, 562, 597
SfcI	CTRYAG	1 cut(s)	561
SinI	GGWCC	2 cut(s)	248, 301
SmlI	CTYRAG	2 cut(s)	140, 285
SmoI	CTYRAG	2 cut(s)	140, 285
Sse9I	AATT	4 cut(s)	345, 466, 493, 576
SseBI	AGGCCT	1 cut(s)	616
SspMI	CTAG	2 cut(s)	68, 479
StuI	AGGCCT	1 cut(s)	616
StyI	CCWWGG	1 cut(s)	617
TaaI	ACNGT	2 cut(s)	17, 343
TaqI	TCGA	1 cut(s)	292
TasI	AATT	4 cut(s)	345, 466, 493, 576
TatI	WGTACW	3 cut(s)	144, 321, 364
TfiI	GAWTC	3 cut(s)	294, 420, 445
Tru1I	TTAA	1 cut(s)	658
Tru9I	TTAA	1 cut(s)	658
TscAI	CASTG	3 cut(s)	22, 331, 528
TseFI	GTSAC	1 cut(s)	600
TseI	GCWGC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	600
TspDTI	ATGAA	5 cut(s)	111, 408, 416, 429, 622
TspRI	CASTG	3 cut(s)	22, 331, 528
VpaK11BI	GGWCC	2 cut(s)	248, 301
XagI	CCTNNNNNAGG	1 cut(s)	383
XapI	RAATTY	2 cut(s)	466, 493
XspI	CTAG	2 cut(s)	68, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.