Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Reverse (-)

2524819 .. 2525498

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG039500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCAGCAGGTGTTTGAGTCCTTGGTGTTAGTGATCAAAAGCAGTGGAGAAGCACAAGAGAAAGCCATCAAAGAAGTGTCTGAGAAGGTAAAATTACTTGAAGCCGGACTCAAGGGTTTGTTCCCAGATGGCATTCCTTCAGTAGATGAATTCAGCAAAAATGTGACACTACTAGATTTGTTCATTCTCGCACACTTTGGCGAATATGAAGCTCAGGAAGAAGTCCTTGGCCTCAAGCTTATCGACTCCGATAAGACTCCACTGCTAGTTTCCTGCATAACAGCTCTGATTGAGATCCCTGCGGTGAAAAAGTCGCTGATTCCTCATGAAAAGATGGTGGCCTTCCTCAAGTCCTATAGAGAAGATGCCCTCAAGTCTGCTACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

129

Amino Acids

14.17

Weight (kDa)

5.07

Isoelectric Point (pI)

23.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	302
AclWI	GGATC	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	123
AgsI	TTSAA	1 cut(s)	101
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AluBI	AGCT	4 cut(s)	212, 238, 284, 386
AluI	AGCT	4 cut(s)	212, 238, 284, 386
AlwI	GGATC	1 cut(s)	289
AoxI	GGCC	2 cut(s)	229, 339
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	316
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	3 cut(s)	74, 122, 328
BclI	TGATCA	1 cut(s)	33
BfaI	CTAG	2 cut(s)	173, 266
BfmI	CTRYAG	2 cut(s)	355, 381
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	355
Bpu10I	CCTNAGC	1 cut(s)	213
BpuEI	CTTGAG	4 cut(s)	95, 218, 332, 356
BsaBI	GATNNNNATC	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	21, 226
Bse8I	GATNNNNATC	1 cut(s)	293
BseDI	CCNNGG	2 cut(s)	21, 226
BseJI	GATNNNNATC	1 cut(s)	293
BseMII	CTCAG	2 cut(s)	72, 227
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	2 cut(s)	231, 341
BsiSI	CCGG	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	132
BsnI	GGCC	2 cut(s)	231, 341
Bsp143I	GATC	2 cut(s)	33, 294
BspACI	CCGC	1 cut(s)	302
BspANI	GGCC	2 cut(s)	231, 341
BspCNI	CTCAG	2 cut(s)	73, 226
BspHI	TCATGA	1 cut(s)	325
BspPI	GGATC	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	21, 226
BssMI	GATC	2 cut(s)	33, 294
BssT1I	CCWWGG	2 cut(s)	21, 226
BstDEI	CTNAG	2 cut(s)	81, 213
BstKTI	GATC	2 cut(s)	36, 297
BstMBI	GATC	2 cut(s)	33, 294
BstSFI	CTRYAG	2 cut(s)	355, 381
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	231, 341
BtsI	GCAGTG	2 cut(s)	49, 260
BtsIMutI	CAGTG	2 cut(s)	49, 260
CciI	TCATGA	1 cut(s)	325
CspCI	CAANNNNNGTGG	2 cut(s)	25, 60
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	8 cut(s)	65, 104, 212, 231, 238, 284, 341, 386
CviKI_1	RGCY	8 cut(s)	65, 104, 212, 231, 238, 284, 341, 386
DdeI	CTNAG	2 cut(s)	81, 213
DpnI	GATC	2 cut(s)	35, 296
DpnII	GATC	2 cut(s)	33, 294
Eco130I	CCWWGG	2 cut(s)	21, 226
Eco57I	CTGAAG	1 cut(s)	123
EcoRI	GAATTC	1 cut(s)	149
EcoT14I	CCWWGG	2 cut(s)	21, 226
ErhI	CCWWGG	2 cut(s)	21, 226
FaeI	CATG	1 cut(s)	329
FaiI	YATR	4 cut(s)	207, 278, 327, 357
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	1 cut(s)	325
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	2 cut(s)	173, 266
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	231, 341
HapII	CCGG	1 cut(s)	105
Hin1II	CATG	1 cut(s)	329
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	5 cut(s)	17, 108, 245, 256, 319
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	1 cut(s)	316
Hpy188I	TCNGA	3 cut(s)	82, 250, 288
Hpy188III	TCNNGA	2 cut(s)	215, 326
HpyAV	CCTTC	3 cut(s)	79, 147, 352
HpyCH4V	TGCA	2 cut(s)	4, 276
HpyF3I	CTNAG	2 cut(s)	81, 213
Hsp92II	CATG	1 cut(s)	329
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	33, 294
LpnPI	CCDG	5 cut(s)	118, 138, 200, 286, 312
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	2 cut(s)	173, 266
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	2 cut(s)	35, 296
MboI	GATC	2 cut(s)	33, 294
MboII	GAAGA	2 cut(s)	230, 374
MflI	RGATCY	1 cut(s)	294
MluCI	AATT	2 cut(s)	92, 149
MlyI	GAGTC	4 cut(s)	26, 102, 239, 250
MnlI	CCTC	4 cut(s)	242, 333, 356, 380
MspI	CCGG	1 cut(s)	105
Mva1269I	GAATGC	1 cut(s)	132
NdeII	GATC	2 cut(s)	33, 294
NlaIII	CATG	1 cut(s)	329
NmuCI	GTSAC	1 cut(s)	163
PagI	TCATGA	1 cut(s)	325
PctI	GAATGC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	4 cut(s)	25, 102, 239, 250
PpsI	GAGTC	4 cut(s)	25, 102, 239, 250
PsuI	RGATCY	1 cut(s)	294
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	2 cut(s)	33, 294
SchI	GAGTC	4 cut(s)	26, 102, 239, 250
SetI	ASST	6 cut(s)	12, 90, 214, 240, 286, 388
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	2 cut(s)	355, 381
SmlI	CTYRAG	4 cut(s)	110, 233, 347, 371
SmoI	CTYRAG	4 cut(s)	110, 233, 347, 371
Sse9I	AATT	2 cut(s)	92, 149
SsiI	CCGC	1 cut(s)	302
SspMI	CTAG	2 cut(s)	173, 266
StyI	CCWWGG	2 cut(s)	21, 226
TaqI	TCGA	1 cut(s)	243
TasI	AATT	2 cut(s)	92, 149
TfiI	GAWTC	1 cut(s)	319
TscAI	CASTG	2 cut(s)	49, 267
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	4 cut(s)	162, 172, 222, 342
TspRI	CASTG	2 cut(s)	49, 267
XapI	RAATTY	1 cut(s)	149
XspI	CTAG	2 cut(s)	173, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.