Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001147.1

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Forward (+)

119108 .. 119419

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001147.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atggcagaggaaaccagagtgatcctccatggaagcagacttagcccttatgttaagagggtggaaatggccctcaaaatcaaaggcataccctatgagtttgtgcaagaagatttgaagaacatgagtccattgctcctcaagtacaaccctgttcacaaaaagattcctgtacttgtccacaatggaaaacctcttgctgagtctcttgtcatccttgagtatattgatgaaacctggaaaactagccctcaacttctaccagaagagcccgagttcgcttttgggctagctttctgcaccaacaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

103

Amino Acids

11.85

Weight (kDa)

6.83

Isoelectric Point (pI)

55.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	16
AfaI	GTAC	2 cut(s)	146, 174
AgsI	TTSAA	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	236
AluBI	AGCT	1 cut(s)	293
AluI	AGCT	1 cut(s)	293
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	16
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	70
AsuNHI	GCTAGC	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	273
BciT130I	CCWGG	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	2 cut(s)	246, 290
Bme1390I	CCNGG	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	70
BmrFI	CCNGG	1 cut(s)	238
BmtI	GCTAGC	1 cut(s)	293
BplI	GAGNNNNNCTC	2 cut(s)	9, 41
BpuEI	CTTGAG	2 cut(s)	125, 239
BsaJI	CCNNGG	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	1 cut(s)	213
BseMI	GCAATG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	283
BshFI	GGCC	1 cut(s)	71
BsiHKCI	CYCGRG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	71
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	21
Bsp19I	CCATGG	1 cut(s)	28
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	193
BspOI	GCTAGC	1 cut(s)	293
BspPI	GGATC	1 cut(s)	16
BspQI	GCTCTTC	1 cut(s)	261
BsrDI	GCAATG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	2 cut(s)	41, 201
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	213
BstKTI	GATC	1 cut(s)	24
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNI	CCWGG	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	145, 173
CviAII	CATG	2 cut(s)	29, 124
CviJI	RGCY	6 cut(s)	45, 71, 249, 271, 289, 293
CviKI_1	RGCY	6 cut(s)	45, 71, 249, 271, 289, 293
CviQI	GTAC	2 cut(s)	145, 173
DdeI	CTNAG	2 cut(s)	41, 201
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	2 cut(s)	32, 127
FaiI	YATR	6 cut(s)	30, 51, 89, 96, 125, 225
FatI	CATG	2 cut(s)	28, 123
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	273
FspBI	CTAG	2 cut(s)	246, 290
HaeIII	GGCC	1 cut(s)	71
Hin1II	CATG	2 cut(s)	32, 127
HinfI	GANTC	3 cut(s)	127, 166, 203
Hpy166II	GTNNAC	2 cut(s)	157, 181
Hpy8I	GTNNAC	2 cut(s)	157, 181
HpyCH4V	TGCA	2 cut(s)	106, 300
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	2 cut(s)	41, 201
Hsp92II	CATG	2 cut(s)	32, 127
Kzo9I	GATC	1 cut(s)	21
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	141
LpnPI	CCDG	7 cut(s)	28, 165, 183, 223, 250, 276, 292
MaeI	CTAG	2 cut(s)	246, 290
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	3 cut(s)	122, 130, 278
MhlI	GDGCHC	1 cut(s)	273
MlyI	GAGTC	2 cut(s)	136, 212
MnlI	CCTC	6 cut(s)	35, 51, 83, 149, 204, 261
MseI	TTAA	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	238
MwoI	GCNNNNNNNGC	1 cut(s)	42
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	1 cut(s)	21
NheI	GCTAGC	1 cut(s)	289
NlaIII	CATG	2 cut(s)	32, 127
PciSI	GCTCTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	166
PleI	GAGTC	2 cut(s)	135, 211
PpsI	GAGTC	2 cut(s)	135, 211
Psp6I	CCWGG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	236
PspPI	GGNCC	1 cut(s)	70
RsaI	GTAC	2 cut(s)	146, 174
RsaNI	GTAC	2 cut(s)	145, 173
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	21
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	2 cut(s)	136, 212
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	4 cut(s)	196, 239, 295, 311
SmlI	CTYRAG	2 cut(s)	140, 218
SmoI	CTYRAG	2 cut(s)	140, 218
SspMI	CTAG	2 cut(s)	246, 290
StyD4I	CCNGG	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	28
TatI	WGTACW	2 cut(s)	144, 172
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TspDTI	ATGAA	1 cut(s)	246
XspI	CTAG	2 cut(s)	246, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.