Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Forward (+)

8541316 .. 8542417

Gene Structure 1102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCAGAGGAAACCAGAGTGATCCTCCATGGAAACAGACTTAGCCCTTATGTTAAGAGGGTGGAAATGGCCCTCAAAATCAAAGGCATACCCTATGAGTTTGTGGAAGAAGATTTGAAGAACAAGAGTCCATTGCTCCTCAAGTACAACCCTGTTCACAAAAAGATTCCTGTACTTGTCCACAATGGAAAACCCCTTGCTGAGTCTCTTGTCATCCTTGAATATATTGATGAAGCCTGGAAAACTAGCCCTCAACTTCTACCAGAAGATCCATATAGAAGAGCCCGAGTTCACTTTTGGGCTAGCTTTCTGCACCAACAGTTGTTTGAGGCCATTGTCTTAGTGATCAAAACAGACGAAGAAGCACGACAGAAAACGATCAAAGAAATGTTTAACAAACTGAAGTTACTCGAAGACGGAGTGAAGGATTTATTCTCAGATGGCATTCCTTTGGTGGTTGACAACAATATCAATGTAGGTCTACTAGATGTGCTCATGTTTTCTATCTTTGATTCATATGAGGCTCATGAACAAGTCCTTGGAATAAAGGTGATAGACCCTGAGAAGACACCAGTAATATATTCCTGGATTAAATCTATAAATGAGCTACATGTGGTGAAAGAGCTGCATATCCCTCATGAAAAAGTGCTGGCATCTGTCAAGCTTTTTAGAAAATTGTCTATGAATTCTACTGCAGAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

235

Amino Acids

27.01

Weight (kDa)

6.52

Isoelectric Point (pI)

31.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	7 - 78	1.5e-19	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 79	5.6e-18	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	15 - 78	3.6e-17	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	481
AclWI	GGATC	2 cut(s)	16, 263
AcsI	RAATTY	1 cut(s)	685
AcuI	CTGAAG	1 cut(s)	422
AfaI	GTAC	2 cut(s)	146, 174
AflIII	ACRYGT	1 cut(s)	610
AgsI	TTSAA	2 cut(s)	118, 221
AjnI	CCWGG	2 cut(s)	236, 584
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	4 cut(s)	306, 607, 625, 664
AluI	AGCT	4 cut(s)	306, 607, 625, 664
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	2 cut(s)	210, 692
AlwI	GGATC	2 cut(s)	16, 263
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	2 cut(s)	69, 330
ApeKI	GCWGC	1 cut(s)	625
ApoI	RAATTY	1 cut(s)	685
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	2 cut(s)	562, 628
AsuNHI	GCTAGC	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	285
BanII	GRGCYC	1 cut(s)	286
BbsI	GAAGAC	2 cut(s)	420, 572
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	1 cut(s)	612
BccI	CCATC	1 cut(s)	434
BciT130I	CCWGG	2 cut(s)	238, 586
BclI	TGATCA	1 cut(s)	345
BcoDI	GTCTC	2 cut(s)	210, 692
BfaI	CTAG	3 cut(s)	246, 303, 485
BfmI	CTRYAG	1 cut(s)	693
BisI	GCNGC	1 cut(s)	626
BlsI	GCNGC	1 cut(s)	627
Bme1390I	CCNGG	2 cut(s)	238, 586
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	70
BmrFI	CCNGG	2 cut(s)	238, 586
BmsI	GCATC	1 cut(s)	662
BmtI	GCTAGC	1 cut(s)	306
BpiI	GAAGAC	2 cut(s)	420, 572
BplI	GAGNNNNNCTC	2 cut(s)	9, 41
BpuEI	CTTGAG	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	28, 538
Bse1I	ACTGG	1 cut(s)	572
Bse3DI	GCAATG	1 cut(s)	131
BseBI	CCWGG	2 cut(s)	238, 586
BseDI	CCNNGG	2 cut(s)	28, 538
BseGI	GGATG	1 cut(s)	213
BseMI	GCAATG	1 cut(s)	131
BseMII	CTCAG	3 cut(s)	192, 450, 552
BseNI	ACTGG	1 cut(s)	572
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	612
BsgI	GTGCAG	1 cut(s)	296
BshFI	GGCC	2 cut(s)	71, 332
BsiHKAI	GWGCWC	1 cut(s)	495
BsiHKCI	CYCGRG	1 cut(s)	285
BsmAI	GTCTC	2 cut(s)	210, 692
BsmI	GAATGC	1 cut(s)	444
BsnI	GGCC	2 cut(s)	71, 332
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	286, 495
Bsp143I	GATC	4 cut(s)	21, 268, 345, 378
Bsp19I	CCATGG	1 cut(s)	28
BspANI	GGCC	2 cut(s)	71, 332
BspCNI	CTCAG	3 cut(s)	193, 449, 553
BspHI	TCATGA	2 cut(s)	526, 637
BspMAI	CTGCAG	1 cut(s)	697
BspOI	GCTAGC	1 cut(s)	306
BspPI	GGATC	2 cut(s)	16, 263
BspQI	GCTCTTC	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	572
BssECI	CCNNGG	2 cut(s)	28, 538
BssMI	GATC	4 cut(s)	21, 268, 345, 378
BssT1I	CCWWGG	2 cut(s)	28, 538
Bst2UI	CCWGG	2 cut(s)	238, 586
Bst4CI	ACNGT	1 cut(s)	321
Bst6I	CTCTTC	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	304, 651
BstDEI	CTNAG	5 cut(s)	41, 201, 340, 436, 561
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	213
BstKTI	GATC	4 cut(s)	24, 271, 348, 381
BstMAI	GTCTC	2 cut(s)	210, 692
BstMBI	GATC	4 cut(s)	21, 268, 345, 378
BstNI	CCWGG	2 cut(s)	238, 586
BstNSI	RCATGY	1 cut(s)	614
BstSCI	CCNGG	2 cut(s)	236, 584
BstSFI	CTRYAG	1 cut(s)	693
BstV1I	GCAGC	1 cut(s)	612
BstV2I	GAAGAC	2 cut(s)	420, 572
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	71, 332
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	213
Cac8I	GCNNGC	2 cut(s)	304, 651
CciI	TCATGA	2 cut(s)	526, 637
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	145, 173
CviAII	CATG	5 cut(s)	29, 496, 527, 611, 638
CviQI	GTAC	2 cut(s)	145, 173
DdeI	CTNAG	5 cut(s)	41, 201, 340, 436, 561
DpnI	GATC	4 cut(s)	23, 270, 347, 380
DpnII	GATC	4 cut(s)	21, 268, 345, 378
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
Eco130I	CCWWGG	2 cut(s)	28, 538
Eco24I	GRGCYC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	422
Eco88I	CYCGRG	1 cut(s)	285
EcoRI	GAATTC	1 cut(s)	685
EcoRII	CCWGG	2 cut(s)	236, 584
EcoT14I	CCWWGG	2 cut(s)	28, 538
EcoT38I	GRGCYC	1 cut(s)	286
ErhI	CCWWGG	2 cut(s)	28, 538
FaeI	CATG	5 cut(s)	32, 499, 530, 614, 641
FatI	CATG	5 cut(s)	28, 495, 526, 610, 637
FauNDI	CATATG	1 cut(s)	517
FbaI	TGATCA	1 cut(s)	345
FblI	GTMKAC	1 cut(s)	481
Fnu4HI	GCNGC	1 cut(s)	626
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	626
FspBI	CTAG	3 cut(s)	246, 303, 485
GluI	GCNGC	1 cut(s)	626
HaeIII	GGCC	2 cut(s)	71, 332
Hin1II	CATG	5 cut(s)	32, 499, 530, 614, 641
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	4 cut(s)	127, 166, 203, 512
HphI	GGTGA	2 cut(s)	562, 628
Hpy166II	GTNNAC	5 cut(s)	157, 181, 292, 460, 482
Hpy188I	TCNGA	1 cut(s)	439
Hpy188III	TCNNGA	2 cut(s)	527, 638
Hpy8I	GTNNAC	5 cut(s)	157, 181, 292, 460, 482
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	1 cut(s)	321
HpyCH4V	TGCA	3 cut(s)	313, 628, 695
HpyF3I	CTNAG	5 cut(s)	41, 201, 340, 436, 561
Hsp92II	CATG	5 cut(s)	32, 499, 530, 614, 641
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	4 cut(s)	21, 268, 345, 378
LguI	GCTCTTC	1 cut(s)	274
LmnI	GCTCC	1 cut(s)	141
Lsp1109I	GCAGC	1 cut(s)	612
LweI	GCATC	1 cut(s)	662
MaeI	CTAG	3 cut(s)	246, 303, 485
MaeIII	GTNAC	1 cut(s)	405
MalI	GATC	4 cut(s)	23, 270, 347, 380
MboI	GATC	4 cut(s)	21, 268, 345, 378
MboII	GAAGA	8 cut(s)	119, 122, 130, 278, 291, 371, 425, 577
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	2 cut(s)	286, 495
MluCI	AATT	2 cut(s)	674, 685
MlyI	GAGTC	2 cut(s)	136, 212
MnlI	CCTC	8 cut(s)	35, 51, 83, 149, 261, 322, 514, 645
MseI	TTAA	3 cut(s)	54, 393, 591
MspR9I	CCNGG	2 cut(s)	238, 586
Mva1269I	GAATGC	1 cut(s)	444
MvaI	CCWGG	2 cut(s)	238, 586
NcoI	CCATGG	1 cut(s)	28
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	4 cut(s)	21, 268, 345, 378
NheI	GCTAGC	1 cut(s)	302
NlaIII	CATG	5 cut(s)	32, 499, 530, 614, 641
NspI	RCATGY	1 cut(s)	614
PagI	TCATGA	2 cut(s)	526, 637
PciI	ACATGT	1 cut(s)	610
PciSI	GCTCTTC	1 cut(s)	274
PctI	GAATGC	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	166, 512
PfoI	TCCNGGA	1 cut(s)	584
PkrI	GCNGC	1 cut(s)	627
PleI	GAGTC	2 cut(s)	135, 211
PpsI	GAGTC	2 cut(s)	135, 211
PscI	ACATGT	1 cut(s)	610
Psp6I	CCWGG	2 cut(s)	236, 584
PspGI	CCWGG	2 cut(s)	236, 584
PspPI	GGNCC	1 cut(s)	70
PstI	CTGCAG	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	2 cut(s)	146, 174
RsaNI	GTAC	2 cut(s)	145, 173
SapI	GCTCTTC	1 cut(s)	274
SaqAI	TTAA	3 cut(s)	54, 393, 591
SatI	GCNGC	1 cut(s)	626
Sau3AI	GATC	4 cut(s)	21, 268, 345, 378
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	2 cut(s)	136, 212
ScrFI	CCNGG	2 cut(s)	238, 586
SduI	GDGCHC	2 cut(s)	286, 495
SetI	ASST	6 cut(s)	308, 481, 552, 609, 627, 666
SfaNI	GCATC	1 cut(s)	662
SfcI	CTRYAG	1 cut(s)	693
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	2 cut(s)	674, 685
SspMI	CTAG	3 cut(s)	246, 303, 485
StyD4I	CCNGG	2 cut(s)	236, 584
StyI	CCWWGG	2 cut(s)	28, 538
TaaI	ACNGT	1 cut(s)	321
TaqI	TCGA	1 cut(s)	411
TasI	AATT	2 cut(s)	674, 685
TatI	WGTACW	2 cut(s)	144, 172
TfiI	GAWTC	2 cut(s)	166, 512
Tru1I	TTAA	3 cut(s)	54, 393, 591
Tru9I	TTAA	3 cut(s)	54, 393, 591
TseI	GCWGC	1 cut(s)	625
TspDTI	ATGAA	5 cut(s)	246, 504, 543, 654, 698
TspGWI	ACGGA	1 cut(s)	432
XapI	RAATTY	1 cut(s)	685
XceI	RCATGY	1 cut(s)	614
XmiI	GTMKAC	1 cut(s)	481
XspI	CTAG	3 cut(s)	246, 303, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.