Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Reverse (-)

2818095 .. 2836404

Gene Structure 18310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG043100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGCCCTTCACTTTGAGGGCTAGTTCCACCCTCGTAGACAACAATCTGGGGCTTCTGGACATTGTATTGTCACTATTGTGTTCACAGTTTGGCCCTCATAAAGTTCAGGAAGAAGTGCTTGGTATAACAACTATTGACCCAGAGAAAAACCCACTTTTGTTTAGTTGGCTGAAATCTCTGAATGAGTTGCCTTTAGTGAAAGAGTTAACCCCTCATGAAAAGCTAGTAGCAGTTCTTCACTTTTTCAGAAACTATGCCCTCAAATCTAGTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

92

Amino Acids

10.27

Weight (kDa)

6.25

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	36
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
AleI	CACNNNNGTG	1 cut(s)	76
AluBI	AGCT	1 cut(s)	223
AluI	AGCT	1 cut(s)	223
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	92
BarI	GAAGNNNNNNTAC	2 cut(s)	219, 251
BbvI	GCAGC	1 cut(s)	259
BfaI	CTAG	3 cut(s)	21, 224, 267
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	259
BshFI	GGCC	1 cut(s)	93
BsnI	GGCC	1 cut(s)	93
BspANI	GGCC	1 cut(s)	93
BspHI	TCATGA	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	93
CciI	TCATGA	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	92
CviAII	CATG	1 cut(s)	215
CviJI	RGCY	5 cut(s)	20, 52, 93, 169, 223
CviKI_1	RGCY	5 cut(s)	20, 52, 93, 169, 223
FaeI	CATG	1 cut(s)	218
FaiI	YATR	4 cut(s)	99, 125, 216, 255
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FatI	CATG	1 cut(s)	214
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	3 cut(s)	21, 224, 267
GluI	GCNGC	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	93
Hin1II	CATG	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HpaI	GTTAAC	1 cut(s)	207
Hpy166II	GTNNAC	3 cut(s)	37, 83, 207
Hpy188I	TCNGA	2 cut(s)	180, 248
Hpy188III	TCNNGA	3 cut(s)	56, 107, 215
Hpy8I	GTNNAC	3 cut(s)	37, 83, 207
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	218
KspAI	GTTAAC	1 cut(s)	207
LpnPI	CCDG	4 cut(s)	32, 41, 92, 153
Lsp1109I	GCAGC	1 cut(s)	259
MaeI	CTAG	3 cut(s)	21, 224, 267
MaeIII	GTNAC	1 cut(s)	69
MboII	GAAGA	2 cut(s)	122, 227
MnlI	CCTC	5 cut(s)	9, 41, 105, 222, 269
MseI	TTAA	1 cut(s)	206
MslI	CAYNNNNRTG	1 cut(s)	76
NlaIII	CATG	1 cut(s)	218
NmuCI	GTSAC	1 cut(s)	69
OliI	CACNNNNGTG	1 cut(s)	76
PagI	TCATGA	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	1 cut(s)	273
Sau96I	GGNCC	1 cut(s)	92
SetI	ASST	1 cut(s)	225
SgeI	CNNG	9 cut(s)	33, 44, 59, 68, 119, 131, 152, 227, 236
SmiMI	CAYNNNNRTG	1 cut(s)	76
SspMI	CTAG	3 cut(s)	21, 224, 267
TaaI	ACNGT	1 cut(s)	87
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	1 cut(s)	231
XmiI	GTMKAC	1 cut(s)	36
XspI	CTAG	3 cut(s)	21, 224, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.