Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Reverse (-)

8510813 .. 8511997

Gene Structure 1185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAACTCAGTATCCCCAGCAGTGATCAATAGAGAGATGACAGGAAAAGACAGTGTGATAGTACATGGGATGTGGGCAAGCCCTTTCTCTAAGAGGGTTGAACTAGCCCTCAAAGTGAAGGGCATACCCTATGAATATGTGGAAGAAGATTTCAAGAAGAAGACCCCTGAGCTGCTCAAGTACAACCCAGTTCACAAGAAGATCCCTGTTCTTGTTCACAATGGAAAACCTATTGCTGAGTCTCTTGTCATCCTCGAATATATTGAAGAAGCTTTTAAAGATTGTCCTCAACTTCTCCCAAGTGATCCCTATGAAAAGTCTCAAGTTCGATTCTGGGTTGACTTTGTCCACACAAAGTTCAGTGACATCATGATGACAGTAATTAAAACCAAGGGAGAAGAACAAGAGAAAGCCCTGTGTCAGGTGTATGAACTACTGAAGGTTCTTGATGAAGGAATCAAGATCTTTTTCCCAGATGGGAATCCATCTTTTGAGGCCAAGCATTTGGGGTTACTAGACATTGTAGCAAGTTCAGTGCTTTGCCCATTTAGAGCTTCAGAAGAAGTCCTTGGCATAAAGATCATAGACCCAGAAAAGACTCCACTGCTAAACGCTTGGATAACAGCTTTGAGTGAGCTGCCTCAAGTTTTAGAGACACTTCCTGCTCACGGAAAGCTGGTGTCGATTCTTGGGCCCTGGAGACAGAGTTTCATCAATCCTCCAGCTTCTTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

246

Amino Acids

27.55

Weight (kDa)

5.92

Isoelectric Point (pI)

33.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	19 - 90	5.2e-20	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	22 - 93	3.9e-18	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	26 - 90	1e-17	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	196, 299
AcuI	CTGAAG	2 cut(s)	458, 540
AfaI	GTAC	2 cut(s)	63, 182
AfiI	CCNNNNNNNGG	2 cut(s)	421, 668
AgsI	TTSAA	3 cut(s)	101, 154, 266
AjnI	CCWGG	1 cut(s)	695
AjuI	GAANNNNNNNTTGG	2 cut(s)	552, 584
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	7 cut(s)	172, 272, 554, 626, 637, 676, 725
AluI	AGCT	7 cut(s)	172, 272, 554, 626, 637, 676, 725
Alw26I	GTCTC	4 cut(s)	246, 324, 647, 694
AlwI	GGATC	2 cut(s)	196, 299
AoxI	GGCC	2 cut(s)	495, 692
ApaI	GGGCCC	1 cut(s)	696
ApeKI	GCWGC	2 cut(s)	172, 637
AspS9I	GGNCC	2 cut(s)	692, 693
BaeGI	GKGCMC	1 cut(s)	696
BanII	GRGCYC	1 cut(s)	696
BbsI	GAAGAC	1 cut(s)	167
BbvI	GCAGC	2 cut(s)	159, 624
BccI	CCATC	2 cut(s)	470, 493
BciT130I	CCWGG	1 cut(s)	697
BciVI	GTATCC	1 cut(s)	22
BclI	TGATCA	1 cut(s)	24
BcoDI	GTCTC	4 cut(s)	246, 324, 647, 694
BfaI	CTAG	2 cut(s)	104, 515
BfuI	GTATCC	1 cut(s)	22
BglII	AGATCT	1 cut(s)	462
BisI	GCNGC	2 cut(s)	173, 638
BlsI	GCNGC	2 cut(s)	174, 639
Bme1390I	CCNGG	1 cut(s)	697
BmgT120I	GGNCC	2 cut(s)	692, 693
BmiI	GGNNCC	1 cut(s)	694
BmrFI	CCNGG	1 cut(s)	697
BmrI	ACTGGG	1 cut(s)	182
BmuI	ACTGGG	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	167
BpmI	CTGGAG	2 cut(s)	705, 718
Bpu10I	CCTNAGC	1 cut(s)	168
BpuEI	CTTGAG	3 cut(s)	161, 306, 627
BsaBI	GATNNNNATC	1 cut(s)	480
BsaJI	CCNNGG	3 cut(s)	390, 568, 695
BsaXI	ACNNNNNCTCC	2 cut(s)	691, 721
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 668
Bse1I	ACTGG	1 cut(s)	188
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	697
BseDI	CCNNGG	3 cut(s)	390, 568, 695
BseGI	GGATG	2 cut(s)	75, 249
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	2 cut(s)	421, 668
BseMII	CTCAG	3 cut(s)	21, 159, 228
BseNI	ACTGG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	696
BseXI	GCAGC	2 cut(s)	159, 624
BseYI	CCCAGC	1 cut(s)	16
BshFI	GGCC	2 cut(s)	497, 694
BslI	CCNNNNNNNGG	2 cut(s)	421, 668
BsmAI	GTCTC	4 cut(s)	246, 324, 647, 694
BsnI	GGCC	2 cut(s)	497, 694
Bsp120I	GGGCCC	1 cut(s)	692
Bsp1286I	GDGCHC	1 cut(s)	696
Bsp143I	GATC	5 cut(s)	24, 201, 304, 462, 579
BspANI	GGCC	2 cut(s)	497, 694
BspCNI	CTCAG	3 cut(s)	20, 160, 229
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	694
BspPI	GGATC	2 cut(s)	196, 299
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	3 cut(s)	390, 568, 695
BssMI	GATC	5 cut(s)	24, 201, 304, 462, 579
BssT1I	CCWWGG	2 cut(s)	390, 568
Bst2UI	CCWGG	1 cut(s)	697
Bst4CI	ACNGT	2 cut(s)	53, 379
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	4 cut(s)	7, 90, 168, 237
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	2 cut(s)	75, 249
BstKTI	GATC	5 cut(s)	27, 204, 307, 465, 582
BstMAI	GTCTC	4 cut(s)	246, 324, 647, 694
BstMBI	GATC	5 cut(s)	24, 201, 304, 462, 579
BstNI	CCWGG	1 cut(s)	697
BstSCI	CCNGG	1 cut(s)	695
BstSLI	GKGCMC	1 cut(s)	696
BstV1I	GCAGC	2 cut(s)	159, 624
BstV2I	GAAGAC	1 cut(s)	167
BstX2I	RGATCY	2 cut(s)	201, 462
BstXI	CCANNNNNNTGG	1 cut(s)	505
BstYI	RGATCY	2 cut(s)	201, 462
BsuI	GTATCC	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	497, 694
BtsCI	GGATG	2 cut(s)	75, 249
BtsI	GCAGTG	2 cut(s)	27, 602
BtsIMutI	CAGTG	5 cut(s)	27, 58, 367, 540, 602
Cac8I	GCNNGC	1 cut(s)	79
CciI	TCATGA	1 cut(s)	369
Cfr13I	GGNCC	2 cut(s)	692, 693
Csp6I	GTAC	2 cut(s)	62, 181
CviAII	CATG	2 cut(s)	65, 370
CviQI	GTAC	2 cut(s)	62, 181
DdeI	CTNAG	4 cut(s)	7, 90, 168, 237
DpnI	GATC	5 cut(s)	26, 203, 306, 464, 581
DpnII	GATC	5 cut(s)	24, 201, 304, 462, 579
DraI	TTTAAA	1 cut(s)	277
Eco130I	CCWWGG	2 cut(s)	390, 568
Eco24I	GRGCYC	1 cut(s)	696
Eco57I	CTGAAG	2 cut(s)	458, 540
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoO109I	RGGNCCY	1 cut(s)	693
EcoRII	CCWGG	1 cut(s)	695
EcoT14I	CCWWGG	2 cut(s)	390, 568
EcoT38I	GRGCYC	1 cut(s)	696
ErhI	CCWWGG	2 cut(s)	390, 568
FaeI	CATG	2 cut(s)	68, 373
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FatI	CATG	2 cut(s)	64, 369
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	173, 638
FokI	GGATG	2 cut(s)	82, 236
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	2 cut(s)	173, 638
FspBI	CTAG	2 cut(s)	104, 515
GluI	GCNGC	2 cut(s)	173, 638
GsaI	CCCAGC	1 cut(s)	20
GsuI	CTGGAG	2 cut(s)	705, 718
HaeIII	GGCC	2 cut(s)	497, 694
Hin1II	CATG	2 cut(s)	68, 373
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	6 cut(s)	239, 330, 456, 481, 598, 685
Hpy166II	GTNNAC	4 cut(s)	193, 217, 340, 349
Hpy188I	TCNGA	1 cut(s)	559
Hpy188III	TCNNGA	4 cut(s)	154, 370, 446, 460
Hpy8I	GTNNAC	4 cut(s)	193, 217, 340, 349
HpyAV	CCTTC	3 cut(s)	112, 433, 446
HpyCH4III	ACNGT	2 cut(s)	53, 379
HpyF3I	CTNAG	4 cut(s)	7, 90, 168, 237
Hsp92II	CATG	2 cut(s)	68, 373
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	5 cut(s)	24, 201, 304, 462, 579
Lsp1109I	GCAGC	2 cut(s)	159, 624
MaeI	CTAG	2 cut(s)	104, 515
MaeIII	GTNAC	2 cut(s)	362, 510
MalI	GATC	5 cut(s)	26, 203, 306, 464, 581
MboI	GATC	5 cut(s)	24, 201, 304, 462, 579
MboII	GAAGA	9 cut(s)	155, 158, 169, 172, 211, 278, 410, 572, 720
MflI	RGATCY	2 cut(s)	201, 462
MhlI	GDGCHC	1 cut(s)	696
MluCI	AATT	1 cut(s)	381
MlyI	GAGTC	2 cut(s)	248, 592
MnlI	CCTC	7 cut(s)	87, 119, 263, 297, 487, 651, 729
MseI	TTAA	3 cut(s)	276, 384, 736
MslI	CAYNNNNRTG	1 cut(s)	371
MspR9I	CCNGG	1 cut(s)	697
MvaI	CCWGG	1 cut(s)	697
NdeII	GATC	5 cut(s)	24, 201, 304, 462, 579
NlaIII	CATG	2 cut(s)	68, 373
NlaIV	GGNNCC	1 cut(s)	694
NmuCI	GTSAC	1 cut(s)	362
PagI	TCATGA	1 cut(s)	369
PfeI	GAWTC	4 cut(s)	330, 456, 481, 685
PflFI	GACNNNGTC	1 cut(s)	344
PkrI	GCNGC	2 cut(s)	174, 639
PleI	GAGTC	2 cut(s)	247, 592
PpsI	GAGTC	2 cut(s)	247, 592
Psp6I	CCWGG	1 cut(s)	695
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	695
PspN4I	GGNNCC	1 cut(s)	694
PspOMI	GGGCCC	1 cut(s)	692
PspPI	GGNCC	2 cut(s)	692, 693
PsuI	RGATCY	2 cut(s)	201, 462
PsyI	GACNNNGTC	1 cut(s)	344
RsaI	GTAC	2 cut(s)	63, 182
RsaNI	GTAC	2 cut(s)	62, 181
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	3 cut(s)	276, 384, 736
SatI	GCNGC	2 cut(s)	173, 638
Sau3AI	GATC	5 cut(s)	24, 201, 304, 462, 579
Sau96I	GGNCC	2 cut(s)	692, 693
SchI	GAGTC	2 cut(s)	248, 592
ScrFI	CCNGG	1 cut(s)	697
SduI	GDGCHC	1 cut(s)	696
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	3 cut(s)	176, 321, 642
SmoI	CTYRAG	3 cut(s)	176, 321, 642
Sse9I	AATT	1 cut(s)	381
SspMI	CTAG	2 cut(s)	104, 515
StyD4I	CCNGG	1 cut(s)	695
StyI	CCWWGG	2 cut(s)	390, 568
TaaI	ACNGT	2 cut(s)	53, 379
TaqI	TCGA	3 cut(s)	255, 328, 683
TasI	AATT	1 cut(s)	381
TatI	WGTACW	2 cut(s)	61, 180
TfiI	GAWTC	4 cut(s)	330, 456, 481, 685
Tru1I	TTAA	3 cut(s)	276, 384, 736
Tru9I	TTAA	3 cut(s)	276, 384, 736
TscAI	CASTG	5 cut(s)	27, 58, 367, 540, 609
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	2 cut(s)	172, 637
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	7 cut(s)	17, 147, 327, 444, 465, 700, 720
TspGWI	ACGGA	1 cut(s)	684
TspRI	CASTG	5 cut(s)	27, 58, 367, 540, 609
Tth111I	GACNNNGTC	1 cut(s)	344
XagI	CCTNNNNNAGG	1 cut(s)	419
XspI	CTAG	2 cut(s)	104, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.