Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Forward (+)

2816198 .. 2817289

Gene Structure 1092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG043000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCAGGGAAAGAGAGTGTGATAGTACATGGGATGTGGGCAAGCCCTTACTCTAAGAGGGTTGAACTAGCCCTCAAAGTGAAGGAAAATAAGAAAATGCTATGTGTTCTGTTCACTGACATCATGATGACAATAATTAAAACTAAGGGAGAAGTACAAGAGAAAGCCCTGAGTCAGGTGCATGAACTAATTAAGGTGCTTGATGAAGGAATCAAGATCTTTTTCCCAGATGGGAATCCAACTTTTGAGGTTAAGAATTTGGGGCTCCTAGACATTATAGCAAGTACAGTGTTTTGCTCATTTTCAGCTACAGAAGAAGTGATTGGTGCAAAGATCATAGACCCAGAGAAGACTCCATTGCTATACTCCTGGGTGAAAGCTCTGGGCGAGCACCCTCTAGTGATGGACATAATTGTTCCTCATGAAAAGCTGGTGTCAATTCTTGGGCCTTGGAGACAGAGTTTCATCAATCCTCCTCCTTCTCAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

163

Amino Acids

18.2

Weight (kDa)

6.42

Isoelectric Point (pI)

24.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	256
AfaI	GTAC	3 cut(s)	27, 156, 286
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	1 cut(s)	65
AjnI	CCWGG	1 cut(s)	368
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
AluBI	AGCT	3 cut(s)	308, 380, 430
AluI	AGCT	3 cut(s)	308, 380, 430
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	1 cut(s)	448
AoxI	GGCC	1 cut(s)	446
ApoI	RAATTY	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	446
AsuHPI	GGTGA	1 cut(s)	385
BanII	GRGCYC	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	393
BccI	CCATC	2 cut(s)	224, 397
BciT130I	CCWGG	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	448
BfaI	CTAG	3 cut(s)	68, 269, 398
BfmI	CTRYAG	1 cut(s)	309
BglII	AGATCT	1 cut(s)	216
Bme1390I	CCNGG	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	1 cut(s)	370
BpiI	GAAGAC	1 cut(s)	356
BsaBI	GATNNNNATC	1 cut(s)	234
BsaJI	CCNNGG	2 cut(s)	369, 449
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	356
Bse8I	GATNNNNATC	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	2 cut(s)	369, 449
BseGI	GGATG	1 cut(s)	39
BseJI	GATNNNNATC	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	465
BshFI	GGCC	1 cut(s)	448
BsiHKAI	GWGCWC	1 cut(s)	393
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	448
BsnI	GGCC	1 cut(s)	448
Bsp1286I	GDGCHC	2 cut(s)	267, 393
Bsp143I	GATC	2 cut(s)	216, 333
BspANI	GGCC	1 cut(s)	448
BspCNI	CTCAG	1 cut(s)	162
BspHI	TCATGA	2 cut(s)	123, 421
BspLI	GGNNCC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	369, 449
BssMI	GATC	2 cut(s)	216, 333
BssT1I	CCWWGG	1 cut(s)	449
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	289
BstC8I	GCNNGC	2 cut(s)	43, 389
BstDEI	CTNAG	3 cut(s)	54, 144, 170
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	39
BstKTI	GATC	2 cut(s)	219, 336
BstMAI	GTCTC	1 cut(s)	448
BstMBI	GATC	2 cut(s)	216, 333
BstNI	CCWGG	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	309
BstV2I	GAAGAC	1 cut(s)	356
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	448
BtsCI	GGATG	1 cut(s)	39
BtsIMutI	CAGTG	2 cut(s)	114, 294
Cac8I	GCNNGC	2 cut(s)	43, 389
CciI	TCATGA	2 cut(s)	123, 421
Cfr13I	GGNCC	1 cut(s)	446
Csp6I	GTAC	3 cut(s)	26, 155, 285
CviAII	CATG	4 cut(s)	29, 124, 182, 422
CviJI	RGCY	8 cut(s)	45, 71, 167, 265, 308, 380, 430, 448
CviKI_1	RGCY	8 cut(s)	45, 71, 167, 265, 308, 380, 430, 448
CviQI	GTAC	3 cut(s)	26, 155, 285
DdeI	CTNAG	3 cut(s)	54, 144, 170
DpnI	GATC	2 cut(s)	218, 335
DpnII	GATC	2 cut(s)	216, 333
Eco130I	CCWWGG	1 cut(s)	449
Eco24I	GRGCYC	1 cut(s)	267
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	449
FaeI	CATG	4 cut(s)	32, 127, 185, 425
FaiI	YATR	9 cut(s)	30, 103, 125, 183, 278, 338, 364, 410, 423
FatI	CATG	4 cut(s)	28, 123, 181, 421
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	1 cut(s)	267
FspBI	CTAG	3 cut(s)	68, 269, 398
HaeIII	GGCC	1 cut(s)	448
Hin1II	CATG	4 cut(s)	32, 127, 185, 425
HinfI	GANTC	4 cut(s)	172, 210, 235, 352
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188III	TCNNGA	3 cut(s)	124, 214, 422
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	3 cut(s)	76, 200, 489
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	2 cut(s)	181, 329
HpyF3I	CTNAG	3 cut(s)	54, 144, 170
Hsp92II	CATG	4 cut(s)	32, 127, 185, 425
Kzo9I	GATC	2 cut(s)	216, 333
LmnI	GCTCC	1 cut(s)	270
LpnPI	CCDG	8 cut(s)	161, 182, 240, 355, 357, 368, 382, 416
MaeI	CTAG	3 cut(s)	68, 269, 398
MalI	GATC	2 cut(s)	218, 335
MboI	GATC	2 cut(s)	216, 333
MboII	GAAGA	2 cut(s)	326, 361
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	2 cut(s)	267, 393
MluCI	AATT	5 cut(s)	135, 189, 256, 411, 438
MlyI	GAGTC	2 cut(s)	181, 346
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	7 cut(s)	51, 83, 241, 405, 429, 483, 486
MseI	TTAA	4 cut(s)	138, 192, 252, 490
MslI	CAYNNNNRTG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	370
NdeII	GATC	2 cut(s)	216, 333
NlaIII	CATG	4 cut(s)	32, 127, 185, 425
NlaIV	GGNNCC	1 cut(s)	266
PagI	TCATGA	2 cut(s)	123, 421
PfeI	GAWTC	2 cut(s)	210, 235
PleI	GAGTC	2 cut(s)	180, 346
PpsI	GAGTC	2 cut(s)	180, 346
Psp6I	CCWGG	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	216
RsaI	GTAC	3 cut(s)	27, 156, 286
RsaNI	GTAC	3 cut(s)	26, 155, 285
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	4 cut(s)	138, 192, 252, 490
Sau3AI	GATC	2 cut(s)	216, 333
Sau96I	GGNCC	1 cut(s)	446
SchI	GAGTC	2 cut(s)	181, 346
ScrFI	CCNGG	1 cut(s)	370
SduI	GDGCHC	2 cut(s)	267, 393
SetI	ASST	6 cut(s)	180, 198, 252, 310, 382, 432
SfcI	CTRYAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	5 cut(s)	135, 189, 256, 411, 438
SspMI	CTAG	3 cut(s)	68, 269, 398
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	1 cut(s)	449
TaaI	ACNGT	1 cut(s)	289
TasI	AATT	5 cut(s)	135, 189, 256, 411, 438
TatI	WGTACW	3 cut(s)	25, 154, 284
TfiI	GAWTC	2 cut(s)	210, 235
Tru1I	TTAA	4 cut(s)	138, 192, 252, 490
Tru9I	TTAA	4 cut(s)	138, 192, 252, 490
TscAI	CASTG	2 cut(s)	121, 294
TspDTI	ATGAA	4 cut(s)	198, 219, 438, 454
TspRI	CASTG	2 cut(s)	121, 294
XagI	CCTNNNNNAGG	1 cut(s)	173
XapI	RAATTY	1 cut(s)	256
XspI	CTAG	3 cut(s)	68, 269, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.