Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Reverse (-)

64362806 .. 64363748

Gene Structure 943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGAAAACCTGTTGCTGAGTCTCTTGTCATCCTTCAATATATTGAAGAAGTTTGGAAAGATGGCCCTCAACTTCTTCCACATGATCCCCACGAAAAGGCTCAAGTTCGATTCTGGGTCCATTTTATCAACATGCACAAAGTACACAGAAATCATGACGACAGTAATTACAACTGAGGGAGAAGTACAAGAGAAAGCCCTCAGTCAGGTGTATGAACTAATGAAGTTACTTGATGAAGGAATCAAGACCTTTTTCCCAGATGGGAATCCAACTTTTGAGGCTAAGAATTTAGGGCTCCTAGACATTGTAGGAAGTTCAGTGTTTTGTGCATTTTCAGCTGTAGAAGAATTGATTGGTGTAAAGATCATAGACCCAGAGAAGACTCCAGTGCTATTCTCTTGGATAACAGCTCTGAGAGAGCAACCTATAGTGATGGAGACAATTACTCCTCCTGAAAAGCTGGTGTCACTTATTCTTAGGCCTTGGAGACAGGGATTCATCAATCCTCATCTTTCTCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

174

Amino Acids

19.59

Weight (kDa)

5.74

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	286
AfaI	GTAC	2 cut(s)	143, 186
AfiI	CCNNNNNNNGG	2 cut(s)	96, 205
AgsI	TTSAA	2 cut(s)	37, 46
AjuI	GAANNNNNNNTTGG	2 cut(s)	336, 368
AluBI	AGCT	3 cut(s)	338, 410, 460
AluI	AGCT	3 cut(s)	338, 410, 460
Alw26I	GTCTC	3 cut(s)	26, 431, 481
AlwI	GGATC	1 cut(s)	79
AoxI	GGCC	2 cut(s)	63, 479
ApoI	RAATTY	1 cut(s)	286
AspS9I	GGNCC	2 cut(s)	64, 117
AvaII	GGWCC	1 cut(s)	117
BanII	GRGCYC	1 cut(s)	297
BbsI	GAAGAC	1 cut(s)	386
BccI	CCATC	3 cut(s)	55, 254, 427
BcoDI	GTCTC	3 cut(s)	26, 431, 481
BfaI	CTAG	1 cut(s)	299
BfmI	CTRYAG	2 cut(s)	339, 426
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	2 cut(s)	64, 117
BmiI	GGNNCC	2 cut(s)	118, 296
BpiI	GAAGAC	1 cut(s)	386
BpmI	CTGGAG	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	86
BsaBI	GATNNNNATC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	482
BsaXI	ACNNNNNCTCC	2 cut(s)	430, 460
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 205
Bse1I	ACTGG	1 cut(s)	386
Bse8I	GATNNNNATC	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	482
BseGI	GGATG	1 cut(s)	29
BseJI	GATNNNNATC	1 cut(s)	264
BseLI	CCNNNNNNNGG	2 cut(s)	96, 205
BseMII	CTCAG	4 cut(s)	8, 165, 214, 404
BseNI	ACTGG	1 cut(s)	386
BseRI	GAGGAG	1 cut(s)	438
BshFI	GGCC	2 cut(s)	65, 481
BslI	CCNNNNNNNGG	2 cut(s)	96, 205
BsmAI	GTCTC	3 cut(s)	26, 431, 481
BsnI	GGCC	2 cut(s)	65, 481
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	84, 363
BspANI	GGCC	2 cut(s)	65, 481
BspCNI	CTCAG	4 cut(s)	9, 166, 213, 405
BspHI	TCATGA	1 cut(s)	153
BspLI	GGNNCC	2 cut(s)	118, 296
BspPI	GGATC	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	386
BssECI	CCNNGG	1 cut(s)	482
BssMI	GATC	2 cut(s)	84, 363
BssT1I	CCWWGG	1 cut(s)	482
Bst4CI	ACNGT	1 cut(s)	163
BstDEI	CTNAG	6 cut(s)	17, 174, 200, 282, 413, 476
BstENI	CCTNNNNNAGG	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	29
BstKTI	GATC	2 cut(s)	87, 366
BstMAI	GTCTC	3 cut(s)	26, 431, 481
BstMBI	GATC	2 cut(s)	84, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNSI	RCATGY	1 cut(s)	135
BstSFI	CTRYAG	2 cut(s)	339, 426
BstV2I	GAAGAC	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	65, 481
BtsCI	GGATG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	324, 393
CciI	TCATGA	1 cut(s)	153
Cfr13I	GGNCC	2 cut(s)	64, 117
Csp6I	GTAC	2 cut(s)	142, 185
CviAII	CATG	3 cut(s)	82, 132, 154
CviJI	RGCY	9 cut(s)	65, 100, 197, 281, 295, 338, 410, 460, 481
CviKI_1	RGCY	9 cut(s)	65, 100, 197, 281, 295, 338, 410, 460, 481
CviQI	GTAC	2 cut(s)	142, 185
DdeI	CTNAG	6 cut(s)	17, 174, 200, 282, 413, 476
DpnI	GATC	2 cut(s)	86, 365
DpnII	GATC	2 cut(s)	84, 363
Eco130I	CCWWGG	1 cut(s)	482
Eco147I	AGGCCT	1 cut(s)	481
Eco24I	GRGCYC	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	482
EcoT38I	GRGCYC	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	482
FaeI	CATG	3 cut(s)	85, 135, 157
FaiI	YATR	7 cut(s)	41, 83, 133, 155, 213, 368, 428
FatI	CATG	3 cut(s)	81, 131, 153
FokI	GGATG	1 cut(s)	16
FriOI	GRGCYC	1 cut(s)	297
FspBI	CTAG	1 cut(s)	299
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	2 cut(s)	65, 481
Hin1II	CATG	3 cut(s)	85, 135, 157
HinfI	GANTC	6 cut(s)	19, 110, 240, 265, 382, 495
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	1 cut(s)	414
Hpy188III	TCNNGA	3 cut(s)	154, 244, 452
Hpy8I	GTNNAC	1 cut(s)	144
HpyAV	CCTTC	2 cut(s)	43, 230
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	2 cut(s)	135, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	6 cut(s)	17, 174, 200, 282, 413, 476
Hsp92II	CATG	3 cut(s)	85, 135, 157
Kzo9I	GATC	2 cut(s)	84, 363
LmnI	GCTCC	1 cut(s)	300
LpnPI	CCDG	9 cut(s)	23, 99, 191, 270, 387, 399, 446, 465, 476
MaeI	CTAG	1 cut(s)	299
MaeIII	GTNAC	2 cut(s)	225, 465
MalI	GATC	2 cut(s)	86, 365
MboI	GATC	2 cut(s)	84, 363
MboII	GAAGA	4 cut(s)	58, 67, 356, 391
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	4 cut(s)	165, 286, 347, 441
MlyI	GAGTC	2 cut(s)	28, 376
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	6 cut(s)	77, 169, 209, 271, 459, 516
MseI	TTAA	1 cut(s)	523
MspA1I	CMGCKG	1 cut(s)	338
MwoI	GCNNNNNNNGC	1 cut(s)	335
NdeII	GATC	2 cut(s)	84, 363
NlaIII	CATG	3 cut(s)	85, 135, 157
NlaIV	GGNNCC	2 cut(s)	118, 296
NmuCI	GTSAC	1 cut(s)	465
NspI	RCATGY	1 cut(s)	135
PagI	TCATGA	1 cut(s)	153
PceI	AGGCCT	1 cut(s)	481
PfeI	GAWTC	4 cut(s)	110, 240, 265, 495
PleI	GAGTC	2 cut(s)	27, 376
PpsI	GAGTC	2 cut(s)	27, 376
PspN4I	GGNNCC	2 cut(s)	118, 296
PspPI	GGNCC	2 cut(s)	64, 117
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	2 cut(s)	143, 186
RsaNI	GTAC	2 cut(s)	142, 185
SaqAI	TTAA	1 cut(s)	523
Sau3AI	GATC	2 cut(s)	84, 363
Sau96I	GGNCC	2 cut(s)	64, 117
SchI	GAGTC	2 cut(s)	28, 376
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	7 cut(s)	12, 210, 251, 340, 412, 427, 462
SfcI	CTRYAG	2 cut(s)	339, 426
SinI	GGWCC	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	4 cut(s)	165, 286, 347, 441
SseBI	AGGCCT	1 cut(s)	481
SspMI	CTAG	1 cut(s)	299
StuI	AGGCCT	1 cut(s)	481
StyI	CCWWGG	1 cut(s)	482
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	108
TasI	AATT	4 cut(s)	165, 286, 347, 441
TatI	WGTACW	2 cut(s)	141, 184
TfiI	GAWTC	4 cut(s)	110, 240, 265, 495
Tru1I	TTAA	1 cut(s)	523
Tru9I	TTAA	1 cut(s)	523
TscAI	CASTG	2 cut(s)	324, 393
TseFI	GTSAC	1 cut(s)	465
Tsp45I	GTSAC	1 cut(s)	465
TspDTI	ATGAA	4 cut(s)	228, 236, 249, 487
TspRI	CASTG	2 cut(s)	324, 393
VpaK11BI	GGWCC	1 cut(s)	117
XagI	CCTNNNNNAGG	1 cut(s)	203
XapI	RAATTY	1 cut(s)	286
XceI	RCATGY	1 cut(s)	135
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.