Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Forward (+)

8547305 .. 8548971

Gene Structure 1667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15121.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCAGAGCAAAACAAGGTGATCCTATACGGAACGTGGACTAGCCCCTATGTTAAGAGGGTGGAATTGGTCCTCAAAGTGAAGGGTATACCCTATGAGTATGTGGAAGAAGATCTGAGGAACAAAAGTCCAATGCTCCTCAAGTTGAATCCTATTCATAAGAAGGTTCCTGTGCTTGTCCACAATGGGAAAGCCATTACTGAGTCTCTTGTGATCATTGAATATATTGATGAAACCTGGAAAACTGGCCCTCGACTTCTACCACAAGATCCATACAAACGATCCCAAATTCGCTTCTGGGCTAGCTATGTACAGCAGGTGTCTGAGCCCATGGTAATGGTGCTCAAAACCATTGGAGAAGCACAAGAGAAAGCCATCAAGGAAGTGTCTGAGAAGGTAAAAGTACTTGAAGCTGGGCTCAAGGGTCTGTTCCCAGATGGCATTCCTTCAGTAGATGAGTACAGCAAAAATGTTACACTACTAGATTTGGTTATTCTCGCAGACTTGGGCGGCGGATATGAAGTTCAGGAAGAAGTCTTTGGCGTAAAGATTATCGACTCTGAGAAGACTCCACTCATTGTATCCTGCATAACAGCTTTGATTGAGCTCCCTGCGGTGAAAGAGTCGCAGATGCCTCGTGAAAAGGTTGTGGCCTTCCTCAAGTTCTTTAGAGAAAATGCCCTCAATTCTGCTTCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

234

Amino Acids

26.24

Weight (kDa)

6.23

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	6 - 78	9.9e-21	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 79	9.6e-20	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 79	7.9e-17	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	307
Acc36I	ACCTGC	1 cut(s)	307
AccI	GTMKAC	1 cut(s)	88
AciI	CCGC	3 cut(s)	510, 513, 614
AclWI	GGATC	3 cut(s)	16, 263, 276
AcsI	RAATTY	1 cut(s)	288
AcuI	CTGAAG	2 cut(s)	432, 678
AfaI	GTAC	3 cut(s)	312, 405, 461
AgsI	TTSAA	3 cut(s)	148, 221, 410
AjnI	CCWGG	1 cut(s)	236
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AloI	GAACNNNNNNTCC	2 cut(s)	507, 539
AluBI	AGCT	5 cut(s)	306, 413, 596, 607, 698
AluI	AGCT	5 cut(s)	306, 413, 596, 607, 698
Alw21I	GWGCWC	2 cut(s)	345, 609
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	3 cut(s)	16, 263, 276
AoxI	GGCC	2 cut(s)	247, 651
ApoI	RAATTY	1 cut(s)	288
AspS9I	GGNCC	2 cut(s)	70, 248
AsuHPI	GGTGA	2 cut(s)	31, 628
AsuNHI	GCTAGC	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	70
BanII	GRGCYC	3 cut(s)	330, 420, 609
BauI	CACGAG	1 cut(s)	636
BbsI	GAAGAC	1 cut(s)	572
Bbv12I	GWGCWC	2 cut(s)	345, 609
BccI	CCATC	2 cut(s)	383, 431
BcgI	CGANNNNNNTGC	2 cut(s)	617, 651
BciT130I	CCWGG	1 cut(s)	238
BciVI	GTATCC	1 cut(s)	592
BclI	TGATCA	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	3 cut(s)	42, 303, 482
BfuAI	ACCTGC	1 cut(s)	307
BfuI	GTATCC	1 cut(s)	592
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	1 cut(s)	511
BlsI	GCNGC	1 cut(s)	512
BmcAI	AGTACT	1 cut(s)	405
Bme1390I	CCNGG	1 cut(s)	238
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	70, 248
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	238
BmsI	GCATC	1 cut(s)	621
BmtI	GCTAGC	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	572
BpuEI	CTTGAG	3 cut(s)	125, 404, 644
BsaJI	CCNNGG	1 cut(s)	330
Bse1I	ACTGG	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	330
BseMII	CTCAG	5 cut(s)	107, 192, 315, 381, 552
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	1 cut(s)	128
BseYI	CCCAGC	1 cut(s)	413
BshFI	GGCC	2 cut(s)	249, 653
BsiHKAI	GWGCWC	2 cut(s)	345, 609
BsmAI	GTCTC	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	441
BsnI	GGCC	2 cut(s)	249, 653
Bsp1286I	GDGCHC	4 cut(s)	330, 345, 420, 609
Bsp1407I	TGTACA	1 cut(s)	310
Bsp143I	GATC	5 cut(s)	21, 112, 213, 268, 281
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	3 cut(s)	510, 513, 614
BspANI	GGCC	2 cut(s)	249, 653
BspCNI	CTCAG	5 cut(s)	108, 193, 316, 382, 553
BspLI	GGNNCC	1 cut(s)	168
BspMI	ACCTGC	1 cut(s)	307
BspOI	GCTAGC	1 cut(s)	306
BspPI	GGATC	3 cut(s)	16, 263, 276
BsrGI	TGTACA	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	5 cut(s)	21, 112, 213, 268, 281
BssNAI	GTATAC	1 cut(s)	89
BssSI	CACGAG	1 cut(s)	636
BssT1I	CCWWGG	1 cut(s)	330
Bst1107I	GTATAC	1 cut(s)	89
Bst2BI	CACGAG	1 cut(s)	636
Bst2UI	CCWGG	1 cut(s)	238
BstAUI	TGTACA	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	5 cut(s)	116, 201, 324, 390, 561
BstDSI	CCRYGG	1 cut(s)	330
BstKTI	GATC	5 cut(s)	24, 115, 216, 271, 284
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	5 cut(s)	21, 112, 213, 268, 281
BstNI	CCWGG	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	236
BstV2I	GAAGAC	1 cut(s)	572
BstX2I	RGATCY	2 cut(s)	112, 268
BstXI	CCANNNNNNTGG	1 cut(s)	337
BstYI	RGATCY	2 cut(s)	112, 268
BstZ17I	GTATAC	1 cut(s)	89
BsuI	GTATCC	1 cut(s)	592
BsuRI	GGCC	2 cut(s)	249, 653
BtgI	CCRYGG	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	304
Cfr13I	GGNCC	2 cut(s)	70, 248
Csp6I	GTAC	3 cut(s)	311, 404, 460
CviAII	CATG	1 cut(s)	331
CviQI	GTAC	3 cut(s)	311, 404, 460
DdeI	CTNAG	5 cut(s)	116, 201, 324, 390, 561
DpnI	GATC	5 cut(s)	23, 114, 215, 270, 283
DpnII	GATC	5 cut(s)	21, 112, 213, 268, 281
EciI	GGCGGA	1 cut(s)	528
Ecl136II	GAGCTC	1 cut(s)	607
Eco130I	CCWWGG	1 cut(s)	330
Eco24I	GRGCYC	3 cut(s)	330, 420, 609
Eco47I	GGWCC	1 cut(s)	70
Eco53kI	GAGCTC	1 cut(s)	607
Eco57I	CTGAAG	2 cut(s)	432, 678
EcoICRI	GAGCTC	1 cut(s)	607
EcoRII	CCWGG	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	330
EcoT38I	GRGCYC	3 cut(s)	330, 420, 609
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	1 cut(s)	334
FatI	CATG	1 cut(s)	330
FbaI	TGATCA	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	511
FriOI	GRGCYC	3 cut(s)	330, 420, 609
Fsp4HI	GCNGC	1 cut(s)	511
FspBI	CTAG	3 cut(s)	42, 303, 482
GluI	GCNGC	1 cut(s)	511
GsaI	CCCAGC	1 cut(s)	417
HaeIII	GGCC	2 cut(s)	249, 653
Hin1II	CATG	1 cut(s)	334
HinfI	GANTC	5 cut(s)	148, 203, 557, 568, 623
HphI	GGTGA	2 cut(s)	31, 628
Hpy166II	GTNNAC	3 cut(s)	39, 89, 181
Hpy188I	TCNGA	4 cut(s)	117, 325, 391, 562
Hpy188III	TCNNGA	2 cut(s)	527, 638
Hpy8I	GTNNAC	3 cut(s)	39, 89, 181
HpyAV	CCTTC	5 cut(s)	76, 157, 388, 456, 664
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	1 cut(s)	588
HpyF3I	CTNAG	5 cut(s)	116, 201, 324, 390, 561
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	334
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	5 cut(s)	21, 112, 213, 268, 281
LmnI	GCTCC	2 cut(s)	141, 612
LweI	GCATC	1 cut(s)	621
MaeI	CTAG	3 cut(s)	42, 303, 482
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	472
MalI	GATC	5 cut(s)	23, 114, 215, 270, 283
MboI	GATC	5 cut(s)	21, 112, 213, 268, 281
MboII	GAAGA	4 cut(s)	119, 122, 542, 577
MflI	RGATCY	2 cut(s)	112, 268
MhlI	GDGCHC	4 cut(s)	330, 345, 420, 609
MluCI	AATT	3 cut(s)	65, 288, 685
MlyI	GAGTC	4 cut(s)	212, 551, 562, 632
MnlI	CCTC	8 cut(s)	51, 83, 111, 149, 261, 645, 668, 692
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	238
Mva1269I	GAATGC	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	238
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	5 cut(s)	21, 112, 213, 268, 281
NheI	GCTAGC	1 cut(s)	302
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	1 cut(s)	168
PaqCI	CACCTGC	1 cut(s)	307
PctI	GAATGC	1 cut(s)	441
PfeI	GAWTC	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	512
PleI	GAGTC	4 cut(s)	211, 551, 562, 631
PpsI	GAGTC	4 cut(s)	211, 551, 562, 631
Psp124BI	GAGCTC	1 cut(s)	609
Psp6I	CCWGG	1 cut(s)	236
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	2 cut(s)	70, 248
PsuI	RGATCY	2 cut(s)	112, 268
RsaI	GTAC	3 cut(s)	312, 405, 461
RsaNI	GTAC	3 cut(s)	311, 404, 460
RseI	CAYNNNNRTG	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	609
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	1 cut(s)	511
Sau3AI	GATC	5 cut(s)	21, 112, 213, 268, 281
Sau96I	GGNCC	2 cut(s)	70, 248
ScaI	AGTACT	1 cut(s)	405
SchI	GAGTC	4 cut(s)	212, 551, 562, 632
ScrFI	CCNGG	1 cut(s)	238
SduI	GDGCHC	4 cut(s)	330, 345, 420, 609
SfaNI	GCATC	1 cut(s)	621
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	3 cut(s)	140, 419, 659
SmoI	CTYRAG	3 cut(s)	140, 419, 659
Sse9I	AATT	3 cut(s)	65, 288, 685
SsiI	CCGC	3 cut(s)	510, 513, 614
SspMI	CTAG	3 cut(s)	42, 303, 482
SstI	GAGCTC	1 cut(s)	609
StyD4I	CCNGG	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	330
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	2 cut(s)	253, 555
TasI	AATT	3 cut(s)	65, 288, 685
TatI	WGTACW	3 cut(s)	310, 403, 459
TauI	GCSGC	1 cut(s)	513
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TspDTI	ATGAA	3 cut(s)	146, 246, 534
TspGWI	ACGGA	1 cut(s)	45
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	88
XspI	CTAG	3 cut(s)	42, 303, 482
ZrmI	AGTACT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.