Rh7DG039700

Glutathione S-transferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
2934540 .. 2934986
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG039700.1

Sequence Viewer

Length: 447 bp
ATGACATATTTACCCATGTCAAGCGTACTCGAACAAACCACAGAACTTATTCTCAATTTGGTGCAGGTGTTTGAGTCCTTGGTGTTAGTGATCGAAAGCAGTGGAGAAGCACAAGAGAAAGCCATCAAAGAAGTGTCTGAGAAGGTAAAATTACTTGAAGCCGGACTCAAGGGTTTGTTTCCAGATGGCATTCCTTCAGTAGATGAATTCAGCAAAAATGTGACACTACTAGATTTGTTCATTCTCGCACACTTTGGCGAATATGAAGCTCATGAAGAAGTCCTTGGCCTAAAGCTTATCGACTCTGATAAGACTCCACTGGTAGCTTCCTGTATAACAGCTCTGATTGAGATCCCTGCAGTGAAAAAGTCGCGGATTCCTCATGAAAAGATGGTGGCCTTCCTCAAGTCCTATAGAGAAGATGCCCTCAAGTCTGCTACAGCTTGA

Protein Analysis

148

Amino Acids

16.3

Weight (kDa)

4.9

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000433)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62480 AT5G62480 AT5G62480
fragaria_vesca FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis pycom06g17020
rosa_chinensis RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 55
Acc36I ACCTGC 1 cut(s) 55
AccII CGCG 1 cut(s) 373
AciI CCGC 1 cut(s) 373
AclWI GGATC 1 cut(s) 346
AcsI RAATTY 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 1 cut(s) 27
AgsI TTSAA 1 cut(s) 158
AjuI GAANNNNNNNTTGG 2 cut(s) 267, 299
AluBI AGCT 5 cut(s) 269, 295, 326, 341, 443
AluI AGCT 5 cut(s) 269, 295, 326, 341, 443
AlwI GGATC 1 cut(s) 346
AoxI GGCC 2 cut(s) 286, 396
ApoI RAATTY 1 cut(s) 206
Asp700I GAANNNNTTC 1 cut(s) 48
BccI CCATC 3 cut(s) 131, 179, 385
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 3 cut(s) 357, 412, 438
BfuAI ACCTGC 1 cut(s) 55
BmsI GCATC 1 cut(s) 412
BpuEI CTTGAG 3 cut(s) 152, 389, 413
BsaBI GATNNNNATC 1 cut(s) 350
BsaJI CCNNGG 2 cut(s) 78, 283
Bse1I ACTGG 1 cut(s) 324
Bse8I GATNNNNATC 1 cut(s) 350
BseDI CCNNGG 2 cut(s) 78, 283
BseJI GATNNNNATC 1 cut(s) 350
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 324
BsgI GTGCAG 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 373
BshFI GGCC 2 cut(s) 288, 398
BsiSI CCGG 1 cut(s) 162
BsmI GAATGC 1 cut(s) 189
BsnI GGCC 2 cut(s) 288, 398
Bsp143I GATC 2 cut(s) 90, 351
BspACI CCGC 1 cut(s) 373
BspANI GGCC 2 cut(s) 288, 398
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 1 cut(s) 373
BspHI TCATGA 2 cut(s) 271, 382
BspMAI CTGCAG 1 cut(s) 361
BspMI ACCTGC 1 cut(s) 55
BspPI GGATC 1 cut(s) 346
BsrI ACTGG 1 cut(s) 324
BssECI CCNNGG 2 cut(s) 78, 283
BssMI GATC 2 cut(s) 90, 351
BssT1I CCWWGG 2 cut(s) 78, 283
BstDEI CTNAG 1 cut(s) 138
BstFNI CGCG 1 cut(s) 373
BstKTI GATC 2 cut(s) 93, 354
BstMBI GATC 2 cut(s) 90, 351
BstSFI CTRYAG 3 cut(s) 357, 412, 438
BstUI CGCG 1 cut(s) 373
BstX2I RGATCY 1 cut(s) 351
BstYI RGATCY 1 cut(s) 351
BsuRI GGCC 2 cut(s) 288, 398
BtsI GCAGTG 2 cut(s) 106, 366
BtsIMutI CAGTG 3 cut(s) 106, 317, 366
BveI ACCTGC 1 cut(s) 55
CciI TCATGA 2 cut(s) 271, 382
Csp6I GTAC 1 cut(s) 26
CviAII CATG 3 cut(s) 16, 272, 383
CviJI RGCY 9 cut(s) 122, 161, 269, 288, 295, 326, 341, 398, 443
CviKI_1 RGCY 9 cut(s) 122, 161, 269, 288, 295, 326, 341, 398, 443
CviQI GTAC 1 cut(s) 26
DdeI CTNAG 1 cut(s) 138
DpnI GATC 2 cut(s) 92, 353
DpnII GATC 2 cut(s) 90, 351
Eco130I CCWWGG 2 cut(s) 78, 283
Eco57I CTGAAG 1 cut(s) 180
EcoRI GAATTC 1 cut(s) 206
EcoT14I CCWWGG 2 cut(s) 78, 283
ErhI CCWWGG 2 cut(s) 78, 283
FaeI CATG 3 cut(s) 19, 275, 386
FaiI YATR 7 cut(s) 7, 17, 264, 273, 335, 384, 414
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FatI CATG 3 cut(s) 15, 271, 382
FspBI CTAG 1 cut(s) 230
HaeIII GGCC 2 cut(s) 288, 398
HapII CCGG 1 cut(s) 162
Hin1II CATG 3 cut(s) 19, 275, 386
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 5 cut(s) 74, 165, 302, 313, 376
HpaII CCGG 1 cut(s) 162
Hpy188I TCNGA 3 cut(s) 139, 307, 345
Hpy188III TCNNGA 3 cut(s) 182, 272, 383
HpyAV CCTTC 3 cut(s) 136, 204, 409
HpyCH4V TGCA 2 cut(s) 64, 359
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 3 cut(s) 19, 275, 386
Kzo9I GATC 2 cut(s) 90, 351
LpnPI CCDG 6 cut(s) 50, 175, 195, 305, 343, 369
LweI GCATC 1 cut(s) 412
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 220
MalI GATC 2 cut(s) 92, 353
MboI GATC 2 cut(s) 90, 351
MboII GAAGA 2 cut(s) 287, 431
MflI RGATCY 1 cut(s) 351
MluCI AATT 3 cut(s) 55, 149, 206
MlyI GAGTC 4 cut(s) 83, 159, 296, 307
MnlI CCTC 3 cut(s) 390, 413, 437
MroXI GAANNNNTTC 1 cut(s) 48
MspI CCGG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 189
MvnI CGCG 1 cut(s) 373
NdeII GATC 2 cut(s) 90, 351
NlaIII CATG 3 cut(s) 19, 275, 386
NmuCI GTSAC 1 cut(s) 220
PagI TCATGA 2 cut(s) 271, 382
PaqCI CACCTGC 1 cut(s) 55
PctI GAATGC 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 48
PfeI GAWTC 1 cut(s) 376
PleI GAGTC 4 cut(s) 82, 159, 296, 307
PpsI GAGTC 4 cut(s) 82, 159, 296, 307
PstI CTGCAG 1 cut(s) 361
PsuI RGATCY 1 cut(s) 351
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
Sau3AI GATC 2 cut(s) 90, 351
SchI GAGTC 4 cut(s) 83, 159, 296, 307
SetI ASST 7 cut(s) 69, 147, 271, 297, 328, 343, 445
SfaNI GCATC 1 cut(s) 412
SfcI CTRYAG 3 cut(s) 357, 412, 438
SmlI CTYRAG 3 cut(s) 167, 404, 428
SmoI CTYRAG 3 cut(s) 167, 404, 428
Sse9I AATT 3 cut(s) 55, 149, 206
SsiI CCGC 1 cut(s) 373
SspMI CTAG 1 cut(s) 230
StyI CCWWGG 2 cut(s) 78, 283
TaqI TCGA 3 cut(s) 30, 93, 300
TasI AATT 3 cut(s) 55, 149, 206
TfiI GAWTC 1 cut(s) 376
TscAI CASTG 3 cut(s) 106, 324, 366
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 5 cut(s) 219, 229, 279, 288, 399
TspRI CASTG 3 cut(s) 106, 324, 366
XapI RAATTY 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 48
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.