Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001147.1

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Forward (+)

78139 .. 78834

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001147.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgatcccaacaccatcactcctcaaatacaattctgttcacaaaaaggttcctgtacttgttcacaatggaaagcctattgctgaatcactaattattcttgaatacattgatgaaacatggaaaactggtcctaagcttctgcaggaggatccttacaaaagggctcaagttcgcttctgggctagctttctccagcaacatgtatttgagactatgtccctgttgtgcaaaactgatggagaagtacaagagaaggccatcaaagaattgtttgagaaattaaagacatttgaagagggaatcaaggacttattcccagacggtgcgccttctattgactgcagcaacaatctggggcttctggacattgtattgtgttcacagtttggccctcataaagttcaggaagaagtgcttggtataacaactattgatccagagaaaaacccacttttgtttacttggctgaaatctctgaatgagttgcctttagtgaaagagttaacccctcatgaaaagctagtatcagttcttcactttttcagaaactatgccctcaaatctagtgctgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

192

Amino Acids

21.86

Weight (kDa)

6.08

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	146, 159, 431
AfaI	GTAC	2 cut(s)	57, 249
AflIII	ACRYGT	1 cut(s)	202
AgsI	TTSAA	2 cut(s)	104, 296
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AluBI	AGCT	3 cut(s)	139, 189, 523
AluI	AGCT	3 cut(s)	139, 189, 523
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	3 cut(s)	146, 159, 431
AoxI	GGCC	2 cut(s)	258, 391
ApeKI	GCWGC	2 cut(s)	345, 572
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	2 cut(s)	131, 392
AsuNHI	GCTAGC	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	131
BamHI	GGATCC	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	169
BarI	GAAGNNNNNNTAC	2 cut(s)	519, 551
BbvI	GCAGC	2 cut(s)	357, 559
BccI	CCATC	3 cut(s)	22, 233, 269
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	3 cut(s)	186, 524, 567
BfmI	CTRYAG	2 cut(s)	143, 343
BisI	GCNGC	2 cut(s)	346, 573
BlsI	GCNGC	2 cut(s)	347, 574
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	2 cut(s)	131, 392
BmiI	GGNNCC	2 cut(s)	51, 153
BmtI	GCTAGC	1 cut(s)	189
BpmI	CTGGAG	1 cut(s)	179
Bpu10I	CCTNAGC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	153
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	133
BseRI	GAGGAG	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	357, 559
BshFI	GGCC	2 cut(s)	260, 393
BslFI	GGGAC	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	2 cut(s)	260, 393
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	3, 151, 436
BspANI	GGCC	2 cut(s)	260, 393
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	2 cut(s)	51, 153
BspMAI	CTGCAG	2 cut(s)	147, 347
BspOI	GCTAGC	1 cut(s)	189
BspPI	GGATC	3 cut(s)	146, 159, 431
BsrI	ACTGG	1 cut(s)	133
BssMI	GATC	3 cut(s)	3, 151, 436
Bst4CI	ACNGT	2 cut(s)	326, 387
Bst6I	CTCTTC	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	3 cut(s)	6, 154, 439
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	3 cut(s)	3, 151, 436
BstNSI	RCATGY	1 cut(s)	206
BstSFI	CTRYAG	2 cut(s)	143, 343
BstV1I	GCAGC	2 cut(s)	357, 559
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BsuRI	GGCC	2 cut(s)	260, 393
Cac8I	GCNNGC	1 cut(s)	187
CciI	TCATGA	1 cut(s)	514
CfoI	GCGC	1 cut(s)	331
Cfr13I	GGNCC	2 cut(s)	131, 392
Csp6I	GTAC	2 cut(s)	56, 248
CviAII	CATG	3 cut(s)	120, 203, 515
CviQI	GTAC	2 cut(s)	56, 248
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	3 cut(s)	5, 153, 438
DpnII	GATC	3 cut(s)	3, 151, 436
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	169
FaeI	CATG	3 cut(s)	123, 206, 518
FaiI	YATR	7 cut(s)	121, 204, 218, 399, 425, 516, 555
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	3 cut(s)	119, 202, 514
Fnu4HI	GCNGC	2 cut(s)	346, 573
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	2 cut(s)	346, 573
FspBI	CTAG	3 cut(s)	186, 524, 567
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	2 cut(s)	346, 573
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	2 cut(s)	260, 393
HhaI	GCGC	1 cut(s)	331
Hin1II	CATG	3 cut(s)	123, 206, 518
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	2 cut(s)	86, 303
HpaI	GTTAAC	1 cut(s)	507
Hpy166II	GTNNAC	5 cut(s)	40, 64, 383, 462, 507
Hpy188I	TCNGA	2 cut(s)	480, 548
Hpy188III	TCNNGA	5 cut(s)	101, 365, 407, 440, 515
Hpy8I	GTNNAC	5 cut(s)	40, 64, 383, 462, 507
HpyAV	CCTTC	2 cut(s)	250, 342
HpyCH4III	ACNGT	2 cut(s)	326, 387
HpyCH4V	TGCA	3 cut(s)	145, 231, 345
HpyF3I	CTNAG	1 cut(s)	135
Hsp92II	CATG	3 cut(s)	123, 206, 518
HspAI	GCGC	1 cut(s)	329
KspAI	GTTAAC	1 cut(s)	507
Kzo9I	GATC	3 cut(s)	3, 151, 436
Lsp1109I	GCAGC	2 cut(s)	357, 559
MaeI	CTAG	3 cut(s)	186, 524, 567
MalI	GATC	3 cut(s)	5, 153, 438
MboI	GATC	3 cut(s)	3, 151, 436
MboII	GAAGA	3 cut(s)	308, 422, 527
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	4 cut(s)	31, 93, 269, 281
MnlI	CCTC	6 cut(s)	32, 142, 292, 405, 522, 569
MseI	TTAA	2 cut(s)	284, 506
NdeII	GATC	3 cut(s)	3, 151, 436
NheI	GCTAGC	1 cut(s)	185
NlaIII	CATG	3 cut(s)	123, 206, 518
NlaIV	GGNNCC	2 cut(s)	51, 153
NspI	RCATGY	1 cut(s)	206
PagI	TCATGA	1 cut(s)	514
PciI	ACATGT	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	86, 303
PflFI	GACNNNGTC	1 cut(s)	217
PkrI	GCNGC	2 cut(s)	347, 574
PscI	ACATGT	1 cut(s)	202
PspN4I	GGNNCC	2 cut(s)	51, 153
PspPI	GGNCC	2 cut(s)	131, 392
PstI	CTGCAG	2 cut(s)	147, 347
PsuI	RGATCY	1 cut(s)	151
PsyI	GACNNNGTC	1 cut(s)	217
RsaI	GTAC	2 cut(s)	57, 249
RsaNI	GTAC	2 cut(s)	56, 248
SaqAI	TTAA	2 cut(s)	284, 506
SatI	GCNGC	2 cut(s)	346, 573
Sau3AI	GATC	3 cut(s)	3, 151, 436
Sau96I	GGNCC	2 cut(s)	131, 392
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	4 cut(s)	51, 141, 191, 525
SfcI	CTRYAG	2 cut(s)	143, 343
SinI	GGWCC	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
Sse9I	AATT	4 cut(s)	31, 93, 269, 281
SspMI	CTAG	3 cut(s)	186, 524, 567
TaaI	ACNGT	2 cut(s)	326, 387
TasI	AATT	4 cut(s)	31, 93, 269, 281
TatI	WGTACW	2 cut(s)	55, 247
TfiI	GAWTC	2 cut(s)	86, 303
Tru1I	TTAA	2 cut(s)	284, 506
Tru9I	TTAA	2 cut(s)	284, 506
TseI	GCWGC	2 cut(s)	345, 572
TspDTI	ATGAA	2 cut(s)	129, 531
Tth111I	GACNNNGTC	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	131
XceI	RCATGY	1 cut(s)	206
XspI	CTAG	3 cut(s)	186, 524, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.