Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Forward (+)

64454491 .. 64455401

Gene Structure 911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTGGGCTAGTCCCTATGTTAAGAGGGTGGAATTTTCCCTCAAAGTGAAGGGTATACCCTATGAATATGTGGAAGAAGATTTGAGCAACAAAAGTCCATTGCTCCTCAAGTTCAACCCTGTTCATAAGAAGGTTCTGTTGCTTGTCCACAATGGGAAAGCCATTGCCGAGTCTCTTGTGATCATTGAATATATTGATGAAACCTGGAAAAGCGGCCCTCAACTTCTACCGGAAGATCCATACAAACGATCCCAAATTCGCTTCGGGCTAGCTATATGCAGCAGCTCGGAAGAAGTCCTTGGCCTAAAGCTTATCGACTCCAATAAGACTCCACTCGCTAGTTTCTGCATAACGGCTACGATTGAGATCCCTGCGGTGAAAAAGTCGCGGATTCCTCATGAAAAGATGGTGGCCTTCCTCAAGTCCTATAGAGAAGATGCCCTCAAGTCTGCTGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

153

Amino Acids

17.22

Weight (kDa)

8.98

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	2 - 67	5.9e-13	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	3 - 68	3.9e-13	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	3 - 68	9.6e-12	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	55
AccII	CGCG	1 cut(s)	388
AciI	CCGC	3 cut(s)	213, 374, 388
AclWI	GGATC	3 cut(s)	230, 243, 361
AcsI	RAATTY	2 cut(s)	32, 255
AgsI	TTSAA	2 cut(s)	115, 188
AjnI	CCWGG	1 cut(s)	203
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AluBI	AGCT	4 cut(s)	272, 285, 310, 458
AluI	AGCT	4 cut(s)	272, 285, 310, 458
Alw26I	GTCTC	1 cut(s)	177
AlwI	GGATC	3 cut(s)	230, 243, 361
AoxI	GGCC	3 cut(s)	214, 301, 411
ApeKI	GCWGC	4 cut(s)	279, 282, 452, 455
ApoI	RAATTY	2 cut(s)	32, 255
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	388
AsuNHI	GCTAGC	1 cut(s)	268
BbvI	GCAGC	3 cut(s)	291, 294, 439
BccI	CCATC	1 cut(s)	400
BceAI	ACGGC	1 cut(s)	369
BciT130I	CCWGG	1 cut(s)	205
BclI	TGATCA	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	3 cut(s)	9, 269, 339
BfmI	CTRYAG	2 cut(s)	427, 453
BisI	GCNGC	5 cut(s)	214, 280, 283, 453, 456
BlsI	GCNGC	5 cut(s)	215, 281, 284, 454, 457
Bme1390I	CCNGG	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	205
BmsI	GCATC	1 cut(s)	427
BmtI	GCTAGC	1 cut(s)	272
BpuEI	CTTGAG	3 cut(s)	92, 404, 428
BsaBI	GATNNNNATC	1 cut(s)	365
BsaJI	CCNNGG	1 cut(s)	298
BsaWI	WCCGGW	1 cut(s)	229
Bse3DI	GCAATG	2 cut(s)	98, 162
Bse8I	GATNNNNATC	1 cut(s)	365
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	298
BseJI	GATNNNNATC	1 cut(s)	365
BseMI	GCAATG	2 cut(s)	98, 162
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	3 cut(s)	291, 294, 439
Bsh1236I	CGCG	1 cut(s)	388
BshFI	GGCC	3 cut(s)	216, 303, 413
BsiSI	CCGG	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	177
BsnI	GGCC	3 cut(s)	216, 303, 413
Bsp143I	GATC	4 cut(s)	180, 235, 248, 366
BspACI	CCGC	3 cut(s)	213, 374, 388
BspANI	GGCC	3 cut(s)	216, 303, 413
BspFNI	CGCG	1 cut(s)	388
BspHI	TCATGA	1 cut(s)	397
BspMAI	CTGCAG	1 cut(s)	457
BspOI	GCTAGC	1 cut(s)	272
BspPI	GGATC	3 cut(s)	230, 243, 361
BsrDI	GCAATG	2 cut(s)	98, 162
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	4 cut(s)	180, 235, 248, 366
BssNAI	GTATAC	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	298
Bst1107I	GTATAC	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	270
BstFNI	CGCG	1 cut(s)	388
BstKTI	GATC	4 cut(s)	183, 238, 251, 369
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	4 cut(s)	180, 235, 248, 366
BstNI	CCWGG	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	203
BstSFI	CTRYAG	2 cut(s)	427, 453
BstUI	CGCG	1 cut(s)	388
BstV1I	GCAGC	3 cut(s)	291, 294, 439
BstX2I	RGATCY	2 cut(s)	235, 366
BstYI	RGATCY	2 cut(s)	235, 366
BstZ17I	GTATAC	1 cut(s)	56
BsuRI	GGCC	3 cut(s)	216, 303, 413
Cac8I	GCNNGC	1 cut(s)	270
CciI	TCATGA	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	215
CviAII	CATG	1 cut(s)	398
DpnI	GATC	4 cut(s)	182, 237, 250, 368
DpnII	GATC	4 cut(s)	180, 235, 248, 366
Eco130I	CCWWGG	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	1 cut(s)	401
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FatI	CATG	1 cut(s)	397
FbaI	TGATCA	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	5 cut(s)	214, 280, 283, 453, 456
Fsp4HI	GCNGC	5 cut(s)	214, 280, 283, 453, 456
FspBI	CTAG	3 cut(s)	9, 269, 339
GluI	GCNGC	5 cut(s)	214, 280, 283, 453, 456
HaeIII	GGCC	3 cut(s)	216, 303, 413
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	1 cut(s)	401
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	4 cut(s)	170, 317, 328, 391
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	2 cut(s)	56, 148
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	1 cut(s)	398
Hpy8I	GTNNAC	2 cut(s)	56, 148
HpyAV	CCTTC	3 cut(s)	43, 124, 424
HpyCH4V	TGCA	3 cut(s)	279, 348, 455
Hsp92II	CATG	1 cut(s)	401
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	4 cut(s)	180, 235, 248, 366
LmnI	GCTCC	1 cut(s)	108
LpnPI	CCDG	5 cut(s)	132, 190, 217, 243, 384
Lsp1109I	GCAGC	3 cut(s)	291, 294, 439
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	3 cut(s)	9, 269, 339
MalI	GATC	4 cut(s)	182, 237, 250, 368
MboI	GATC	4 cut(s)	180, 235, 248, 366
MboII	GAAGA	5 cut(s)	86, 89, 245, 302, 446
MflI	RGATCY	2 cut(s)	235, 366
MluCI	AATT	2 cut(s)	32, 255
MlyI	GAGTC	3 cut(s)	179, 311, 322
MnlI	CCTC	7 cut(s)	18, 50, 116, 228, 405, 428, 452
MseI	TTAA	1 cut(s)	21
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	205
MvnI	CGCG	1 cut(s)	388
NdeII	GATC	4 cut(s)	180, 235, 248, 366
NheI	GCTAGC	1 cut(s)	268
NlaIII	CATG	1 cut(s)	401
NmeAIII	GCCGAG	1 cut(s)	193
PagI	TCATGA	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	5 cut(s)	215, 281, 284, 454, 457
PleI	GAGTC	3 cut(s)	178, 311, 322
PpsI	GAGTC	3 cut(s)	178, 311, 322
Psp6I	CCWGG	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	203
PspPI	GGNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	457
PsuI	RGATCY	2 cut(s)	235, 366
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	5 cut(s)	214, 280, 283, 453, 456
Sau3AI	GATC	4 cut(s)	180, 235, 248, 366
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	3 cut(s)	179, 311, 322
ScrFI	CCNGG	1 cut(s)	205
SetI	ASST	6 cut(s)	135, 206, 274, 287, 312, 460
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	2 cut(s)	427, 453
SmlI	CTYRAG	3 cut(s)	107, 419, 443
SmoI	CTYRAG	3 cut(s)	107, 419, 443
Sse9I	AATT	2 cut(s)	32, 255
SsiI	CCGC	3 cut(s)	213, 374, 388
SspMI	CTAG	3 cut(s)	9, 269, 339
StyD4I	CCNGG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	298
TaqI	TCGA	1 cut(s)	315
TasI	AATT	2 cut(s)	32, 255
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TseI	GCWGC	4 cut(s)	279, 282, 452, 455
TspDTI	ATGAA	4 cut(s)	78, 113, 213, 414
XapI	RAATTY	2 cut(s)	32, 255
XmiI	GTMKAC	1 cut(s)	55
XspI	CTAG	3 cut(s)	9, 269, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.