Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Forward (+)

2772574 .. 2772984

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG041700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAAGTTACTTGATGAAGGAATCAAGACCTTTTTCCCAGATGGGAATCCAACTTTTGAGGCTAAGAATTTAGGGCTCCTAGACATTGTAGGAAGTTCAGTGTTTTGTGCATTTTCAGCTGTAGAAGAATTGATTGTTGTAAAGATCATAGACCCAGAGAAGACTCCAGTGCTATTCTCTTGGATAACAGCTCTGAGAGAGCAACCTATAGTGATGGAGACAATTGCTCCTCCTGAAAAGATGGTGTCACTTATTCTTAGGCCTTGGAGACAGGGTTTCATCAATCCTCATCTTTCTCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

101

Amino Acids

11.31

Weight (kDa)

5.02

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	67
AluBI	AGCT	2 cut(s)	119, 191
AluI	AGCT	2 cut(s)	119, 191
Alw26I	GTCTC	2 cut(s)	212, 262
AoxI	GGCC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	167
BccI	CCATC	3 cut(s)	35, 208, 235
BcoDI	GTCTC	2 cut(s)	212, 262
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	2 cut(s)	120, 207
BmiI	GGNNCC	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	150
BsaBI	GATNNNNATC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	263
BsaXI	ACNNNNNCTCC	4 cut(s)	211, 241, 259, 289
Bse1I	ACTGG	1 cut(s)	167
Bse8I	GATNNNNATC	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	263
BseJI	GATNNNNATC	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	262
BsmAI	GTCTC	2 cut(s)	212, 262
BsnI	GGCC	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	144
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	263
BstDEI	CTNAG	3 cut(s)	63, 194, 257
BstKTI	GATC	1 cut(s)	147
BstMAI	GTCTC	2 cut(s)	212, 262
BstMBI	GATC	1 cut(s)	144
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstSFI	CTRYAG	2 cut(s)	120, 207
BstV2I	GAAGAC	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	105, 174
CviJI	RGCY	5 cut(s)	62, 76, 119, 191, 262
CviKI_1	RGCY	5 cut(s)	62, 76, 119, 191, 262
DdeI	CTNAG	3 cut(s)	63, 194, 257
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	263
Eco147I	AGGCCT	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	263
EcoT38I	GRGCYC	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	263
FaiI	YATR	2 cut(s)	149, 209
FriOI	GRGCYC	1 cut(s)	78
FspBI	CTAG	1 cut(s)	80
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	262
HinfI	GANTC	3 cut(s)	21, 46, 163
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	2 cut(s)	25, 233
HpyAV	CCTTC	1 cut(s)	11
HpyCH4V	TGCA	1 cut(s)	110
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	3 cut(s)	63, 194, 257
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	2 cut(s)	81, 232
LpnPI	CCDG	5 cut(s)	51, 168, 180, 246, 257
MaeI	CTAG	1 cut(s)	80
MaeIII	GTNAC	2 cut(s)	6, 246
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	2 cut(s)	137, 172
MfeI	CAATTG	1 cut(s)	222
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	3 cut(s)	67, 128, 222
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	3 cut(s)	52, 240, 297
MseI	TTAA	1 cut(s)	304
MspA1I	CMGCKG	1 cut(s)	119
MunI	CAATTG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	1 cut(s)	144
NlaIV	GGNNCC	1 cut(s)	77
NmuCI	GTSAC	1 cut(s)	246
PceI	AGGCCT	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	21, 46
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	77
PvuII	CAGCTG	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	304
Sau3AI	GATC	1 cut(s)	144
SchI	GAGTC	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	4 cut(s)	32, 121, 193, 208
SfcI	CTRYAG	2 cut(s)	120, 207
Sse9I	AATT	3 cut(s)	67, 128, 222
SseBI	AGGCCT	1 cut(s)	262
SspMI	CTAG	1 cut(s)	80
StuI	AGGCCT	1 cut(s)	262
StyI	CCWWGG	1 cut(s)	263
TasI	AATT	3 cut(s)	67, 128, 222
TfiI	GAWTC	2 cut(s)	21, 46
Tru1I	TTAA	1 cut(s)	304
Tru9I	TTAA	1 cut(s)	304
TscAI	CASTG	2 cut(s)	105, 174
TseFI	GTSAC	1 cut(s)	246
Tsp45I	GTSAC	1 cut(s)	246
TspDTI	ATGAA	3 cut(s)	17, 30, 268
TspRI	CASTG	2 cut(s)	105, 174
XapI	RAATTY	1 cut(s)	67
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.