Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Forward (+)

64366792 .. 64367574

Gene Structure 783 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTGGGCTAGTCCTTTCTCTAAGAGTGTAGAGCTGGCGCTGAAAACCAAAGTCATTTCCTTTGAGTTTGTTGACGAAGATTTGAGGAACAAGAGTCCGTCACTCCTCAAATACAATCCTGTTCACAAAAAGGTTCCTGTACTTGTTCACAATGGAAAGCCTATTGCTGAATCACTAATTATTCTTGAATACATTGATGAAACATGGAAAACTGGTCCTAAGCTTCTGCCGGAGGATCTTTACAAAAGGGCTCGAGTTCGCTTCTGGGCTAGCTTTCTCCAGCAACATGTATTTGAGACTATGTCCCTGTTGTGCAAAACTGATGGAGAAGTACAAGAGAAGGCCAACAGAGAATTGTTTGAGAAATTAAAGACATTTGAAGAGGGAATCAAGGACTTATTCCCAGACGGTGCGCCTTCTATTGACTGCAGCAACAATCTGGGGCTTCTGGACATTGTATTGTGTTCACAGTTTGGCCCTCATAAAGTTCAGGAAGAAGTGCTTGGTATAACAACTATTGACCCAGAGAAAACCCCACTTTTGTTTACTTGGCTGAAATCTCTGAATGAGTTGCCTTTAGTGAAAGAGTTAACCCCTCCTTATGAAAAGCTAGTAGCAGTTCTTCACTTTTTCAGAAACTATGCCCTCAAATCTAGTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

221

Amino Acids

25.25

Weight (kDa)

6.24

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	2 - 67	1.6e-17	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	3 - 68	3.3e-13	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	3 - 68	1.9e-12	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	243
AfaI	GTAC	2 cut(s)	141, 333
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	2 cut(s)	188, 380
AjuI	GAANNNNNNNTTGG	2 cut(s)	486, 518
AluBI	AGCT	4 cut(s)	34, 223, 273, 610
AluI	AGCT	4 cut(s)	34, 223, 273, 610
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	1 cut(s)	243
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	2 cut(s)	342, 475
ApeKI	GCWGC	2 cut(s)	429, 659
AspLEI	GCGC	2 cut(s)	40, 415
AspS9I	GGNCC	2 cut(s)	215, 476
AsuNHI	GCTAGC	1 cut(s)	269
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	253
BarI	GAAGNNNNNNTAC	2 cut(s)	606, 638
BbvI	GCAGC	2 cut(s)	441, 646
BccI	CCATC	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	4 cut(s)	9, 270, 611, 654
BfmI	CTRYAG	1 cut(s)	427
BfoI	RGCGCY	1 cut(s)	41
BisI	GCNGC	2 cut(s)	430, 660
BlsI	GCNGC	2 cut(s)	431, 661
Bme18I	GGWCC	1 cut(s)	215
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	2 cut(s)	215, 476
BmiI	GGNNCC	1 cut(s)	135
BmtI	GCTAGC	1 cut(s)	273
BpmI	CTGGAG	1 cut(s)	263
Bpu10I	CCTNAGC	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	217
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	2 cut(s)	441, 646
BshFI	GGCC	2 cut(s)	344, 477
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	289
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	289
BsnI	GGCC	2 cut(s)	344, 477
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	235
BspANI	GGCC	2 cut(s)	344, 477
BspLI	GGNNCC	1 cut(s)	135
BspMAI	CTGCAG	1 cut(s)	431
BspOI	GCTAGC	1 cut(s)	273
BspPI	GGATC	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	217
BssMI	GATC	1 cut(s)	235
Bst4CI	ACNGT	2 cut(s)	410, 471
Bst6I	CTCTTC	1 cut(s)	375
BstC8I	GCNNGC	2 cut(s)	36, 271
BstDEI	CTNAG	2 cut(s)	21, 219
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	2 cut(s)	40, 415
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	235
BstNSI	RCATGY	1 cut(s)	290
BstSFI	CTRYAG	1 cut(s)	427
BstV1I	GCAGC	2 cut(s)	441, 646
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	344, 477
Cac8I	GCNNGC	2 cut(s)	36, 271
CfoI	GCGC	2 cut(s)	40, 415
Cfr13I	GGNCC	2 cut(s)	215, 476
Csp6I	GTAC	2 cut(s)	140, 332
CviAII	CATG	2 cut(s)	204, 287
CviQI	GTAC	2 cut(s)	140, 332
DdeI	CTNAG	2 cut(s)	21, 219
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	253
FaeI	CATG	2 cut(s)	207, 290
FaiI	YATR	7 cut(s)	205, 288, 302, 483, 509, 603, 642
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	2 cut(s)	203, 286
Fnu4HI	GCNGC	2 cut(s)	430, 660
FriOI	GRGCYC	1 cut(s)	253
Fsp4HI	GCNGC	2 cut(s)	430, 660
FspBI	CTAG	4 cut(s)	9, 270, 611, 654
GlaI	GCGC	2 cut(s)	39, 414
GluI	GCNGC	2 cut(s)	430, 660
GsuI	CTGGAG	1 cut(s)	263
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	344, 477
HapII	CCGG	1 cut(s)	230
HhaI	GCGC	2 cut(s)	40, 415
Hin1II	CATG	2 cut(s)	207, 290
Hin6I	GCGC	2 cut(s)	38, 413
HinP1I	GCGC	2 cut(s)	38, 413
HincII	GTYRAC	2 cut(s)	73, 591
HindII	GTYRAC	2 cut(s)	73, 591
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	3 cut(s)	94, 170, 387
HpaI	GTTAAC	1 cut(s)	591
HpaII	CCGG	1 cut(s)	230
Hpy166II	GTNNAC	6 cut(s)	73, 124, 148, 467, 546, 591
Hpy188I	TCNGA	2 cut(s)	564, 635
Hpy188III	TCNNGA	3 cut(s)	185, 449, 491
Hpy8I	GTNNAC	6 cut(s)	73, 124, 148, 467, 546, 591
HpyAV	CCTTC	2 cut(s)	334, 426
HpyCH4III	ACNGT	2 cut(s)	410, 471
HpyCH4V	TGCA	2 cut(s)	315, 429
HpyF3I	CTNAG	2 cut(s)	21, 219
Hsp92II	CATG	2 cut(s)	207, 290
HspAI	GCGC	2 cut(s)	38, 413
KspAI	GTTAAC	1 cut(s)	591
Kzo9I	GATC	1 cut(s)	235
Lsp1109I	GCAGC	2 cut(s)	441, 646
MaeI	CTAG	4 cut(s)	9, 270, 611, 654
MaeIII	GTNAC	1 cut(s)	99
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	4 cut(s)	89, 392, 506, 614
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	3 cut(s)	177, 353, 365
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	7 cut(s)	78, 116, 226, 376, 489, 606, 656
MseI	TTAA	2 cut(s)	368, 590
MspI	CCGG	1 cut(s)	230
NdeII	GATC	1 cut(s)	235
NheI	GCTAGC	1 cut(s)	269
NlaIII	CATG	2 cut(s)	207, 290
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	99
NspI	RCATGY	1 cut(s)	290
PaeR7I	CTCGAG	1 cut(s)	252
PciI	ACATGT	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	170, 387
PflFI	GACNNNGTC	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	431, 661
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PscI	ACATGT	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	215, 476
PspXI	VCTCGAGB	1 cut(s)	252
PstI	CTGCAG	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	235
PsyI	GACNNNGTC	1 cut(s)	301
RsaI	GTAC	2 cut(s)	141, 333
RsaNI	GTAC	2 cut(s)	140, 332
SaqAI	TTAA	2 cut(s)	368, 590
SatI	GCNGC	2 cut(s)	430, 660
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	2 cut(s)	215, 476
SchI	GAGTC	1 cut(s)	103
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	5 cut(s)	36, 135, 225, 275, 612
SfcI	CTRYAG	1 cut(s)	427
Sfr274I	CTCGAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	215
SlaI	CTCGAG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
Sse9I	AATT	3 cut(s)	177, 353, 365
SspMI	CTAG	4 cut(s)	9, 270, 611, 654
TaaI	ACNGT	2 cut(s)	410, 471
TaqI	TCGA	1 cut(s)	253
TasI	AATT	3 cut(s)	177, 353, 365
TatI	WGTACW	2 cut(s)	139, 331
TfiI	GAWTC	2 cut(s)	170, 387
Tru1I	TTAA	2 cut(s)	368, 590
Tru9I	TTAA	2 cut(s)	368, 590
TseFI	GTSAC	1 cut(s)	99
TseI	GCWGC	2 cut(s)	429, 659
Tsp45I	GTSAC	1 cut(s)	99
TspDTI	ATGAA	2 cut(s)	213, 618
TspGWI	ACGGA	1 cut(s)	87
Tth111I	GACNNNGTC	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	215
XceI	RCATGY	1 cut(s)	290
XhoI	CTCGAG	1 cut(s)	252
XspI	CTAG	4 cut(s)	9, 270, 611, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.