Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007079.1

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Reverse (-)

19148 .. 20462

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007079.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atgctctgcacttggctcctcgcagctcatcgctttgtctgtgatggcgtagatagcccctgtgttcgcaaattcaatcaagacaaggtgatcctatacggagtgtgggctagtccctatgttaagagggtggaatttgccctcaaagtgaagggtataccctttgaatatgtggaagaagatttgagaaacaaaagtccattgctcctcaagttcaaccctgttcataagaaggttcctgtgcttgtccacaatgggaaagccattgctgagtctcttgtgatcattgaatatattgatgaaacctggaaaactggccctcaacttctaccagaggatccatacaaacgatcccaaattcgcttctgggctagctatatgcagcaggtgtttgagtccttggtgttagtaatcgaaagcagtggagaagcacaagagaaagccatcaaagaagtgtctgagaaggtaaaattacttgaagccggactcaagggtttgttcccagatggcattccttcagtagatgaattcagcaaaaatgtgacactactagatttgttcattctcgcacactttggcgaatatgaagctcatgaagaagtccttggcctaaagcttatcgactccgataagactccactggtagcttcctgcataacagctctgattgagatccctgcagtgaaaaagtcgcggattcctcatgaaaagatggtggccttcctcaagtcctatagagaagatgccctcaagtctgctacagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

255

Amino Acids

28.82

Weight (kDa)

6.34

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	376
Acc36I	ACCTGC	1 cut(s)	376
AccI	GTMKAC	1 cut(s)	157
AccII	CGCG	1 cut(s)	694
AciI	CCGC	1 cut(s)	694
AclWI	GGATC	5 cut(s)	85, 332, 345, 345, 667
AcsI	RAATTY	4 cut(s)	71, 134, 357, 527
AcuI	CTGAAG	1 cut(s)	501
AgsI	TTSAA	5 cut(s)	76, 167, 217, 290, 479
AjnI	CCWGG	1 cut(s)	305
AjuI	GAANNNNNNNTTGG	2 cut(s)	588, 620
AluBI	AGCT	7 cut(s)	26, 375, 590, 616, 647, 662, 764
AluI	AGCT	7 cut(s)	26, 375, 590, 616, 647, 662, 764
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	5 cut(s)	85, 332, 345, 345, 667
AoxI	GGCC	3 cut(s)	316, 607, 717
ApeKI	GCWGC	2 cut(s)	23, 382
ApoI	RAATTY	4 cut(s)	71, 134, 357, 527
AspS9I	GGNCC	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	100
AsuNHI	GCTAGC	1 cut(s)	371
BamHI	GGATCC	1 cut(s)	337
BbvI	GCAGC	2 cut(s)	35, 394
BccI	CCATC	4 cut(s)	38, 452, 500, 706
BciT130I	CCWGG	1 cut(s)	307
BclI	TGATCA	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	3 cut(s)	111, 372, 551
BfmI	CTRYAG	3 cut(s)	678, 733, 759
BfuAI	ACCTGC	1 cut(s)	376
BisI	GCNGC	2 cut(s)	24, 383
BlsI	GCNGC	2 cut(s)	25, 384
Bme1390I	CCNGG	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	3 cut(s)	17, 237, 339
BmrFI	CCNGG	1 cut(s)	307
BmsI	GCATC	1 cut(s)	733
BmtI	GCTAGC	1 cut(s)	375
BpuEI	CTTGAG	4 cut(s)	194, 473, 710, 734
BsaBI	GATNNNNATC	1 cut(s)	671
BsaJI	CCNNGG	2 cut(s)	399, 604
Bse1I	ACTGG	2 cut(s)	319, 645
Bse3DI	GCAATG	2 cut(s)	200, 264
Bse8I	GATNNNNATC	1 cut(s)	671
BseBI	CCWGG	1 cut(s)	307
BseDI	CCNNGG	2 cut(s)	399, 604
BseJI	GATNNNNATC	1 cut(s)	671
BseMI	GCAATG	2 cut(s)	200, 264
BseMII	CTCAG	2 cut(s)	261, 450
BseNI	ACTGG	2 cut(s)	319, 645
BseRI	GAGGAG	2 cut(s)	8, 197
BseXI	GCAGC	2 cut(s)	35, 394
Bsh1236I	CGCG	1 cut(s)	694
BshFI	GGCC	3 cut(s)	318, 609, 719
BsiSI	CCGG	1 cut(s)	483
BslFI	GGGAC	1 cut(s)	99
BsmAI	GTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	99
BsmI	GAATGC	1 cut(s)	510
BsnI	GGCC	3 cut(s)	318, 609, 719
Bsp143I	GATC	5 cut(s)	90, 282, 337, 350, 672
BspACI	CCGC	1 cut(s)	694
BspANI	GGCC	3 cut(s)	318, 609, 719
BspCNI	CTCAG	2 cut(s)	262, 451
BspFNI	CGCG	1 cut(s)	694
BspHI	TCATGA	2 cut(s)	592, 703
BspLI	GGNNCC	3 cut(s)	17, 237, 339
BspMAI	CTGCAG	1 cut(s)	682
BspMI	ACCTGC	1 cut(s)	376
BspOI	GCTAGC	1 cut(s)	375
BspPI	GGATC	5 cut(s)	85, 332, 345, 345, 667
BsrDI	GCAATG	2 cut(s)	200, 264
BsrI	ACTGG	2 cut(s)	319, 645
BssECI	CCNNGG	2 cut(s)	399, 604
BssMI	GATC	5 cut(s)	90, 282, 337, 350, 672
BssNAI	GTATAC	1 cut(s)	158
BssT1I	CCWWGG	2 cut(s)	399, 604
Bst1107I	GTATAC	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	2 cut(s)	270, 459
BstFNI	CGCG	1 cut(s)	694
BstKTI	GATC	5 cut(s)	93, 285, 340, 353, 675
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	5 cut(s)	90, 282, 337, 350, 672
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNI	CCWGG	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	305
BstSFI	CTRYAG	3 cut(s)	678, 733, 759
BstUI	CGCG	1 cut(s)	694
BstV1I	GCAGC	2 cut(s)	35, 394
BstX2I	RGATCY	2 cut(s)	337, 672
BstYI	RGATCY	2 cut(s)	337, 672
BstZ17I	GTATAC	1 cut(s)	158
BsuRI	GGCC	3 cut(s)	318, 609, 719
BtgZI	GCGATG	1 cut(s)	14
BtsI	GCAGTG	2 cut(s)	427, 687
BtsIMutI	CAGTG	3 cut(s)	427, 638, 687
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	373
CciI	TCATGA	2 cut(s)	592, 703
Cfr13I	GGNCC	1 cut(s)	317
CviAII	CATG	2 cut(s)	593, 704
DdeI	CTNAG	2 cut(s)	270, 459
DpnI	GATC	5 cut(s)	92, 284, 339, 352, 674
DpnII	GATC	5 cut(s)	90, 282, 337, 350, 672
Eco130I	CCWWGG	2 cut(s)	399, 604
Eco57I	CTGAAG	1 cut(s)	501
EcoRI	GAATTC	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	305
EcoT14I	CCWWGG	2 cut(s)	399, 604
ErhI	CCWWGG	2 cut(s)	399, 604
FaeI	CATG	2 cut(s)	596, 707
FalI	AAGNNNNNCTT	2 cut(s)	588, 620
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	2 cut(s)	592, 703
FbaI	TGATCA	1 cut(s)	282
FblI	GTMKAC	1 cut(s)	157
Fnu4HI	GCNGC	2 cut(s)	24, 383
Fsp4HI	GCNGC	2 cut(s)	24, 383
FspBI	CTAG	3 cut(s)	111, 372, 551
GluI	GCNGC	2 cut(s)	24, 383
HaeIII	GGCC	3 cut(s)	318, 609, 719
HapII	CCGG	1 cut(s)	483
Hin1II	CATG	2 cut(s)	596, 707
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	6 cut(s)	272, 395, 486, 623, 634, 697
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	2 cut(s)	158, 250
Hpy188I	TCNGA	3 cut(s)	460, 628, 666
Hpy188III	TCNNGA	3 cut(s)	80, 593, 704
Hpy8I	GTNNAC	2 cut(s)	158, 250
HpyAV	CCTTC	5 cut(s)	145, 226, 457, 525, 730
HpyCH4V	TGCA	4 cut(s)	9, 382, 654, 680
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	2 cut(s)	270, 459
Hsp92II	CATG	2 cut(s)	596, 707
Ksp22I	TGATCA	1 cut(s)	282
Kzo9I	GATC	5 cut(s)	90, 282, 337, 350, 672
LmnI	GCTCC	2 cut(s)	21, 210
Lsp1109I	GCAGC	2 cut(s)	35, 394
LweI	GCATC	1 cut(s)	733
MaeI	CTAG	3 cut(s)	111, 372, 551
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	5 cut(s)	92, 284, 339, 352, 674
MboI	GATC	5 cut(s)	90, 282, 337, 350, 672
MboII	GAAGA	4 cut(s)	188, 191, 608, 752
MflI	RGATCY	2 cut(s)	337, 672
MluCI	AATT	5 cut(s)	71, 134, 357, 470, 527
MlyI	GAGTC	5 cut(s)	281, 404, 480, 617, 628
MnlI	CCTC	9 cut(s)	29, 120, 152, 218, 328, 330, 711, 734, 758
MseI	TTAA	1 cut(s)	123
MspI	CCGG	1 cut(s)	483
MspR9I	CCNGG	1 cut(s)	307
Mva1269I	GAATGC	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	307
MvnI	CGCG	1 cut(s)	694
MwoI	GCNNNNNNNGC	1 cut(s)	54
NdeII	GATC	5 cut(s)	90, 282, 337, 350, 672
NheI	GCTAGC	1 cut(s)	371
NlaIII	CATG	2 cut(s)	596, 707
NlaIV	GGNNCC	3 cut(s)	17, 237, 339
NmuCI	GTSAC	1 cut(s)	541
PagI	TCATGA	2 cut(s)	592, 703
PaqCI	CACCTGC	1 cut(s)	376
PctI	GAATGC	1 cut(s)	510
PfeI	GAWTC	1 cut(s)	697
PkrI	GCNGC	2 cut(s)	25, 384
PleI	GAGTC	5 cut(s)	280, 403, 480, 617, 628
PpsI	GAGTC	5 cut(s)	280, 403, 480, 617, 628
Psp6I	CCWGG	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	3 cut(s)	17, 237, 339
PspPI	GGNCC	1 cut(s)	317
PstI	CTGCAG	1 cut(s)	682
PsuI	RGATCY	2 cut(s)	337, 672
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	2 cut(s)	24, 383
Sau3AI	GATC	5 cut(s)	90, 282, 337, 350, 672
Sau96I	GGNCC	1 cut(s)	317
SchI	GAGTC	5 cut(s)	281, 404, 480, 617, 628
ScrFI	CCNGG	1 cut(s)	307
SfaNI	GCATC	1 cut(s)	733
SfcI	CTRYAG	3 cut(s)	678, 733, 759
SmlI	CTYRAG	4 cut(s)	209, 488, 725, 749
SmoI	CTYRAG	4 cut(s)	209, 488, 725, 749
Sse9I	AATT	5 cut(s)	71, 134, 357, 470, 527
SsiI	CCGC	1 cut(s)	694
SspMI	CTAG	3 cut(s)	111, 372, 551
StyD4I	CCNGG	1 cut(s)	305
StyI	CCWWGG	2 cut(s)	399, 604
TaqI	TCGA	2 cut(s)	414, 621
TasI	AATT	5 cut(s)	71, 134, 357, 470, 527
TfiI	GAWTC	1 cut(s)	697
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	3 cut(s)	427, 645, 687
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	2 cut(s)	23, 382
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	7 cut(s)	215, 315, 540, 550, 600, 609, 720
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	3 cut(s)	427, 645, 687
XapI	RAATTY	4 cut(s)	71, 134, 357, 527
XmiI	GTMKAC	1 cut(s)	157
XspI	CTAG	3 cut(s)	111, 372, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.