Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Reverse (-)

64368035 .. 64369525

Gene Structure 1491 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCAGGGAAAGAGAGTGTGATAGTACATGGGATGTGGGCAAGCCCTTACTCTAAGAGGGTTGAACTAGCCTTCAAAGTTAAGGGCATACCCTATGAATATGTGGAAGAAGATTTCAAGAACAAAACCCCAGAGCTGCTCAAGTACAACCCAGTTCACAAGAAGATCCCGGTTCTTGTTCACAATGGAAAACCTATTGCTGAGTCTCTTGTCATCCTTGAATATATTGAAGAAGTTTGGAAAGATTGTCCTCAACTTCTCCCAAACGATCCCTACGAAAAGGCTCAAGTTCGATTCTGGGTTGACTTTATCAACCAAAAGTTCACTGACATCATGATGACAATAATTAAAACTAAGGGAGAAGTACAAGAGAAAGCCCTGAGTCAGGTGCATGAACTAATTAAGGTGCTTGATGAAGGAATCAAGATCTTTTTCCCAGATGGGAATCCAACTTTTGAGGTTAAAAATTTGGGGCTCCTAGACATTATAGCAAGTACAGTGTTTTGCTCATTTTCAGCTACAGAAGAAGTGATTGGTGCAAAGATCTTAGACCCAGAGAAGACTCCATTGCTATACTCCTGGGTGAAAGCTCTGGGAGAGCACCCTCTAGTGATGGAGATAATTATTCCCCATGAAAAGCTGGTGTCAATTCTTGGGCCTTGGAGACAGAGTTTCATCAATCCTCCTCCTTCTCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

233

Amino Acids

26.57

Weight (kDa)

5.74

Isoelectric Point (pI)

29.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	6 - 78	4.6e-19	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	10 - 78	1.1e-16	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 78	2.3e-17	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	160, 263
AcsI	RAATTY	1 cut(s)	466
AfaI	GTAC	4 cut(s)	27, 146, 366, 496
AfiI	CCNNNNNNNGG	1 cut(s)	385
AgsI	TTSAA	5 cut(s)	65, 76, 118, 221, 230
AjnI	CCWGG	1 cut(s)	578
AjuI	GAANNNNNNNTTGG	2 cut(s)	516, 548
AluBI	AGCT	4 cut(s)	136, 518, 590, 640
AluI	AGCT	4 cut(s)	136, 518, 590, 640
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	2 cut(s)	210, 658
AlwI	GGATC	2 cut(s)	160, 263
AoxI	GGCC	1 cut(s)	656
ApeKI	GCWGC	1 cut(s)	136
ApoI	RAATTY	1 cut(s)	466
AspS9I	GGNCC	1 cut(s)	656
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	595
BanII	GRGCYC	1 cut(s)	477
BbsI	GAAGAC	1 cut(s)	566
Bbv12I	GWGCWC	1 cut(s)	603
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	2 cut(s)	434, 607
BciT130I	CCWGG	1 cut(s)	580
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	2 cut(s)	210, 658
BfaI	CTAG	3 cut(s)	68, 479, 608
BfmI	CTRYAG	1 cut(s)	519
BglII	AGATCT	2 cut(s)	426, 543
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
Bme1390I	CCNGG	2 cut(s)	170, 580
BmgT120I	GGNCC	1 cut(s)	656
BmiI	GGNNCC	1 cut(s)	476
BmrFI	CCNGG	2 cut(s)	170, 580
BmrI	ACTGGG	1 cut(s)	146
BmuI	ACTGGG	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	566
BpuEI	CTTGAG	2 cut(s)	125, 270
BpuMI	CCSGG	1 cut(s)	170
BsaBI	GATNNNNATC	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	579, 659
BsaXI	ACNNNNNCTCC	2 cut(s)	655, 685
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse1I	ACTGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	566
Bse8I	GATNNNNATC	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	580
BseDI	CCNNGG	2 cut(s)	579, 659
BseGI	GGATG	2 cut(s)	39, 213
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMI	GCAATG	1 cut(s)	566
BseMII	CTCAG	2 cut(s)	192, 371
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	675
BseXI	GCAGC	1 cut(s)	123
BshFI	GGCC	1 cut(s)	658
BsiHKAI	GWGCWC	1 cut(s)	603
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	2 cut(s)	210, 658
BsnI	GGCC	1 cut(s)	658
Bsp1286I	GDGCHC	2 cut(s)	477, 603
Bsp143I	GATC	4 cut(s)	165, 268, 426, 543
BspANI	GGCC	1 cut(s)	658
BspCNI	CTCAG	2 cut(s)	193, 372
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	476
BspPI	GGATC	2 cut(s)	160, 263
BsrDI	GCAATG	1 cut(s)	566
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	2 cut(s)	579, 659
BssMI	GATC	4 cut(s)	165, 268, 426, 543
BssT1I	CCWWGG	1 cut(s)	659
Bst2UI	CCWGG	1 cut(s)	580
Bst4CI	ACNGT	1 cut(s)	499
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	5 cut(s)	54, 201, 354, 380, 547
BstENI	CCTNNNNNAGG	1 cut(s)	383
BstF5I	GGATG	2 cut(s)	39, 213
BstKTI	GATC	4 cut(s)	168, 271, 429, 546
BstMAI	GTCTC	2 cut(s)	210, 658
BstMBI	GATC	4 cut(s)	165, 268, 426, 543
BstNI	CCWGG	1 cut(s)	580
BstSCI	CCNGG	2 cut(s)	168, 578
BstSFI	CTRYAG	1 cut(s)	519
BstV1I	GCAGC	1 cut(s)	123
BstV2I	GAAGAC	1 cut(s)	566
BstX2I	RGATCY	3 cut(s)	165, 426, 543
BstYI	RGATCY	3 cut(s)	165, 426, 543
BsuRI	GGCC	1 cut(s)	658
BtsCI	GGATG	2 cut(s)	39, 213
BtsIMutI	CAGTG	2 cut(s)	324, 504
Cac8I	GCNNGC	1 cut(s)	43
CciI	TCATGA	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	656
Csp6I	GTAC	4 cut(s)	26, 145, 365, 495
CviAII	CATG	4 cut(s)	29, 334, 392, 632
CviQI	GTAC	4 cut(s)	26, 145, 365, 495
DdeI	CTNAG	5 cut(s)	54, 201, 354, 380, 547
DpnI	GATC	4 cut(s)	167, 270, 428, 545
DpnII	GATC	4 cut(s)	165, 268, 426, 543
Eco130I	CCWWGG	1 cut(s)	659
Eco24I	GRGCYC	1 cut(s)	477
EcoNI	CCTNNNNNAGG	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	578
EcoT14I	CCWWGG	1 cut(s)	659
EcoT38I	GRGCYC	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	659
FaeI	CATG	4 cut(s)	32, 337, 395, 635
FatI	CATG	4 cut(s)	28, 333, 391, 631
Fnu4HI	GCNGC	1 cut(s)	137
FokI	GGATG	2 cut(s)	46, 200
FriOI	GRGCYC	1 cut(s)	477
Fsp4HI	GCNGC	1 cut(s)	137
FspBI	CTAG	3 cut(s)	68, 479, 608
GluI	GCNGC	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	658
HapII	CCGG	1 cut(s)	170
Hin1II	CATG	4 cut(s)	32, 337, 395, 635
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	6 cut(s)	203, 294, 382, 420, 445, 562
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	595
Hpy166II	GTNNAC	4 cut(s)	157, 181, 304, 324
Hpy188III	TCNNGA	3 cut(s)	118, 334, 424
Hpy8I	GTNNAC	4 cut(s)	157, 181, 304, 324
HpyAV	CCTTC	3 cut(s)	82, 410, 699
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4V	TGCA	2 cut(s)	391, 539
HpyF3I	CTNAG	5 cut(s)	54, 201, 354, 380, 547
Hsp92II	CATG	4 cut(s)	32, 337, 395, 635
Kzo9I	GATC	4 cut(s)	165, 268, 426, 543
LmnI	GCTCC	1 cut(s)	480
Lsp1109I	GCAGC	1 cut(s)	123
MaeI	CTAG	3 cut(s)	68, 479, 608
MalI	GATC	4 cut(s)	167, 270, 428, 545
MboI	GATC	4 cut(s)	165, 268, 426, 543
MboII	GAAGA	6 cut(s)	119, 122, 175, 242, 536, 571
MflI	RGATCY	3 cut(s)	165, 426, 543
MhlI	GDGCHC	2 cut(s)	477, 603
MluCI	AATT	5 cut(s)	345, 399, 466, 621, 648
MlyI	GAGTC	3 cut(s)	212, 391, 556
MmeI	TCCRAC	1 cut(s)	473
MnlI	CCTC	6 cut(s)	51, 261, 451, 615, 693, 696
MseI	TTAA	5 cut(s)	81, 348, 402, 462, 700
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	2 cut(s)	170, 580
MvaI	CCWGG	1 cut(s)	580
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	4 cut(s)	165, 268, 426, 543
NlaIII	CATG	4 cut(s)	32, 337, 395, 635
NlaIV	GGNNCC	1 cut(s)	476
PagI	TCATGA	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PfeI	GAWTC	3 cut(s)	294, 420, 445
PkrI	GCNGC	1 cut(s)	138
PleI	GAGTC	3 cut(s)	211, 390, 556
PpsI	GAGTC	3 cut(s)	211, 390, 556
Psp6I	CCWGG	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	578
PspN4I	GGNNCC	1 cut(s)	476
PspPI	GGNCC	1 cut(s)	656
PsuI	RGATCY	3 cut(s)	165, 426, 543
RsaI	GTAC	4 cut(s)	27, 146, 366, 496
RsaNI	GTAC	4 cut(s)	26, 145, 365, 495
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	5 cut(s)	81, 348, 402, 462, 700
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	4 cut(s)	165, 268, 426, 543
Sau96I	GGNCC	1 cut(s)	656
SchI	GAGTC	3 cut(s)	212, 391, 556
ScrFI	CCNGG	2 cut(s)	170, 580
SduI	GDGCHC	2 cut(s)	477, 603
SetI	ASST	8 cut(s)	138, 196, 390, 408, 462, 520, 592, 642
SfcI	CTRYAG	1 cut(s)	519
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	2 cut(s)	140, 285
SmoI	CTYRAG	2 cut(s)	140, 285
Sse9I	AATT	5 cut(s)	345, 399, 466, 621, 648
SspMI	CTAG	3 cut(s)	68, 479, 608
StyD4I	CCNGG	2 cut(s)	168, 578
StyI	CCWWGG	1 cut(s)	659
TaaI	ACNGT	1 cut(s)	499
TaqI	TCGA	1 cut(s)	292
TasI	AATT	5 cut(s)	345, 399, 466, 621, 648
TatI	WGTACW	4 cut(s)	25, 144, 364, 494
TfiI	GAWTC	3 cut(s)	294, 420, 445
Tru1I	TTAA	5 cut(s)	81, 348, 402, 462, 700
Tru9I	TTAA	5 cut(s)	81, 348, 402, 462, 700
TscAI	CASTG	2 cut(s)	331, 504
TseI	GCWGC	1 cut(s)	136
TspDTI	ATGAA	5 cut(s)	111, 408, 429, 648, 664
TspRI	CASTG	2 cut(s)	331, 504
XagI	CCTNNNNNAGG	1 cut(s)	383
XapI	RAATTY	1 cut(s)	466
XspI	CTAG	3 cut(s)	68, 479, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.