Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Forward (+)

3025193 .. 3025669

Gene Structure 477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG041500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGACGACAGTAATTATAACTGAGGGAGAAGTACAAGAGAAAGCCCTCAGTCAGGTGTATGAACTAATGAAGTTACTTGATGAAGGAATCAAGACCTTTTTCCCAGATGGGAATCCAACTTTTGAGGCTAGGAATTTAGGGCTCCTAGACATTGTAGGAAGTTCAGTGTTTTGTGCATTTTCAGCTGTAGAAGAATTGATTGTTGTAAAGATCATAGACCCAGAGAAGACTCCAGTGCTATTCTCTTGGATAACAGCTCTGAGAGAGCAACCTATAGTGATGGAGACAATTGCTCCTCCTGAAAAGCTGGTGTCACTTATTCTTAGGCCTTGGAGACAGGGTTTCATCAATCCTCATCTTTCTCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

123

Amino Acids

13.78

Weight (kDa)

4.71

Isoelectric Point (pI)

35.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	133
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	52
AluBI	AGCT	3 cut(s)	185, 257, 307
AluI	AGCT	3 cut(s)	185, 257, 307
Alw26I	GTCTC	2 cut(s)	278, 328
AoxI	GGCC	1 cut(s)	326
ApoI	RAATTY	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	233
BccI	CCATC	2 cut(s)	101, 274
BcoDI	GTCTC	2 cut(s)	278, 328
BfaI	CTAG	2 cut(s)	129, 146
BfmI	CTRYAG	2 cut(s)	186, 273
BmiI	GGNNCC	1 cut(s)	143
BpiI	GAAGAC	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	216
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	329
BsaXI	ACNNNNNCTCC	4 cut(s)	277, 307, 325, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	233
Bse8I	GATNNNNATC	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	329
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	3 cut(s)	12, 61, 251
BseNI	ACTGG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	2 cut(s)	278, 328
BsnI	GGCC	1 cut(s)	328
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	210
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	3 cut(s)	13, 60, 252
BspLI	GGNNCC	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	329
BssMI	GATC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	329
Bst4CI	ACNGT	1 cut(s)	10
BstDEI	CTNAG	4 cut(s)	21, 47, 260, 323
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstKTI	GATC	1 cut(s)	213
BstMAI	GTCTC	2 cut(s)	278, 328
BstMBI	GATC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstSFI	CTRYAG	2 cut(s)	186, 273
BstV2I	GAAGAC	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	328
BtsIMutI	CAGTG	2 cut(s)	171, 240
Csp6I	GTAC	1 cut(s)	32
CviJI	RGCY	7 cut(s)	44, 128, 142, 185, 257, 307, 328
CviKI_1	RGCY	7 cut(s)	44, 128, 142, 185, 257, 307, 328
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	4 cut(s)	21, 47, 260, 323
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	329
Eco147I	AGGCCT	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	144
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	329
FaiI	YATR	4 cut(s)	17, 60, 215, 275
FriOI	GRGCYC	1 cut(s)	144
FspBI	CTAG	2 cut(s)	129, 146
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	328
HinfI	GANTC	3 cut(s)	87, 112, 229
Hpy188I	TCNGA	1 cut(s)	261
Hpy188III	TCNNGA	2 cut(s)	91, 299
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	4 cut(s)	21, 47, 260, 323
Kzo9I	GATC	1 cut(s)	210
LmnI	GCTCC	2 cut(s)	147, 298
LpnPI	CCDG	7 cut(s)	38, 117, 234, 246, 293, 312, 323
MaeI	CTAG	2 cut(s)	129, 146
MaeIII	GTNAC	2 cut(s)	72, 312
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	2 cut(s)	203, 238
MfeI	CAATTG	1 cut(s)	288
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	4 cut(s)	12, 133, 194, 288
MlyI	GAGTC	1 cut(s)	223
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	5 cut(s)	16, 56, 118, 306, 363
MseI	TTAA	1 cut(s)	370
MspA1I	CMGCKG	1 cut(s)	185
MunI	CAATTG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	182
NdeII	GATC	1 cut(s)	210
NlaIV	GGNNCC	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	312
PceI	AGGCCT	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	87, 112
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PsiI	TTATAA	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	370
Sau3AI	GATC	1 cut(s)	210
SchI	GAGTC	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	6 cut(s)	57, 98, 187, 259, 274, 309
SfcI	CTRYAG	2 cut(s)	186, 273
Sse9I	AATT	4 cut(s)	12, 133, 194, 288
SseBI	AGGCCT	1 cut(s)	328
SspMI	CTAG	2 cut(s)	129, 146
StuI	AGGCCT	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	10
TasI	AATT	4 cut(s)	12, 133, 194, 288
TatI	WGTACW	1 cut(s)	31
TfiI	GAWTC	2 cut(s)	87, 112
Tru1I	TTAA	1 cut(s)	370
Tru9I	TTAA	1 cut(s)	370
TscAI	CASTG	2 cut(s)	171, 240
TseFI	GTSAC	1 cut(s)	312
Tsp45I	GTSAC	1 cut(s)	312
TspDTI	ATGAA	4 cut(s)	75, 83, 96, 334
TspRI	CASTG	2 cut(s)	171, 240
XagI	CCTNNNNNAGG	1 cut(s)	50
XapI	RAATTY	1 cut(s)	133
XspI	CTAG	2 cut(s)	129, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.