Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Forward (+)

64447114 .. 64448178

Gene Structure 1065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCAGAGCAAGACAAGGTGATCCTACACGGAATGTGGGCTAGTCCCTTAACAAAGAGGGTGGAATTTGCCCTCAAAGTGAAGGGTATACCCTATGAATATGTGGAAGAAGATTTGAGCAACAAAAGTCCATTGCTCCTCAAGTTCAACCCTGTTCATAAGAAGGTTCCTGTGCTTGTCCACAATGGGAAAGCCATTGCTGAGTCTCTTGTGATCATTGAATATATTGATGAAACCTGGAAAACTGGCCCTCAACTTTTACCAGAAGATCCATACAAACGATCCCAAATTCGTTTCTGGGCTAGCTATATGCAGCAGGTGTTTGAGGCCATGTTCTTAGTGGTCAAAACCATTGGAGAAGCACAAGAGAAAGCCATCAAAGAAGTGTCTGAGAAGGTAAAATTACTTGAAACCGGACTCAAGGGTTTGTTCCCGAATGGCATTCCTTCAGTAGATGAGTACAGCAAAAATGTGACACTGCTAGATTTGGTCATTTTCGCACACTTGGGGGGATATGAAGCTCAGGAAGAAGTCCTTGGCCTAAAGTTTGTCGACTCCGAGAGGACTCCGCTGGTAGTTTCCTGCATAACAGCTCTGATTGAGATCCCTGCGTTGAAAGAGTCGCGGATTCCTCATGAAAAGATGGTGGCCTTCCTCAAGTTCCTTAGGGAAAATGCCCTCAAGTCTGCTACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

232

Amino Acids

26.19

Weight (kDa)

6.25

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	7 - 78	1.9e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 79	2.6e-17	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 79	1.4e-15	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	307
Acc36I	ACCTGC	1 cut(s)	307
AccI	GTMKAC	2 cut(s)	88, 552
AccII	CGCG	1 cut(s)	625
AciI	CCGC	2 cut(s)	569, 625
AclWI	GGATC	4 cut(s)	16, 263, 276, 598
AcsI	RAATTY	2 cut(s)	65, 288
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	1 cut(s)	461
AgsI	TTSAA	4 cut(s)	148, 221, 410, 616
AjnI	CCWGG	1 cut(s)	236
AjuI	GAANNNNNNNTTGG	2 cut(s)	519, 551
AluBI	AGCT	4 cut(s)	306, 521, 593, 695
AluI	AGCT	4 cut(s)	306, 521, 593, 695
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	4 cut(s)	16, 263, 276, 598
AoxI	GGCC	4 cut(s)	247, 327, 538, 648
ApeKI	GCWGC	1 cut(s)	313
ApoI	RAATTY	2 cut(s)	65, 288
AspS9I	GGNCC	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	31
AsuNHI	GCTAGC	1 cut(s)	302
AxyI	CCTNAGG	1 cut(s)	665
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	2 cut(s)	383, 637
BciT130I	CCWGG	1 cut(s)	238
BclI	TGATCA	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	3 cut(s)	42, 303, 482
BfmI	CTRYAG	1 cut(s)	690
BfuAI	ACCTGC	1 cut(s)	307
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
Bme1390I	CCNGG	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	238
BmtI	GCTAGC	1 cut(s)	306
Bpu10I	CCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	4 cut(s)	125, 404, 641, 665
BsaBI	GATNNNNATC	1 cut(s)	602
BsaJI	CCNNGG	1 cut(s)	535
BsaWI	WCCGGW	1 cut(s)	413
Bse1I	ACTGG	1 cut(s)	250
Bse21I	CCTNAGG	1 cut(s)	665
Bse3DI	GCAATG	2 cut(s)	131, 195
Bse8I	GATNNNNATC	1 cut(s)	602
BseBI	CCWGG	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	535
BseJI	GATNNNNATC	1 cut(s)	602
BseMI	GCAATG	2 cut(s)	131, 195
BseMII	CTCAG	3 cut(s)	192, 381, 536
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	325
Bsh1236I	CGCG	1 cut(s)	625
BshFI	GGCC	4 cut(s)	249, 329, 540, 650
BsiSI	CCGG	1 cut(s)	414
BslFI	GGGAC	1 cut(s)	30
BsmAI	GTCTC	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	441
BsnI	GGCC	4 cut(s)	249, 329, 540, 650
Bsp143I	GATC	5 cut(s)	21, 213, 268, 281, 603
BspACI	CCGC	2 cut(s)	569, 625
BspANI	GGCC	4 cut(s)	249, 329, 540, 650
BspCNI	CTCAG	3 cut(s)	193, 382, 535
BspFNI	CGCG	1 cut(s)	625
BspHI	TCATGA	1 cut(s)	634
BspLI	GGNNCC	1 cut(s)	168
BspMI	ACCTGC	1 cut(s)	307
BspOI	GCTAGC	1 cut(s)	306
BspPI	GGATC	4 cut(s)	16, 263, 276, 598
BsrDI	GCAATG	2 cut(s)	131, 195
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	1 cut(s)	535
BssMI	GATC	5 cut(s)	21, 213, 268, 281, 603
BssNAI	GTATAC	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	535
Bst1107I	GTATAC	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	5 cut(s)	201, 337, 390, 522, 665
BstFNI	CGCG	1 cut(s)	625
BstKTI	GATC	5 cut(s)	24, 216, 271, 284, 606
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	5 cut(s)	21, 213, 268, 281, 603
BstNI	CCWGG	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	236
BstSFI	CTRYAG	1 cut(s)	690
BstUI	CGCG	1 cut(s)	625
BstV1I	GCAGC	1 cut(s)	325
BstX2I	RGATCY	2 cut(s)	268, 603
BstYI	RGATCY	2 cut(s)	268, 603
BstZ17I	GTATAC	1 cut(s)	89
Bsu36I	CCTNAGG	1 cut(s)	665
BsuRI	GGCC	4 cut(s)	249, 329, 540, 650
BtsI	GCAGTG	1 cut(s)	476
BtsIMutI	CAGTG	1 cut(s)	476
BveI	ACCTGC	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	304
CciI	TCATGA	1 cut(s)	634
Cfr13I	GGNCC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	460
CspCI	CAANNNNNGTGG	2 cut(s)	42, 77
CviAII	CATG	2 cut(s)	331, 635
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	5 cut(s)	201, 337, 390, 522, 665
DpnI	GATC	5 cut(s)	23, 215, 270, 283, 605
DpnII	GATC	5 cut(s)	21, 213, 268, 281, 603
Eco130I	CCWWGG	1 cut(s)	535
Eco57I	CTGAAG	1 cut(s)	432
Eco81I	CCTNAGG	1 cut(s)	665
EcoRII	CCWGG	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	535
ErhI	CCWWGG	1 cut(s)	535
FaeI	CATG	2 cut(s)	334, 638
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	2 cut(s)	330, 634
FbaI	TGATCA	1 cut(s)	213
FblI	GTMKAC	2 cut(s)	88, 552
Fnu4HI	GCNGC	1 cut(s)	314
Fsp4HI	GCNGC	1 cut(s)	314
FspBI	CTAG	3 cut(s)	42, 303, 482
GluI	GCNGC	1 cut(s)	314
HaeIII	GGCC	4 cut(s)	249, 329, 540, 650
HapII	CCGG	1 cut(s)	414
Hin1II	CATG	2 cut(s)	334, 638
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HinfI	GANTC	6 cut(s)	203, 417, 554, 565, 620, 628
HpaII	CCGG	1 cut(s)	414
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	3 cut(s)	89, 181, 553
Hpy188I	TCNGA	3 cut(s)	391, 559, 597
Hpy188III	TCNNGA	3 cut(s)	433, 524, 635
Hpy8I	GTNNAC	3 cut(s)	89, 181, 553
HpyAV	CCTTC	5 cut(s)	76, 157, 388, 456, 661
HpyCH4V	TGCA	2 cut(s)	313, 585
HpyF3I	CTNAG	5 cut(s)	201, 337, 390, 522, 665
Hsp92II	CATG	2 cut(s)	334, 638
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	5 cut(s)	21, 213, 268, 281, 603
LmnI	GCTCC	1 cut(s)	141
Lsp1109I	GCAGC	1 cut(s)	325
MaeI	CTAG	3 cut(s)	42, 303, 482
MaeIII	GTNAC	1 cut(s)	472
MalI	GATC	5 cut(s)	23, 215, 270, 283, 605
MboI	GATC	5 cut(s)	21, 213, 268, 281, 603
MboII	GAAGA	4 cut(s)	119, 122, 278, 539
MflI	RGATCY	2 cut(s)	268, 603
MluCI	AATT	3 cut(s)	65, 288, 401
MlyI	GAGTC	5 cut(s)	212, 411, 548, 559, 629
MnlI	CCTC	9 cut(s)	51, 83, 149, 261, 319, 555, 642, 665, 689
MseI	TTAA	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	571
MspI	CCGG	1 cut(s)	414
MspR9I	CCNGG	1 cut(s)	238
Mva1269I	GAATGC	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	238
MvnI	CGCG	1 cut(s)	625
NdeII	GATC	5 cut(s)	21, 213, 268, 281, 603
NheI	GCTAGC	1 cut(s)	302
NlaIII	CATG	2 cut(s)	334, 638
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	472
PagI	TCATGA	1 cut(s)	634
PaqCI	CACCTGC	1 cut(s)	307
PctI	GAATGC	1 cut(s)	441
PfeI	GAWTC	1 cut(s)	628
PkrI	GCNGC	1 cut(s)	315
PleI	GAGTC	5 cut(s)	211, 411, 548, 559, 628
PpsI	GAGTC	5 cut(s)	211, 411, 548, 559, 628
Psp6I	CCWGG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	248
PsuI	RGATCY	2 cut(s)	268, 603
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
SalI	GTCGAC	1 cut(s)	551
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	5 cut(s)	21, 213, 268, 281, 603
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	5 cut(s)	212, 411, 548, 559, 629
ScrFI	CCNGG	1 cut(s)	238
SetI	ASST	9 cut(s)	21, 168, 239, 308, 321, 399, 523, 595, 697
SfcI	CTRYAG	1 cut(s)	690
SmlI	CTYRAG	4 cut(s)	140, 419, 656, 680
SmoI	CTYRAG	4 cut(s)	140, 419, 656, 680
Sse9I	AATT	3 cut(s)	65, 288, 401
SsiI	CCGC	2 cut(s)	569, 625
SspMI	CTAG	3 cut(s)	42, 303, 482
StyD4I	CCNGG	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	535
TaqI	TCGA	1 cut(s)	552
TasI	AATT	3 cut(s)	65, 288, 401
TatI	WGTACW	1 cut(s)	459
TfiI	GAWTC	1 cut(s)	628
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	1 cut(s)	483
TseFI	GTSAC	1 cut(s)	472
TseI	GCWGC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	472
TspDTI	ATGAA	5 cut(s)	111, 146, 246, 531, 651
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	1 cut(s)	483
XapI	RAATTY	2 cut(s)	65, 288
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XmiI	GTMKAC	2 cut(s)	88, 552
XspI	CTAG	3 cut(s)	42, 303, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.