Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000433

Physical Location & Seq

Genomic Coordinates Reverse (-)

32770335 .. 32771188

Gene Structure 854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1192000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTGGGCAAGCCCTTATGTAAAGAGGGTGGAATTGGCCCTCAAACTTAATGGCATACCCTATGAATATGTGGAAAAAGACTTGAAGAACAAAAGCCCATCACTCCTCAAGTTGAATCTTGTTCATCAGAAAGTTCCAGTGCTTGTCCACAATGGAAAACCGATTGTTGAGTCTCTTGTCATCCTTGAATACATCGATGAAACCTGGAAAACTGGACTTCTTCCACAAGATCCCTATAAAAGATCCCAAGTTCACTTATGGGCCGGCTTTATGCAACATGTGTTTGAGAGCATGGTCTCAGTGTTGAAAACCAGTGGGCAAGCACAAGAGAAAGCCATCAAAGAAGTGAGTGAGAAACAAAATCTGCTTGAAGAGGGACTGAAGGGTTTCTACCCTAATGGATTTCCCAAGTCGTTTGACCCTAAGAATGTTGGACTCCTAGAAGTGGTCATTCTTGCACACTTACGGGTATATGAGGCTCGGGAAGAAGTCATTGGATTTAAGGTCATAGACCTTCAAATAACTCCACTCATATATTCATGCATAAGAGCAATGACTGAGATACCTGAGGTGAAAGAGGTGAGCAATCCTCATGAGAAAGTGGTGGCTTTCCTCAAGTTTTTCAGAAATAAAGCTATTAAATCTTCTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N GST_N_3

Protein Analysis

218

Amino Acids

24.81

Weight (kDa)

8.75

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	2 - 67	6.6e-17	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	3 - 68	4.1e-17	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	3 - 68	3.8e-15	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62480 AT5G62480 AT5G62480
fragaria_vesca	FvH4_5g15010 FvH4_5g15020 FvH4_5g15100 FvH4_5g15110 FvH4_5g15120 FvH4_5g15121 FvH4_5g15121 FvH4_5g15121
malus_domestica	MD06G1192000.v1.1 MD06G1192100.v1.1
prunus_persica	Prupe.5G191500_v2.0.a1 Prupe.5G191600_v2.0.a1 Prupe.5G191800_v2.0.a1 Prupe.5G192500_v2.0.a1 Prupe.5G192600_v2.0.a1 Prupe.5G192800_v2.0.a1
pyrus_communis	pycom06g17020
rosa_chinensis	RchiOBHm_Chr7g0181061 RchiOBHm_Chr7g0181081 RchiOBHm_Chr7g0181091 RchiOBHm_Chr7g0181101 RchiOBHm_Chr7g0181111 RchiOBHm_Chr7g0181241 RchiOBHm_Chr7g0181251 RchiOBHm_Chr7g0181261
rosa_laevigata	RLG00000005202 RLG00000005203 RLG00000005204 RLG00000005213 RLG00000005214 RLG00000005215 RLG00000005216
rosa_multiflora	Rmu_co8113330.1_g000001 Rmu_co8221866.1_g000001 Rmu_sc0001147.1_g000011 Rmu_sc0001147.1_g000012 Rmu_sc0001147.1_g000013 Rmu_sc0001147.1_g000024 Rmu_sc0001147.1_g000025 Rmu_sc0007079.1_g000005 Rmu_sc0007079.1_g000009 Rmu_sc0007079.1_g000010 Rmu_sc0007079.1_g000011 Rmu_sc0007079.1_g000012 Rmu_sc0015707.1_g000001 Rmu_sc0041900.1_g000001
rosa_roxburghii	Rroxscaffold_3G00272160 Rroxscaffold_3G00272170 Rroxscaffold_3G00272180 Rroxscaffold_3G00272270 Rroxscaffold_3G00272280 Rroxscaffold_3G00272290 Rroxscaffold_3G00272300
rosa_rugosa	Rorug06G0438700 Rorug06G0438700 Rorug06G0438700 Rorug06G0439800 Rorug06G0439900 Rorug06G0440000
rosa_samantha	Rh7AG040100 Rh7AG040200 Rh7AG040300 Rh7AG040400 Rh7AG041500 Rh7AG041600 Rh7AG041700 Rh7BG039500 Rh7BG039600 Rh7BG039800 Rh7BG040800 Rh7CG041300 Rh7CG041400 Rh7CG041600 Rh7CG041700 Rh7CG041800 Rh7CG043000 Rh7CG043100 Rh7CG043200 Rh7DG039700 Rh7DG039900 Rh7DG040000 Rh7DG040100 Rh7DG040200 Rh7DG041300 Rh7DG041400 Rh7DG041500
rosa_wichuraiana	Rw7G003310 Rw7G003320 Rw7G003330 Rw7G003420 Rw7G003430 Rw7G003440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	224, 237
AcuI	CTGAAG	1 cut(s)	401
AfiI	CCNNNNNNNGG	1 cut(s)	445
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	6 cut(s)	85, 115, 188, 307, 371, 518
AjnI	CCWGG	1 cut(s)	203
AjuI	GAANNNNNNNTTGG	2 cut(s)	477, 509
AluBI	AGCT	1 cut(s)	635
AluI	AGCT	1 cut(s)	635
Alw26I	GTCTC	2 cut(s)	177, 301
AlwI	GGATC	2 cut(s)	224, 237
Ama87I	CYCGRG	1 cut(s)	480
AoxI	GGCC	2 cut(s)	36, 261
Asp700I	GAANNNNTTC	1 cut(s)	386
AspS9I	GGNCC	2 cut(s)	37, 261
AsuHPI	GGTGA	2 cut(s)	583, 592
AvaI	CYCGRG	1 cut(s)	480
AxyI	CCTNAGG	1 cut(s)	567
BarI	GAAGNNNNNNTAC	2 cut(s)	374, 406
BccI	CCATC	2 cut(s)	106, 344
BciT130I	CCWGG	1 cut(s)	205
BcoDI	GTCTC	2 cut(s)	177, 301
BfaI	CTAG	1 cut(s)	440
Bme1390I	CCNGG	1 cut(s)	205
BmeT110I	CYCGRG	1 cut(s)	480
BmgT120I	GGNCC	2 cut(s)	37, 261
BmrFI	CCNGG	1 cut(s)	205
BplI	GAGNNNNNCTC	2 cut(s)	574, 606
BpuEI	CTTGAG	2 cut(s)	92, 599
Bsa29I	ATCGAT	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	3 cut(s)	137, 217, 312
Bse21I	CCTNAGG	1 cut(s)	567
Bse3DI	GCAATG	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	205
BseCI	ATCGAT	1 cut(s)	195
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	3 cut(s)	312, 549, 558
BseNI	ACTGG	3 cut(s)	137, 217, 312
BseRI	GAGGAG	1 cut(s)	95
BshFI	GGCC	2 cut(s)	38, 263
BshVI	ATCGAT	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	480
BsiSI	CCGG	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmAI	GTCTC	2 cut(s)	177, 301
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	2 cut(s)	38, 263
Bso31I	GGTCTC	1 cut(s)	301
BsoBI	CYCGRG	1 cut(s)	480
Bsp143I	GATC	2 cut(s)	229, 242
BspANI	GGCC	2 cut(s)	38, 263
BspCNI	CTCAG	3 cut(s)	311, 550, 559
BspDI	ATCGAT	1 cut(s)	195
BspHI	TCATGA	1 cut(s)	592
BspPI	GGATC	2 cut(s)	224, 237
BspTNI	GGTCTC	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	558
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	3 cut(s)	137, 217, 312
BssAI	RCCGGY	1 cut(s)	263
BssMI	GATC	2 cut(s)	229, 242
Bst2UI	CCWGG	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	366
BstC8I	GCNNGC	3 cut(s)	10, 265, 321
BstDEI	CTNAG	4 cut(s)	298, 423, 558, 567
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	2 cut(s)	232, 245
BstMAI	GTCTC	2 cut(s)	177, 301
BstMBI	GATC	2 cut(s)	229, 242
BstNI	CCWGG	1 cut(s)	205
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	203
BstX2I	RGATCY	2 cut(s)	229, 242
BstYI	RGATCY	2 cut(s)	229, 242
Bsu15I	ATCGAT	1 cut(s)	195
Bsu36I	CCTNAGG	1 cut(s)	567
BsuRI	GGCC	2 cut(s)	38, 263
BsuTUI	ATCGAT	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	3 cut(s)	144, 306, 319
Cac8I	GCNNGC	3 cut(s)	10, 265, 321
CciI	TCATGA	1 cut(s)	592
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	2 cut(s)	37, 261
ClaI	ATCGAT	1 cut(s)	195
CviAII	CATG	4 cut(s)	278, 292, 540, 593
CviJI	RGCY	9 cut(s)	12, 38, 96, 263, 267, 335, 479, 608, 635
CviKI_1	RGCY	9 cut(s)	12, 38, 96, 263, 267, 335, 479, 608, 635
DdeI	CTNAG	4 cut(s)	298, 423, 558, 567
DpnI	GATC	2 cut(s)	231, 244
DpnII	GATC	2 cut(s)	229, 242
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco31I	GGTCTC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	401
Eco81I	CCTNAGG	1 cut(s)	567
Eco88I	CYCGRG	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	203
EcoT22I	ATGCAT	1 cut(s)	545
FaeI	CATG	4 cut(s)	281, 295, 543, 596
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	4 cut(s)	277, 291, 539, 592
FokI	GGATG	1 cut(s)	167
FspBI	CTAG	1 cut(s)	440
HaeIII	GGCC	2 cut(s)	38, 263
HapII	CCGG	1 cut(s)	264
Hin1II	CATG	4 cut(s)	281, 295, 543, 596
HinfI	GANTC	3 cut(s)	115, 170, 435
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	2 cut(s)	583, 592
Hpy166II	GTNNAC	2 cut(s)	148, 253
Hpy188I	TCNGA	3 cut(s)	129, 626, 649
Hpy188III	TCNNGA	2 cut(s)	482, 593
Hpy8I	GTNNAC	2 cut(s)	148, 253
HpyAV	CCTTC	2 cut(s)	376, 524
HpyCH4V	TGCA	3 cut(s)	274, 458, 543
HpyF3I	CTNAG	4 cut(s)	298, 423, 558, 567
Hsp92II	CATG	4 cut(s)	281, 295, 543, 596
KroI	GCCGGC	1 cut(s)	263
KroNI	GCCGGC	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	229, 242
LpnPI	CCDG	7 cut(s)	150, 190, 198, 217, 277, 325, 579
MaeI	CTAG	1 cut(s)	440
MalI	GATC	2 cut(s)	231, 244
MboI	GATC	2 cut(s)	229, 242
MboII	GAAGA	5 cut(s)	97, 212, 383, 497, 636
MflI	RGATCY	2 cut(s)	229, 242
MluCI	AATT	1 cut(s)	32
MlyI	GAGTC	2 cut(s)	179, 429
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	9 cut(s)	18, 50, 116, 367, 469, 562, 571, 600, 623
Mph1103I	ATGCAT	1 cut(s)	545
MroNI	GCCGGC	1 cut(s)	263
MroXI	GAANNNNTTC	1 cut(s)	386
MseI	TTAA	3 cut(s)	48, 501, 639
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	205
NaeI	GCCGGC	1 cut(s)	265
NdeII	GATC	2 cut(s)	229, 242
NgoMIV	GCCGGC	1 cut(s)	263
NlaIII	CATG	4 cut(s)	281, 295, 543, 596
NsiI	ATGCAT	1 cut(s)	545
NspI	RCATGY	1 cut(s)	281
PagI	TCATGA	1 cut(s)	592
PciI	ACATGT	1 cut(s)	277
PdiI	GCCGGC	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	115
PleI	GAGTC	2 cut(s)	178, 429
PpsI	GAGTC	2 cut(s)	178, 429
PscI	ACATGT	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	203
PspPI	GGNCC	2 cut(s)	37, 261
PsuI	RGATCY	2 cut(s)	229, 242
SaqAI	TTAA	3 cut(s)	48, 501, 639
Sau3AI	GATC	2 cut(s)	229, 242
Sau96I	GGNCC	2 cut(s)	37, 261
SchI	GAGTC	2 cut(s)	179, 429
ScrFI	CCNGG	1 cut(s)	205
SetI	ASST	7 cut(s)	206, 507, 516, 568, 573, 582, 637
SmlI	CTYRAG	2 cut(s)	107, 614
SmoI	CTYRAG	2 cut(s)	107, 614
Sse9I	AATT	1 cut(s)	32
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	1 cut(s)	203
TaqI	TCGA	1 cut(s)	195
TasI	AATT	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	3 cut(s)	48, 501, 639
Tru9I	TTAA	3 cut(s)	48, 501, 639
TscAI	CASTG	3 cut(s)	144, 306, 319
TspDTI	ATGAA	4 cut(s)	78, 113, 213, 528
TspRI	CASTG	3 cut(s)	144, 306, 319
XceI	RCATGY	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	386
XspI	CTAG	1 cut(s)	440
Zsp2I	ATGCAT	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.